NO07G02080.1, NO07G02080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02080.1
Unique NameNO07G02080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1254
Alignment locationchr7:615609..616966 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:615609..616966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02080.1 vs.
Match: EWM27154.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 651.4 bits (1679), Expect = 1.900e-183
Identity = 340/454 (74.89%), Postives = 368/454 (81.06%), Query Frame = 0 
Query:    1 MNDRRRIRTTEEQEQQPSDVEVAGAVDRRSRGAGMSMRRQLTALALCCSACAVQAFVV-------------------------------------SSRPRGGSSGGSGSDSQLFMLAGGLRTQIGGKGTSSADKASLFQTLRTTRSEDEMLAIITQLEESGQDLNVKDYTSILAALKRFKNWKQALEVFGRMRERGVEPNAITYNAVMGACGVAGRWKETLELFQTMTRRGLRPDSVSFGSLMIGLVRGGQWEQALDVLGEMKEKRMEITEGVYTTGITACEKGGQWVLALELLREMHLKGIAPSLFAYNAAIFACRRDKQWVQATALLGEMRQDGLIPDRNSYHGAMAACEEAEMWEGVMDLYEELRAMSLEPSRQSYEYVTRACREYLTTHGEDERLKNYLRLNKISPNVLTDESDVIFLAGPKILEFEGGVESLESEPEEQPTWMSFADDE 418
            MND +RIR T+  + QP DV++ GA  R   G  ++MRR L ALALCCSACAVQ F V                                       RPRG  +GGS    +LFMLAGGL TQ+GGK   + D ASLFQTLRTTR E+E+LA+I QL +  + LNVKDYTSILAALKRFKNWK+ALEVFGRM+ERGVEPNAITYNAVMGACG AGRWKET ELFQTM RRGLRPD+VS+GSLMIG VRGGQWEQALDVLG+MK +RM+ITEGVYTTGITACEKGGQWVLALELLREMHLKGI+PSLFAYNAAIFACRRDKQWVQATALLGEMRQDGLIPDRNSYHGAMA CEEAEMWEGVMDLYEELRAM LEPSRQSYEYVTRACREYLT+HGEDERLKNYLR+NKISPNVLTDESDVIFLAG KILE+EGG ES ES+ EEQPTWMSFADDE
Sbjct:    1 MNDEQRIRGTKRGDLQPPDVDL-GAGSRLRAGTRVTMRRHLAALALCCSACAVQGFAVLPGSSASRHHRSSHPATPCPGPMSTPCFVFSPACPPLELRPRGSLTGGS----ELFMLAGGLGTQVGGKSVRT-DTASLFQTLRTTRLEEEVLAVIAQLVDGERSLNVKDYTSILAALKRFKNWKEALEVFGRMQERGVEPNAITYNAVMGACGAAGRWKETQELFQTMIRRGLRPDAVSYGSLMIGFVRGGQWEQALDVLGQMKAQRMDITEGVYTTGITACEKGGQWVLALELLREMHLKGISPSLFAYNAAIFACRRDKQWVQATALLGEMRQDGLIPDRNSYHGAMATCEEAEMWEGVMDLYEELRAMGLEPSRQSYEYVTRACREYLTSHGEDERLKNYLRVNKISPNVLTDESDVIFLAGAKILEYEGGQESSESDLEEQPTWMSFADDE 448
The following BLAST results are available for this feature:
BLAST of NO07G02080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27154.11.900e-18374.89Pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02080NO07G02080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02080.1NO07G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02080.1.cds1NO07G02080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02080.1.cds2NO07G02080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02080.1 ID=NO07G02080.1|Name=NO07G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp
ATGAATGACAGACGAAGGATAAGAACGACTGAGGAGCAGGAGCAGCAGCC
GTCAGACGTAGAAGTAGCAGGAGCAGTAGATCGCCGGTCGCGGGGAGCAG
GAATGAGCATGCGACGGCAGCTCACAGCACTGGCCTTGTGCTGCTCGGCG
TGTGCCGTGCAAGCCTTTGTGGTGTCATCAAGACCACGTGGCGGCAGCAG
CGGCGGTAGCGGGAGCGACAGCCAGCTATTTATGTTGGCGGGGGGGCTCC
GCACACAGATTGGTGGGAAGGGCACCAGCTCCGCGGACAAAGCGAGCTTG
TTTCAGACATTGCGGACCACGCGTTCGGAAGACGAGATGCTGGCTATCAT
CACGCAGCTGGAGGAAAGCGGACAGGATTTAAATGTAAAGGATTATACGA
GCATACTGGCGGCCTTGAAGAGATTCAAAAATTGGAAGCAGGCTTTGGAG
GTATTTGGGCGGATGAGGGAAAGGGGGGTGGAGCCTAATGCCATTACCTA
TAACGCGGTGATGGGGGCATGCGGAGTAGCTGGGCGGTGGAAGGAGACAC
TGGAACTCTTTCAGACCATGACCCGACGGGGATTGAGGCCTGATTCAGTA
AGCTTTGGGTCTCTGATGATTGGACTGGTGAGGGGGGGGCAATGGGAGCA
GGCCTTGGATGTGCTGGGGGAGATGAAAGAGAAGCGGATGGAGATCACAG
AGGGGGTGTACACGACGGGCATCACGGCTTGCGAGAAGGGGGGACAGTGG
GTGCTGGCATTGGAATTGCTACGGGAGATGCATTTGAAGGGAATTGCTCC
GTCTCTCTTTGCTTACAATGCGGCGATATTCGCCTGCCGTCGAGACAAGC
AGTGGGTGCAGGCCACGGCCTTACTGGGCGAGATGCGACAAGATGGATTG
ATACCCGACCGGAATAGTTACCACGGGGCTATGGCTGCATGCGAGGAGGC
GGAGATGTGGGAGGGGGTAATGGATTTATACGAGGAACTCAGGGCCATGA
GCCTTGAGCCGTCGCGACAGAGCTACGAGTACGTAACACGCGCCTGCCGG
GAGTACCTGACCACGCACGGAGAAGACGAGCGGCTGAAGAATTACTTGAG
ACTGAACAAGATTTCCCCAAATGTGTTGACGGATGAGAGTGACGTCATTT
TTCTGGCGGGGCCGAAGATCTTGGAGTTTGAAGGTGGGGTAGAAAGCTTG
GAAAGCGAGCCGGAGGAGCAGCCGACATGGATGAGCTTCGCAGATGACGA
GTGA
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protein sequence of NO07G02080.1

>NO07G02080.1-protein ID=NO07G02080.1-protein|Name=NO07G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MNDRRRIRTTEEQEQQPSDVEVAGAVDRRSRGAGMSMRRQLTALALCCSA
CAVQAFVVSSRPRGGSSGGSGSDSQLFMLAGGLRTQIGGKGTSSADKASL
FQTLRTTRSEDEMLAIITQLEESGQDLNVKDYTSILAALKRFKNWKQALE
VFGRMRERGVEPNAITYNAVMGACGVAGRWKETLELFQTMTRRGLRPDSV
SFGSLMIGLVRGGQWEQALDVLGEMKEKRMEITEGVYTTGITACEKGGQW
VLALELLREMHLKGIAPSLFAYNAAIFACRRDKQWVQATALLGEMRQDGL
IPDRNSYHGAMAACEEAEMWEGVMDLYEELRAMSLEPSRQSYEYVTRACR
EYLTTHGEDERLKNYLRLNKISPNVLTDESDVIFLAGPKILEFEGGVESL
ESEPEEQPTWMSFADDE*
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mRNA from alignment at chr7:615609..616966+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02080.1 ID=NO07G02080.1|Name=NO07G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1358bp|location=Sequence derived from alignment at chr7:615609..616966+ (Nannochloropsis oceanica)
ATGAATGACAGACGAAGGATAAGAACGACTGAGGAGCAGGAGCAGCAGCC
GTCAGACGTAGAAGTAGCAGGAGCAGTAGATCGCCGGTCGCGGGGAGCAG
GAATGAGCATGCGACGGCAGCTCACAGCACTGGCCTTGTGCTGCTCGGCG
TGTGCCGTGCAAGCCTTTGTGGTGGTGCCTGTAATCAGTAATCATCCGCG
GTCTGCCCCTACCGGCTTCAGCTCCTCTCCCCCCCCACTTCCTCTGCTTC
CTCCGCTTCCCTCCCCCTTTTCCTTCAGTCATCAAGACCACGTGGCGGCA
GCAGCGGCGGTAGCGGGAGCGACAGCCAGCTATTTATGTTGGCGGGGGGG
CTCCGCACACAGATTGGTGGGAAGGGCACCAGCTCCGCGGACAAAGCGAG
CTTGTTTCAGACATTGCGGACCACGCGTTCGGAAGACGAGATGCTGGCTA
TCATCACGCAGCTGGAGGAAAGCGGACAGGATTTAAATGTAAAGGATTAT
ACGAGCATACTGGCGGCCTTGAAGAGATTCAAAAATTGGAAGCAGGCTTT
GGAGGTATTTGGGCGGATGAGGGAAAGGGGGGTGGAGCCTAATGCCATTA
CCTATAACGCGGTGATGGGGGCATGCGGAGTAGCTGGGCGGTGGAAGGAG
ACACTGGAACTCTTTCAGACCATGACCCGACGGGGATTGAGGCCTGATTC
AGTAAGCTTTGGGTCTCTGATGATTGGACTGGTGAGGGGGGGGCAATGGG
AGCAGGCCTTGGATGTGCTGGGGGAGATGAAAGAGAAGCGGATGGAGATC
ACAGAGGGGGTGTACACGACGGGCATCACGGCTTGCGAGAAGGGGGGACA
GTGGGTGCTGGCATTGGAATTGCTACGGGAGATGCATTTGAAGGGAATTG
CTCCGTCTCTCTTTGCTTACAATGCGGCGATATTCGCCTGCCGTCGAGAC
AAGCAGTGGGTGCAGGCCACGGCCTTACTGGGCGAGATGCGACAAGATGG
ATTGATACCCGACCGGAATAGTTACCACGGGGCTATGGCTGCATGCGAGG
AGGCGGAGATGTGGGAGGGGGTAATGGATTTATACGAGGAACTCAGGGCC
ATGAGCCTTGAGCCGTCGCGACAGAGCTACGAGTACGTAACACGCGCCTG
CCGGGAGTACCTGACCACGCACGGAGAAGACGAGCGGCTGAAGAATTACT
TGAGACTGAACAAGATTTCCCCAAATGTGTTGACGGATGAGAGTGACGTC
ATTTTTCTGGCGGGGCCGAAGATCTTGGAGTTTGAAGGTGGGGTAGAAAG
CTTGGAAAGCGAGCCGGAGGAGCAGCCGACATGGATGAGCTTCGCAGATG
ACGAGTGA
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Coding sequence (CDS) from alignment at chr7:615609..616966+

>NO07G02080.1 ID=NO07G02080.1|Name=NO07G02080.1|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at chr7:615609..616966+ (Nannochloropsis oceanica)
ATGAATGACAGACGAAGGATAAGAACGACTGAGGAGCAGGAGCAGCAGCC
GTCAGACGTAGAAGTAGCAGGAGCAGTAGATCGCCGGTCGCGGGGAGCAG
GAATGAGCATGCGACGGCAGCTCACAGCACTGGCCTTGTGCTGCTCGGCG
TGTGCCGTGCAAGCCTTTGTGGTGTCATCAAGACCACGTGGCGGCAGCAG
CGGCGGTAGCGGGAGCGACAGCCAGCTATTTATGTTGGCGGGGGGGCTCC
GCACACAGATTGGTGGGAAGGGCACCAGCTCCGCGGACAAAGCGAGCTTG
TTTCAGACATTGCGGACCACGCGTTCGGAAGACGAGATGCTGGCTATCAT
CACGCAGCTGGAGGAAAGCGGACAGGATTTAAATGTAAAGGATTATACGA
GCATACTGGCGGCCTTGAAGAGATTCAAAAATTGGAAGCAGGCTTTGGAG
GTATTTGGGCGGATGAGGGAAAGGGGGGTGGAGCCTAATGCCATTACCTA
TAACGCGGTGATGGGGGCATGCGGAGTAGCTGGGCGGTGGAAGGAGACAC
TGGAACTCTTTCAGACCATGACCCGACGGGGATTGAGGCCTGATTCAGTA
AGCTTTGGGTCTCTGATGATTGGACTGGTGAGGGGGGGGCAATGGGAGCA
GGCCTTGGATGTGCTGGGGGAGATGAAAGAGAAGCGGATGGAGATCACAG
AGGGGGTGTACACGACGGGCATCACGGCTTGCGAGAAGGGGGGACAGTGG
GTGCTGGCATTGGAATTGCTACGGGAGATGCATTTGAAGGGAATTGCTCC
GTCTCTCTTTGCTTACAATGCGGCGATATTCGCCTGCCGTCGAGACAAGC
AGTGGGTGCAGGCCACGGCCTTACTGGGCGAGATGCGACAAGATGGATTG
ATACCCGACCGGAATAGTTACCACGGGGCTATGGCTGCATGCGAGGAGGC
GGAGATGTGGGAGGGGGTAATGGATTTATACGAGGAACTCAGGGCCATGA
GCCTTGAGCCGTCGCGACAGAGCTACGAGTACGTAACACGCGCCTGCCGG
GAGTACCTGACCACGCACGGAGAAGACGAGCGGCTGAAGAATTACTTGAG
ACTGAACAAGATTTCCCCAAATGTGTTGACGGATGAGAGTGACGTCATTT
TTCTGGCGGGGCCGAAGATCTTGGAGTTTGAAGGTGGGGTAGAAAGCTTG
GAAAGCGAGCCGGAGGAGCAGCCGACATGGATGAGCTTCGCAGATGACGA
GTGA
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Synonyms
Publications