NO07G02250.1, NO07G02250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02250.1
Unique NameNO07G02250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1383
Alignment locationchr7:671279..672823 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:671279..672823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02250.1 vs.
Match: EWM27170.1 (hypothetical protein Naga_100010g82 [Nannochloropsis gaditana])

HSP 1 Score: 66.2 bits (160), Expect = 3.000e-7
Identity = 45/112 (40.18%), Postives = 56/112 (50.00%), Query Frame = 0 
Query:  154 RLIHREELVTCATINYGHDLEPESITRGLDRARFVTGLETIDLATVTVDLEDHRTPRGQPLLESLRRMMECLDRLAEQPSSSPSSPSSSSSFSSSSLPPLQHYAIELRLPFY 266
            RL+ REELVTCATIN GHDL+  SI R L+R R                  D  TPRG+ LLE+L+ +ME  D +      SP  P           PP+Q Y  +  +PFY
Sbjct:    5 RLVQREELVTCATINRGHDLDIGSIARSLERPR----------------ASDSHTPRGRALLETLKSVMEYFDHI-----GSPPKPE-----CYVYPPPIQCYGKDTCVPFY 90
The following BLAST results are available for this feature:
BLAST of NO07G02250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27170.13.000e-740.18hypothetical protein Naga_100010g82 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02250NO07G02250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02250.1NO07G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02250.1.cds1NO07G02250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02250.1.cds2NO07G02250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02250.1 ID=NO07G02250.1|Name=NO07G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1383bp
ATGTGGGCTGGTCGTGGTCTTCAAGGCACCTTGAGACGGAAGTTGCTCTC
GCCCTCGTCCTCGCCCCCAGTCCTCTTCCTCCTCCCCCTCCTGCGATGCA
GCCACACCATTCCGGGTCGGGCCACACGGAGGGGCTGTCATGGTTTTTAT
GACCGTTTGCAAAAAGATCAGGAGGAGGAGGATCAGATGAAAGGCCAATC
AAAAGGTGGGGGTGAGTCCAACCCCTCCAGTCGAATGCTCACTGCAGTCC
TTCCCAAAGCGGGCTGGGAAGTGGGGGCCTTGTCGTTCGGACTTCCTAGA
AGACCCCATGGCTTGGGAGATGCCCTCGAGACAACACTTATGGCTGCTGT
GGTTATAGCAAAGCAGAATCTCATCCAAGTGTATGACGCGAGCAGTCATT
CGAGCGAAGAGATTGGCTTGACATCCTGTCGTGCCCTCCACACACTGATT
CAGACCCGCAGGCTCATACACCGCGAAGAATTGGTGACCTGTGCGACCAT
TAACTATGGTCATGACCTTGAGCCGGAGTCCATTACAAGAGGATTAGACA
GAGCGCGCTTTGTGACAGGGTTGGAAACTATAGATCTGGCCACGGTTACT
GTAGATCTAGAGGACCACCGCACACCACGGGGCCAACCGTTACTAGAAAG
CTTGCGGCGCATGATGGAATGCTTGGACAGATTGGCGGAGCAACCTTCAT
CTTCTCCCTCCTCCCCCTCCTCTTCTTCTTCTTTCTCCTCCTCCTCGCTT
CCTCCTCTTCAACATTATGCGATTGAGCTTCGCCTACCGTTCTACATGCA
GCATAAAAACCACCAAGAATTGACCGAAGAGGAGGCTCCTGGATATAAAA
ATGCTGGCATGGCCTTGACAACAGCCCAGCAAGAAGAGCTACTACTACCG
AGAATCGTGGAGGAGGCGGCTCTGGTAGGAAGAAGCAAATTGGCTATGGT
CACGTACCCCATACAACTGACAGGAAAGCATTTGGTGACTTTACCTCTCA
TGCAACCTGAAAGCAAGGCAGGGCGACAAGGTCAAATGCGTCCAGTGTCC
CGCCTGGCCCGTGGCGCGCTGGTGGGATGTACTGATGCTGGCGAATCGCT
TTCTTTGTCGTCCGAGTTACTCCCGCCTGACACAGTGACTCGGCTCAACG
CCGCGCTGAATGGAATGTCCCCGGCCCTCCGCAGTAGCCCACTTCTCGAG
GCAAAAGTAATACGAAGCGTGCTAGCTGCCGAGATAGATATTGTGCAGCT
CGATGTCGACGACATGCTTGGTCTTTTGCCCAGATTTACTGAAACTGGAG
GATTGTTAGTGCGGCGCAAGGATCGCCTACAATTTCAGCAATGTAGGCGA
GTTTTCGATGAGTTTTATCTCCCTGCTTTATAA
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protein sequence of NO07G02250.1

>NO07G02250.1-protein ID=NO07G02250.1-protein|Name=NO07G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MWAGRGLQGTLRRKLLSPSSSPPVLFLLPLLRCSHTIPGRATRRGCHGFY
DRLQKDQEEEDQMKGQSKGGGESNPSSRMLTAVLPKAGWEVGALSFGLPR
RPHGLGDALETTLMAAVVIAKQNLIQVYDASSHSSEEIGLTSCRALHTLI
QTRRLIHREELVTCATINYGHDLEPESITRGLDRARFVTGLETIDLATVT
VDLEDHRTPRGQPLLESLRRMMECLDRLAEQPSSSPSSPSSSSSFSSSSL
PPLQHYAIELRLPFYMQHKNHQELTEEEAPGYKNAGMALTTAQQEELLLP
RIVEEAALVGRSKLAMVTYPIQLTGKHLVTLPLMQPESKAGRQGQMRPVS
RLARGALVGCTDAGESLSLSSELLPPDTVTRLNAALNGMSPALRSSPLLE
AKVIRSVLAAEIDIVQLDVDDMLGLLPRFTETGGLLVRRKDRLQFQQCRR
VFDEFYLPAL*
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mRNA from alignment at chr7:671279..672823-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02250.1 ID=NO07G02250.1|Name=NO07G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1545bp|location=Sequence derived from alignment at chr7:671279..672823- (Nannochloropsis oceanica)
ATGTGGGCTGGTCGTGGTCTTCAAGGCACCTTGAGACGGAAGTTGCTCTC
GCCCTCGTCCTCGCCCCCAGTCCTCTTCCTCCTCCCCCTCCTGCGATGCA
GCCACACCATTCCGGGTCGGGCCACACGGAGGGGCTGTCATGGTTTTTAT
GACCGTTTGCAAAAAGATCAGGAGGAGGAGGATCAGATGAAAGGCCAATC
AAAAGGTGGGGGTGAGTCCAACCCCTCCAGTCGAATGCTCACTGCAGTCC
TTCCCAAAGCGGGCTGGGAAGTGGGGGCCTTGTCGTTCGGACTTCCTAGA
AGACCCCATGGCTTGGGAGATGCCCTCGAGACAACACTTATGGCTGCTGT
GGTTATAGCAAAGCAGAATCTCATCCAAGTGTATGACGCGAGCAGTCATT
CGAGCGAAGAGATTGGCTTGACATCCTGTCGTGCCCTCCACACACTGATT
CAGACCCGCAGGTACGCAATACGGGCGCAAAAGGCAGATTTCTAAGTCTG
CATGAGTCTCTTTGACTTTTCAAGTGACCTATTCTGCCTTTTCTCGCCAT
CAATCCTCGATACCTCTTCTAAACATCTCTTTTATATGGATCCATCTATT
TTCGTGCTTATGAATTCACTCAGGCTCATACACCGCGAAGAATTGGTGAC
CTGTGCGACCATTAACTATGGTCATGACCTTGAGCCGGAGTCCATTACAA
GAGGATTAGACAGAGCGCGCTTTGTGACAGGGTTGGAAACTATAGATCTG
GCCACGGTTACTGTAGATCTAGAGGACCACCGCACACCACGGGGCCAACC
GTTACTAGAAAGCTTGCGGCGCATGATGGAATGCTTGGACAGATTGGCGG
AGCAACCTTCATCTTCTCCCTCCTCCCCCTCCTCTTCTTCTTCTTTCTCC
TCCTCCTCGCTTCCTCCTCTTCAACATTATGCGATTGAGCTTCGCCTACC
GTTCTACATGCAGCATAAAAACCACCAAGAATTGACCGAAGAGGAGGCTC
CTGGATATAAAAATGCTGGCATGGCCTTGACAACAGCCCAGCAAGAAGAG
CTACTACTACCGAGAATCGTGGAGGAGGCGGCTCTGGTAGGAAGAAGCAA
ATTGGCTATGGTCACGTACCCCATACAACTGACAGGAAAGCATTTGGTGA
CTTTACCTCTCATGCAACCTGAAAGCAAGGCAGGGCGACAAGGTCAAATG
CGTCCAGTGTCCCGCCTGGCCCGTGGCGCGCTGGTGGGATGTACTGATGC
TGGCGAATCGCTTTCTTTGTCGTCCGAGTTACTCCCGCCTGACACAGTGA
CTCGGCTCAACGCCGCGCTGAATGGAATGTCCCCGGCCCTCCGCAGTAGC
CCACTTCTCGAGGCAAAAGTAATACGAAGCGTGCTAGCTGCCGAGATAGA
TATTGTGCAGCTCGATGTCGACGACATGCTTGGTCTTTTGCCCAGATTTA
CTGAAACTGGAGGATTGTTAGTGCGGCGCAAGGATCGCCTACAATTTCAG
CAATGTAGGCGAGTTTTCGATGAGTTTTATCTCCCTGCTTTATAA
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Coding sequence (CDS) from alignment at chr7:671279..672823-

>NO07G02250.1 ID=NO07G02250.1|Name=NO07G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at chr7:671279..672823- (Nannochloropsis oceanica)
ATGTGGGCTGGTCGTGGTCTTCAAGGCACCTTGAGACGGAAGTTGCTCTC
GCCCTCGTCCTCGCCCCCAGTCCTCTTCCTCCTCCCCCTCCTGCGATGCA
GCCACACCATTCCGGGTCGGGCCACACGGAGGGGCTGTCATGGTTTTTAT
GACCGTTTGCAAAAAGATCAGGAGGAGGAGGATCAGATGAAAGGCCAATC
AAAAGGTGGGGGTGAGTCCAACCCCTCCAGTCGAATGCTCACTGCAGTCC
TTCCCAAAGCGGGCTGGGAAGTGGGGGCCTTGTCGTTCGGACTTCCTAGA
AGACCCCATGGCTTGGGAGATGCCCTCGAGACAACACTTATGGCTGCTGT
GGTTATAGCAAAGCAGAATCTCATCCAAGTGTATGACGCGAGCAGTCATT
CGAGCGAAGAGATTGGCTTGACATCCTGTCGTGCCCTCCACACACTGATT
CAGACCCGCAGGCTCATACACCGCGAAGAATTGGTGACCTGTGCGACCAT
TAACTATGGTCATGACCTTGAGCCGGAGTCCATTACAAGAGGATTAGACA
GAGCGCGCTTTGTGACAGGGTTGGAAACTATAGATCTGGCCACGGTTACT
GTAGATCTAGAGGACCACCGCACACCACGGGGCCAACCGTTACTAGAAAG
CTTGCGGCGCATGATGGAATGCTTGGACAGATTGGCGGAGCAACCTTCAT
CTTCTCCCTCCTCCCCCTCCTCTTCTTCTTCTTTCTCCTCCTCCTCGCTT
CCTCCTCTTCAACATTATGCGATTGAGCTTCGCCTACCGTTCTACATGCA
GCATAAAAACCACCAAGAATTGACCGAAGAGGAGGCTCCTGGATATAAAA
ATGCTGGCATGGCCTTGACAACAGCCCAGCAAGAAGAGCTACTACTACCG
AGAATCGTGGAGGAGGCGGCTCTGGTAGGAAGAAGCAAATTGGCTATGGT
CACGTACCCCATACAACTGACAGGAAAGCATTTGGTGACTTTACCTCTCA
TGCAACCTGAAAGCAAGGCAGGGCGACAAGGTCAAATGCGTCCAGTGTCC
CGCCTGGCCCGTGGCGCGCTGGTGGGATGTACTGATGCTGGCGAATCGCT
TTCTTTGTCGTCCGAGTTACTCCCGCCTGACACAGTGACTCGGCTCAACG
CCGCGCTGAATGGAATGTCCCCGGCCCTCCGCAGTAGCCCACTTCTCGAG
GCAAAAGTAATACGAAGCGTGCTAGCTGCCGAGATAGATATTGTGCAGCT
CGATGTCGACGACATGCTTGGTCTTTTGCCCAGATTTACTGAAACTGGAG
GATTGTTAGTGCGGCGCAAGGATCGCCTACAATTTCAGCAATGTAGGCGA
GTTTTCGATGAGTTTTATCTCCCTGCTTTATAA
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Synonyms
Publications