NO07G01720.1, NO07G01720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01720.1
Unique NameNO07G01720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1530
Alignment locationchr7:518681..520571 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:518681..520571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01720.1 vs.
Match: BAU20969.1 (sulfoquinovosyldiacylglycerol 2 [Nannochloropsis sp. NIES-2145])

HSP 1 Score: 969.5 bits (2505), Expect = 3.900e-279
Identity = 481/481 (100.00%), Postives = 481/481 (100.00%), Query Frame = 0 
Query:   29 MLIVVVCLLSRPCHAFTPGVSRCPHTSKTLNVPGSTRLTPLLTALDDDEIAVVTQADAAVNAMFKKPLRVGLLVEPTPFTHVSGYANRFKEMLKHLHRTGDQVEICTTDDVPEAPKKFLDYQIQYTPGFRFPLYDHICLTFDYKMIAYNFLKLFRPHIIHVSTPGCLCFAAAIYARVLRIPLLFSYHTHLPIYARDYMGFVPGIVGLTRFVIRVVHNWADLTLVTSPQLKDELQGFGVKRVAVWKKGVDTDRFHPKFRSAAMRDRLTDGHPEAPLLVYVGRLGAEKKLKMLKGVMERIPAARLALVGGGPAEADLREHFKGTNTVFTGVLHGEELSQAFASADVFLMPSDSETLGFVVLESMASGVPVIGARAGGIPNVIAHGKTGFLAPVGDEEAFAVRALQLLGDKSLMVKMKEAGRAEAERLDWACAMEHLRNIHYKRAVMIHRRRTLSAFLAWAGTLKQRTVKSVKQSMEGMFATAT 510
            MLIVVVCLLSRPCHAFTPGVSRCPHTSKTLNVPGSTRLTPLLTALDDDEIAVVTQADAAVNAMFKKPLRVGLLVEPTPFTHVSGYANRFKEMLKHLHRTGDQVEICTTDDVPEAPKKFLDYQIQYTPGFRFPLYDHICLTFDYKMIAYNFLKLFRPHIIHVSTPGCLCFAAAIYARVLRIPLLFSYHTHLPIYARDYMGFVPGIVGLTRFVIRVVHNWADLTLVTSPQLKDELQGFGVKRVAVWKKGVDTDRFHPKFRSAAMRDRLTDGHPEAPLLVYVGRLGAEKKLKMLKGVMERIPAARLALVGGGPAEADLREHFKGTNTVFTGVLHGEELSQAFASADVFLMPSDSETLGFVVLESMASGVPVIGARAGGIPNVIAHGKTGFLAPVGDEEAFAVRALQLLGDKSLMVKMKEAGRAEAERLDWACAMEHLRNIHYKRAVMIHRRRTLSAFLAWAGTLKQRTVKSVKQSMEGMFATAT
Sbjct:    1 MLIVVVCLLSRPCHAFTPGVSRCPHTSKTLNVPGSTRLTPLLTALDDDEIAVVTQADAAVNAMFKKPLRVGLLVEPTPFTHVSGYANRFKEMLKHLHRTGDQVEICTTDDVPEAPKKFLDYQIQYTPGFRFPLYDHICLTFDYKMIAYNFLKLFRPHIIHVSTPGCLCFAAAIYARVLRIPLLFSYHTHLPIYARDYMGFVPGIVGLTRFVIRVVHNWADLTLVTSPQLKDELQGFGVKRVAVWKKGVDTDRFHPKFRSAAMRDRLTDGHPEAPLLVYVGRLGAEKKLKMLKGVMERIPAARLALVGGGPAEADLREHFKGTNTVFTGVLHGEELSQAFASADVFLMPSDSETLGFVVLESMASGVPVIGARAGGIPNVIAHGKTGFLAPVGDEEAFAVRALQLLGDKSLMVKMKEAGRAEAERLDWACAMEHLRNIHYKRAVMIHRRRTLSAFLAWAGTLKQRTVKSVKQSMEGMFATAT 481
The following BLAST results are available for this feature:
BLAST of NO07G01720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
BAU20969.13.900e-279100.00sulfoquinovosyldiacylglycerol 2 [Nannochloropsis s... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01720NO07G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01720.1NO07G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01720.1.cds1NO07G01720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01720.1.cds2NO07G01720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01720.1.cds3NO07G01720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01720.1 ID=NO07G01720.1|Name=NO07G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp
ATGGTGTCGTCCACAGGTTGTGGATGTCGCATGGGTGAAAATGACCAGGC
CGCGACCtccaccgcttccacttggacgccgatcatgttgatagtcgtcg
tttgccttctatcgcgtccgtgtcacgcgtttacgcccggcgtcagcaga
tgtccccacaccagcaagacgctcaatgtgcctggaagcacccgcctgac
tcccttgcttactgctctggacgacgacgaaatcgctgttgtgacccagg
cggacgctgccgtgaatgccatgtttaagaagccactgcgtgtggggctg
ttggtggagccgacgCCCTTCACGCACGTAAGCGGCTACGCGAATCGGTT
CAAGGAGATGCTCAAGCACCTGCACCGCACGGGGGACCAAGTGGAGATCT
GTACAACGGATGACGTCCCTGAAGCCCCCAAGAAGTTTCTTGATTACCAA
ATTCAGTACACCCCTGGCTTCCGTTTTCCGCTCTACGATCACATTTGCCT
AACATTTGACTATAAAATGATCGCGTACAATTTCCTCAAGCTCTTTCGCC
CACATATCATCCACGTCTCCACCCCTGGGTGTCTCTGTTTTGCTGCAGCA
ATCTACGCAAGGGTCCTGCGGATTCCCTTGCTCTTTTCGTATCACACCCA
CCTGCCCATTTACGCCCGAGACTACATGGGCTTTGTCCCTGGTATCGTCG
GCCTGACAAGATTCGTCATTCGTGTGGTGCACAACTGGGCGGACTTAACG
CTGGTGACCAGCCCACAGCTCAAGGACGAATTGCAGGGTTTTGGCGTGAA
GCGTGTGGCAGTTTGGAAGAAAGGGGTCGACACGGACCGTTTCCATCCGA
AGTTTCGGAGTGCGGCCATGCGGGATCGCTTGACGGATGGACATCCAGAG
GCGCCACTGTTAGTGTATGTGGGACGGTTGGGTGCCGAGAAGAAGTTGAA
GATGCTCAAAGGAGTGATGGAGAGGATTCCTGCGGCGAGGCTTGCGCTGG
TGGGTGGAGGACCAGCCGAGGCTGATCTGCGAGAGCATTTCAAGGGGACA
AATACTGTGTTTACGGGTGTGTTACACGGAGAGGAGTTAAGCCAGGCGTT
TGCCTCGGCGGACGTATTTTTGATGCCTTCGGATTCGGAGACGCTGGGCT
TCGTTGTGTTGGAGTCGATGGCGAGTGGGGTGCCTGTGATAGGGGCAAGA
GCGGGGGGGATCCCTAATGTGATTGCACATGGGAAGACGGGATTTTTGGC
CCCAGTGGGCGACGAGGAGGCGTTTGCGGTACGGGCACTGCAGTTGTTGG
GGGATAAATCATTGATGGTGAAGATGAAGGAGGCGGGGAGGGCGGAGGCG
GAGAGATTGGATTGGGCGTGCGCGATGGAACATTTGAGAAATATACATTA
CAAGCGTGCGGTGATGATTCACAGGCGAAGGACATTGAGTGCGTTTTTGG
CATGGGCGGGGACGTTGAAGCAGCGAACAGTGAAGAGCGTGAAGCAGAGT
ATGGAGGGTATGTTCGCGACAGCTACGTAA
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protein sequence of NO07G01720.1

>NO07G01720.1-protein ID=NO07G01720.1-protein|Name=NO07G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=510bp
MVSSTGCGCRMGENDQAATSTASTWTPIMLIVVVCLLSRPCHAFTPGVSR
CPHTSKTLNVPGSTRLTPLLTALDDDEIAVVTQADAAVNAMFKKPLRVGL
LVEPTPFTHVSGYANRFKEMLKHLHRTGDQVEICTTDDVPEAPKKFLDYQ
IQYTPGFRFPLYDHICLTFDYKMIAYNFLKLFRPHIIHVSTPGCLCFAAA
IYARVLRIPLLFSYHTHLPIYARDYMGFVPGIVGLTRFVIRVVHNWADLT
LVTSPQLKDELQGFGVKRVAVWKKGVDTDRFHPKFRSAAMRDRLTDGHPE
APLLVYVGRLGAEKKLKMLKGVMERIPAARLALVGGGPAEADLREHFKGT
NTVFTGVLHGEELSQAFASADVFLMPSDSETLGFVVLESMASGVPVIGAR
AGGIPNVIAHGKTGFLAPVGDEEAFAVRALQLLGDKSLMVKMKEAGRAEA
ERLDWACAMEHLRNIHYKRAVMIHRRRTLSAFLAWAGTLKQRTVKSVKQS
MEGMFATAT*
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mRNA from alignment at chr7:518681..520571-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01720.1 ID=NO07G01720.1|Name=NO07G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1891bp|location=Sequence derived from alignment at chr7:518681..520571- (Nannochloropsis oceanica)
ATGGTGTCGTCCACAGGTTGTGGATGTCGCATGGGTGAAAATGACCAGGC
CGCGACCTCCACCGCTTCCACTTGGACGCCGATCATGTTGATAGTCGTCG
TTTGCCTTCTATCGCGTCCGTGTCACGCGTTTACGCCCGGCGTCAGCAGA
TGTCCCCACACCAGCAAGACGCTCAATGTGCCTGGAAGCACCCGGTACGT
GGCGCGATGGCTCGTAAAAGCCGATCTTTGTAGCTTTTAAATCAGAGATT
CCAACAAAGGAGTCCCCCCCCTGCCTGATCCTATGCCCTTTCCCTTCCTC
TCCCCCCCCCTTCTTAATAGCCTGACTCCCTTGCTTACTGCTCTGGACGA
CGACGAAATCGCTGTTGTGACCCAGGCGGACGCTGCCGTGAATGCCATGT
TTAAGAAGCCACTGCGTGTGGGGCTGTTGGTGGAGCCGACGGTAAGTCTT
CTGGCTACGAATCTGCGGATTCCTTGTCCGTTTTCGCCCTCCCTCCCTTT
CTGGAGTTGCCGTGCGGTCAAGCTTACCACAATGCGCCACTACGTATCTT
ACACTTACGTCCGCGATGTTTTGACGGTGGTTTCTGCCTATGTCAAACTA
GAACCATGCCGTGCCTCTCTTGACCATGTATGTCACAACCTCTCACCACT
TCCTTCCATCCCTCCCTCCCCGCCAGCCCTTCACGCACGTAAGCGGCTAC
GCGAATCGGTTCAAGGAGATGCTCAAGCACCTGCACCGCACGGGGGACCA
AGTGGAGATCTGTACAACGGATGACGTCCCTGAAGCCCCCAAGAAGTTTC
TTGATTACCAAATTCAGTACACCCCTGGCTTCCGTTTTCCGCTCTACGAT
CACATTTGCCTAACATTTGACTATAAAATGATCGCGTACAATTTCCTCAA
GCTCTTTCGCCCACATATCATCCACGTCTCCACCCCTGGGTGTCTCTGTT
TTGCTGCAGCAATCTACGCAAGGGTCCTGCGGATTCCCTTGCTCTTTTCG
TATCACACCCACCTGCCCATTTACGCCCGAGACTACATGGGCTTTGTCCC
TGGTATCGTCGGCCTGACAAGATTCGTCATTCGTGTGGTGCACAACTGGG
CGGACTTAACGCTGGTGACCAGCCCACAGCTCAAGGACGAATTGCAGGGT
TTTGGCGTGAAGCGTGTGGCAGTTTGGAAGAAAGGGGTCGACACGGACCG
TTTCCATCCGAAGTTTCGGAGTGCGGCCATGCGGGATCGCTTGACGGATG
GACATCCAGAGGCGCCACTGTTAGTGTATGTGGGACGGTTGGGTGCCGAG
AAGAAGTTGAAGATGCTCAAAGGAGTGATGGAGAGGATTCCTGCGGCGAG
GCTTGCGCTGGTGGGTGGAGGACCAGCCGAGGCTGATCTGCGAGAGCATT
TCAAGGGGACAAATACTGTGTTTACGGGTGTGTTACACGGAGAGGAGTTA
AGCCAGGCGTTTGCCTCGGCGGACGTATTTTTGATGCCTTCGGATTCGGA
GACGCTGGGCTTCGTTGTGTTGGAGTCGATGGCGAGTGGGGTGCCTGTGA
TAGGGGCAAGAGCGGGGGGGATCCCTAATGTGATTGCACATGGGAAGACG
GGATTTTTGGCCCCAGTGGGCGACGAGGAGGCGTTTGCGGTACGGGCACT
GCAGTTGTTGGGGGATAAATCATTGATGGTGAAGATGAAGGAGGCGGGGA
GGGCGGAGGCGGAGAGATTGGATTGGGCGTGCGCGATGGAACATTTGAGA
AATATACATTACAAGCGTGCGGTGATGATTCACAGGCGAAGGACATTGAG
TGCGTTTTTGGCATGGGCGGGGACGTTGAAGCAGCGAACAGTGAAGAGCG
TGAAGCAGAGTATGGAGGGTATGTTCGCGACAGCTACGTAA
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Coding sequence (CDS) from alignment at chr7:518681..520571-

>NO07G01720.1 ID=NO07G01720.1|Name=NO07G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=1530bp|location=Sequence derived from alignment at chr7:518681..520571- (Nannochloropsis oceanica)
ATGGTGTCGTCCACAGGTTGTGGATGTCGCATGGGTGAAAATGACCAGGC
CGCGACCTCCACCGCTTCCACTTGGACGCCGATCATGTTGATAGTCGTCG
TTTGCCTTCTATCGCGTCCGTGTCACGCGTTTACGCCCGGCGTCAGCAGA
TGTCCCCACACCAGCAAGACGCTCAATGTGCCTGGAAGCACCCGCCTGAC
TCCCTTGCTTACTGCTCTGGACGACGACGAAATCGCTGTTGTGACCCAGG
CGGACGCTGCCGTGAATGCCATGTTTAAGAAGCCACTGCGTGTGGGGCTG
TTGGTGGAGCCGACGCCCTTCACGCACGTAAGCGGCTACGCGAATCGGTT
CAAGGAGATGCTCAAGCACCTGCACCGCACGGGGGACCAAGTGGAGATCT
GTACAACGGATGACGTCCCTGAAGCCCCCAAGAAGTTTCTTGATTACCAA
ATTCAGTACACCCCTGGCTTCCGTTTTCCGCTCTACGATCACATTTGCCT
AACATTTGACTATAAAATGATCGCGTACAATTTCCTCAAGCTCTTTCGCC
CACATATCATCCACGTCTCCACCCCTGGGTGTCTCTGTTTTGCTGCAGCA
ATCTACGCAAGGGTCCTGCGGATTCCCTTGCTCTTTTCGTATCACACCCA
CCTGCCCATTTACGCCCGAGACTACATGGGCTTTGTCCCTGGTATCGTCG
GCCTGACAAGATTCGTCATTCGTGTGGTGCACAACTGGGCGGACTTAACG
CTGGTGACCAGCCCACAGCTCAAGGACGAATTGCAGGGTTTTGGCGTGAA
GCGTGTGGCAGTTTGGAAGAAAGGGGTCGACACGGACCGTTTCCATCCGA
AGTTTCGGAGTGCGGCCATGCGGGATCGCTTGACGGATGGACATCCAGAG
GCGCCACTGTTAGTGTATGTGGGACGGTTGGGTGCCGAGAAGAAGTTGAA
GATGCTCAAAGGAGTGATGGAGAGGATTCCTGCGGCGAGGCTTGCGCTGG
TGGGTGGAGGACCAGCCGAGGCTGATCTGCGAGAGCATTTCAAGGGGACA
AATACTGTGTTTACGGGTGTGTTACACGGAGAGGAGTTAAGCCAGGCGTT
TGCCTCGGCGGACGTATTTTTGATGCCTTCGGATTCGGAGACGCTGGGCT
TCGTTGTGTTGGAGTCGATGGCGAGTGGGGTGCCTGTGATAGGGGCAAGA
GCGGGGGGGATCCCTAATGTGATTGCACATGGGAAGACGGGATTTTTGGC
CCCAGTGGGCGACGAGGAGGCGTTTGCGGTACGGGCACTGCAGTTGTTGG
GGGATAAATCATTGATGGTGAAGATGAAGGAGGCGGGGAGGGCGGAGGCG
GAGAGATTGGATTGGGCGTGCGCGATGGAACATTTGAGAAATATACATTA
CAAGCGTGCGGTGATGATTCACAGGCGAAGGACATTGAGTGCGTTTTTGG
CATGGGCGGGGACGTTGAAGCAGCGAACAGTGAAGAGCGTGAAGCAGAGT
ATGGAGGGTATGTTCGCGACAGCTACGTAA
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Synonyms
Publications