NO07G01900.1, NO07G01900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01900.1
Unique NameNO07G01900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1804
Alignment locationchr7:559051..560854 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:559051..560854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01900.1 vs.
Match: EWM27151.1 (hypothetical protein Naga_100010g42 [Nannochloropsis gaditana])

HSP 1 Score: 441.8 bits (1135), Expect = 2.900e-120
Identity = 250/459 (54.47%), Postives = 312/459 (67.97%), Query Frame = 0 
Query:    2 SSRRGQGIGKSGNVGRGDTETSRLLAGERASG-GGTFSTTS-----PQQQQHHA----HIQVFYQQQYHQDQQQQQGAGPLERMIKRALHGFALFLSFTFLGVLLLVLKGLGFDKMSGLAKLPPAATSYLAVFVPFWVADFVGWVMVGQTLIGTCSLRTRDVRDDRRHMVRLTAKEAQNTISLEMFPLVQVLVRALLTVTPFLICVTTAHILLALSLE-------RAQVPLWLALMPLVIWDFLALLSTWCLRTGSFSKALGWFLVLLSTLTLGLRFSTPPPQLLDVAWPVAGDEAPLWLAFTPFWALQILLLFMLLYVALQACCIRRYRLTSQHVACLVLYAGSLALLTLSSVLVAWRHDAWEVTLDHALRFRNFSETLAGIALFCGVGFGELGLYLLAAEEAELLITSNGYEDPMPLSRTARGWEPTGAGASNWLLLGRVEETATLMRRGGWRGRWG 444
            SSR+  G G  G V     E  RLL+G      GGTF++ +     PQ+Q HH     +   FYQ++       +   GPLER +K AL GFA++L+ TFLGV+ LVLK L FDK+   A+       Y  +F PFW AD V W++V   L  TCSLRT  V+ + R M   + +EAQ T+S EM PL Q+++RALL  TPFL+C+T AHILL + L+       R  V LWLA++P+V+W+ LAL+S  CLRTGSFSKALGW L+L +TL +GLRFS+PP  L  +    A   APLW+ FTPFWAL+ILLL  L+YV++QACC RRYRL+SQHV+C++LY  SL  L L+SV+ AWRH  WE  L+HALR +NFS+TL+GIA  C VGF ELG YL+AA+E E L TS+GYEDPMPLSRTARGWEPTGA  SNWLLLGR+EETA LMRRGG  G  G
Sbjct:    3 SSRQVVGHGNDGGVPVSAGEAGRLLSGSTTQTIGGTFNSETHLQQPPQKQLHHVIKDRNSPTFYQKRSRLVYLPR--VGPLERTMKWALTGFAIYLALTFLGVVFLVLKSLEFDKLPPFARTGLILKGYWLIFTPFWAADLVAWMVVLWALHWTCSLRTSGVQHESRIMAPSSHREAQKTLSTEMLPLFQIVMRALLNATPFLLCITAAHILLFIFLQSGGGNFGRPWVSLWLAILPIVLWEMLALISAICLRTGSFSKALGWLLILFATLMVGLRFSSPPFPLSSIPCIRAAHNAPLWVTFTPFWALEILLLATLVYVSIQACCARRYRLSSQHVSCIILYTSSLGFLALASVMFAWRHGTWESGLNHALRLQNFSDTLSGIATLCAVGFAELGFYLVAADEVEHLTTSHGYEDPMPLSRTARGWEPTGARVSNWLLLGRLEETARLMRRGGLAGTSG 459
The following BLAST results are available for this feature:
BLAST of NO07G01900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27151.12.900e-12054.47hypothetical protein Naga_100010g42 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01900NO07G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01900.1NO07G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01900.1.cds1NO07G01900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01900.1 ID=NO07G01900.1|Name=NO07G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1804bp
ATGTCTTCGCGACGGGGACAAGGCATTGGAAAGAGCGGTAATGTGGGCAG
AGGAGATACAGAGACTTCTCGGTTATTGGCGGGCGAGCGGGCGAGTGGAG
GCGGCACCTTTTCGACTACCAGTCCCCAACAACAGCAGCACCATGCCCAC
ATCCAGGTATTTTATCAGCAGCAGTACCATCAGGATCAGCAACAGCAGCA
GGGAGCGGGCCCACTGGAGCGCATGATCAAGCGGGCGCTCCATGGCTTCG
CTCTTTTCTTGAGTTTCACTTTCCTAGGTGTCCTTCTCCTCGTGCTCAAA
GGCCTTGGTTTCGACAAAATGTCAGGCTTAGCGAAACTACCACCGGCCGC
GACGAGTTACTTGGCGGTGTTTGTGCCATTCTGGGTCGCCGATTTTGTGG
GCTGGGTCATGGTGGGGCAGACGTTGATTGGCACCTGCTCTTTGCGTACC
CGGGACGTGCGGGACGACCGGCGACATATGGTCCGTCTCACGGCCAAGGA
GGCCCAAAATACCATCAGCCTTGAAATGTTCCCTTTGGTGCAAGTCTTGG
TCCGGGCTTTGCTAACTGTAACGCCCTTCTTGATATGCGTCACGACTGCG
CATATCCTGCTTGCCCTGAGCCTGGAGAGGGCCCAAGTGCCTCTATGGCT
AGCGTTAATGCCCCTCGTCATTTGGGATTTTTTGGCACTACTAAGCACAT
GGTGTCTGCGTACAGGTTCCTTCTCCAAAGCTCTTGGGTGGTTTTTGGTC
CTTCTTTCCACCTTAACGCTTGGCCTGCGTTTCTCGACCCCACCACCACA
ACTGCTCGACGTTGCCTGGCCGGTCGCCGGGGACGAAGCCCCGCTCTGGT
TAGCATTTACTCCCTTCTGGGCTCTACAAATCCTCCTCCTCTTCATGCTT
CTCTACGTTGCGCTTCAAGCTTGCTGCATCCGTCGCTACAGACTGACTTC
ACAGCATGTCGCCTGCTTAGTCTTGTATGCGGGCAGCCTTGCCCTTCTCA
CCCTCTCGTCCGTCCTTGTCGCCTGGCGGCACGACGCATGGGAGGTAACC
TTAGACCACGCCTTGCGCTTTCGGAATTTTTCCGAGACACTCGCAGGGAT
TGCACTCTTTTGTGGGGTGGGTTTTGGGGAGCTGGGACTGTATCTGTTGG
CGGCGGAGGAGGCTGAACTTTTAATAACGAGCAACGGATACGAAGACCCG
ATGCCTCTCAGTCGTACAGCCCGTGGATGGGAACCAACGGGGGCAGGAGC
GTCGAATTGGCTTTTACTTGGGAGGGTAGAGGAGACAGCGACGTTGATGA
GGAGGGGGGGGTGGCGGGGGCGGTGGGGACCGCAGCTAATGCGGCTGGTA
GGAGAATGGCGGGTGCGGCAAAAGGGGCTTTGCAGGGAGGGAGGGAAGGA
GAGAGTGGAGAAGGAAGGGCGGAGTTGCGAAGAAGCAATTCGGGTTCGTA
CGCTGATTTGTATGATGATTTATAGGAGAGGCTTGAGGGGGGGAGGGAGG
AAGAAAGAGTCTCTTGTTCGAGAACATGCTTATTGATGTATGGATTTTTT
CCCGGTTATGATGGTTTTGATTTGCTCTCTCCAGAAATGAGTAAAGACTA
TACGTAAAAAGGGACAAAAGGGGAGAAAGAAAGACGAGCAGTCCGCGAGG
AGGTTCTTCTTCTAGGGTAAGGCAGGTGACAACAAAGCACACATGTTTTG
AGACTGGGATGAAAAGACAAATCTTGTATTTAACCAAAACAAATAGGAAA
GCAATATATAATAGAAGGTAAAATTAAAGTAGCAATTAAACAGTAGGAGC
GGCG
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protein sequence of NO07G01900.1

>NO07G01900.1-protein ID=NO07G01900.1-protein|Name=NO07G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MSSRRGQGIGKSGNVGRGDTETSRLLAGERASGGGTFSTTSPQQQQHHAH
IQVFYQQQYHQDQQQQQGAGPLERMIKRALHGFALFLSFTFLGVLLLVLK
GLGFDKMSGLAKLPPAATSYLAVFVPFWVADFVGWVMVGQTLIGTCSLRT
RDVRDDRRHMVRLTAKEAQNTISLEMFPLVQVLVRALLTVTPFLICVTTA
HILLALSLERAQVPLWLALMPLVIWDFLALLSTWCLRTGSFSKALGWFLV
LLSTLTLGLRFSTPPPQLLDVAWPVAGDEAPLWLAFTPFWALQILLLFML
LYVALQACCIRRYRLTSQHVACLVLYAGSLALLTLSSVLVAWRHDAWEVT
LDHALRFRNFSETLAGIALFCGVGFGELGLYLLAAEEAELLITSNGYEDP
MPLSRTARGWEPTGAGASNWLLLGRVEETATLMRRGGWRGRWGPQLMRLV
GEWRVRQKGLCREGGKERVEKEGRSCEEAIRVRTLICMMIYRRGLRGGGR
KKESLVREHAY*
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mRNA from alignment at chr7:559051..560854-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01900.1 ID=NO07G01900.1|Name=NO07G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1804bp|location=Sequence derived from alignment at chr7:559051..560854- (Nannochloropsis oceanica)
ATGTCTTCGCGACGGGGACAAGGCATTGGAAAGAGCGGTAATGTGGGCAG
AGGAGATACAGAGACTTCTCGGTTATTGGCGGGCGAGCGGGCGAGTGGAG
GCGGCACCTTTTCGACTACCAGTCCCCAACAACAGCAGCACCATGCCCAC
ATCCAGGTATTTTATCAGCAGCAGTACCATCAGGATCAGCAACAGCAGCA
GGGAGCGGGCCCACTGGAGCGCATGATCAAGCGGGCGCTCCATGGCTTCG
CTCTTTTCTTGAGTTTCACTTTCCTAGGTGTCCTTCTCCTCGTGCTCAAA
GGCCTTGGTTTCGACAAAATGTCAGGCTTAGCGAAACTACCACCGGCCGC
GACGAGTTACTTGGCGGTGTTTGTGCCATTCTGGGTCGCCGATTTTGTGG
GCTGGGTCATGGTGGGGCAGACGTTGATTGGCACCTGCTCTTTGCGTACC
CGGGACGTGCGGGACGACCGGCGACATATGGTCCGTCTCACGGCCAAGGA
GGCCCAAAATACCATCAGCCTTGAAATGTTCCCTTTGGTGCAAGTCTTGG
TCCGGGCTTTGCTAACTGTAACGCCCTTCTTGATATGCGTCACGACTGCG
CATATCCTGCTTGCCCTGAGCCTGGAGAGGGCCCAAGTGCCTCTATGGCT
AGCGTTAATGCCCCTCGTCATTTGGGATTTTTTGGCACTACTAAGCACAT
GGTGTCTGCGTACAGGTTCCTTCTCCAAAGCTCTTGGGTGGTTTTTGGTC
CTTCTTTCCACCTTAACGCTTGGCCTGCGTTTCTCGACCCCACCACCACA
ACTGCTCGACGTTGCCTGGCCGGTCGCCGGGGACGAAGCCCCGCTCTGGT
TAGCATTTACTCCCTTCTGGGCTCTACAAATCCTCCTCCTCTTCATGCTT
CTCTACGTTGCGCTTCAAGCTTGCTGCATCCGTCGCTACAGACTGACTTC
ACAGCATGTCGCCTGCTTAGTCTTGTATGCGGGCAGCCTTGCCCTTCTCA
CCCTCTCGTCCGTCCTTGTCGCCTGGCGGCACGACGCATGGGAGGTAACC
TTAGACCACGCCTTGCGCTTTCGGAATTTTTCCGAGACACTCGCAGGGAT
TGCACTCTTTTGTGGGGTGGGTTTTGGGGAGCTGGGACTGTATCTGTTGG
CGGCGGAGGAGGCTGAACTTTTAATAACGAGCAACGGATACGAAGACCCG
ATGCCTCTCAGTCGTACAGCCCGTGGATGGGAACCAACGGGGGCAGGAGC
GTCGAATTGGCTTTTACTTGGGAGGGTAGAGGAGACAGCGACGTTGATGA
GGAGGGGGGGGTGGCGGGGGCGGTGGGGACCGCAGCTAATGCGGCTGGTA
GGAGAATGGCGGGTGCGGCAAAAGGGGCTTTGCAGGGAGGGAGGGAAGGA
GAGAGTGGAGAAGGAAGGGCGGAGTTGCGAAGAAGCAATTCGGGTTCGTA
CGCTGATTTGTATGATGATTTATAGGAGAGGCTTGAGGGGGGGAGGGAGG
AAGAAAGAGTCTCTTGTTCGAGAACATGCTTATTGATGTATGGATTTTTT
CCCGGTTATGATGGTTTTGATTTGCTCTCTCCAGAAATGAGTAAAGACTA
TACGTAAAAAGGGACAAAAGGGGAGAAAGAAAGACGAGCAGTCCGCGAGG
AGGTTCTTCTTCTAGGGTAAGGCAGGTGACAACAAAGCACACATGTTTTG
AGACTGGGATGAAAAGACAAATCTTGTATTTAACCAAAACAAATAGGAAA
GCAATATATAATAGAAGGTAAAATTAAAGTAGCAATTAAACAGTAGGAGC
GGCG
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Coding sequence (CDS) from alignment at chr7:559051..560854-

>NO07G01900.1 ID=NO07G01900.1|Name=NO07G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr7:559051..560854- (Nannochloropsis oceanica)
ATGTCTTCGCGACGGGGACAAGGCATTGGAAAGAGCGGTAATGTGGGCAG
AGGAGATACAGAGACTTCTCGGTTATTGGCGGGCGAGCGGGCGAGTGGAG
GCGGCACCTTTTCGACTACCAGTCCCCAACAACAGCAGCACCATGCCCAC
ATCCAGGTATTTTATCAGCAGCAGTACCATCAGGATCAGCAACAGCAGCA
GGGAGCGGGCCCACTGGAGCGCATGATCAAGCGGGCGCTCCATGGCTTCG
CTCTTTTCTTGAGTTTCACTTTCCTAGGTGTCCTTCTCCTCGTGCTCAAA
GGCCTTGGTTTCGACAAAATGTCAGGCTTAGCGAAACTACCACCGGCCGC
GACGAGTTACTTGGCGGTGTTTGTGCCATTCTGGGTCGCCGATTTTGTGG
GCTGGGTCATGGTGGGGCAGACGTTGATTGGCACCTGCTCTTTGCGTACC
CGGGACGTGCGGGACGACCGGCGACATATGGTCCGTCTCACGGCCAAGGA
GGCCCAAAATACCATCAGCCTTGAAATGTTCCCTTTGGTGCAAGTCTTGG
TCCGGGCTTTGCTAACTGTAACGCCCTTCTTGATATGCGTCACGACTGCG
CATATCCTGCTTGCCCTGAGCCTGGAGAGGGCCCAAGTGCCTCTATGGCT
AGCGTTAATGCCCCTCGTCATTTGGGATTTTTTGGCACTACTAAGCACAT
GGTGTCTGCGTACAGGTTCCTTCTCCAAAGCTCTTGGGTGGTTTTTGGTC
CTTCTTTCCACCTTAACGCTTGGCCTGCGTTTCTCGACCCCACCACCACA
ACTGCTCGACGTTGCCTGGCCGGTCGCCGGGGACGAAGCCCCGCTCTGGT
TAGCATTTACTCCCTTCTGGGCTCTACAAATCCTCCTCCTCTTCATGCTT
CTCTACGTTGCGCTTCAAGCTTGCTGCATCCGTCGCTACAGACTGACTTC
ACAGCATGTCGCCTGCTTAGTCTTGTATGCGGGCAGCCTTGCCCTTCTCA
CCCTCTCGTCCGTCCTTGTCGCCTGGCGGCACGACGCATGGGAGGTAACC
TTAGACCACGCCTTGCGCTTTCGGAATTTTTCCGAGACACTCGCAGGGAT
TGCACTCTTTTGTGGGGTGGGTTTTGGGGAGCTGGGACTGTATCTGTTGG
CGGCGGAGGAGGCTGAACTTTTAATAACGAGCAACGGATACGAAGACCCG
ATGCCTCTCAGTCGTACAGCCCGTGGATGGGAACCAACGGGGGCAGGAGC
GTCGAATTGGCTTTTACTTGGGAGGGTAGAGGAGACAGCGACGTTGATGA
GGAGGGGGGGGTGGCGGGGGCGGTGGGGACCGCAGCTAATGCGGCTGGTA
GGAGAATGGCGGGTGCGGCAAAAGGGGCTTTGCAGGGAGGGAGGGAAGGA
GAGAGTGGAGAAGGAAGGGCGGAGTTGCGAAGAAGCAATTCGGGTTCGTA
CGCTGATTTGTATGATGATTTATAGGAGAGGCTTGAGGGGGGGAGGGAGG
AAGAAAGAGTCTCTTGTTCGAGAACATGCTTATTGA
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Synonyms
Publications