NO07G01520.1, NO07G01520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01520.1
Unique NameNO07G01520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1771
Alignment locationchr7:464157..466115 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:464157..466115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01520.1 vs.
Match: EWM27179.1 (mitochondrial import inner membrane translocase subunit tim50 [Nannochloropsis gaditana])

HSP 1 Score: 570.9 bits (1470), Expect = 3.600e-159
Identity = 313/443 (70.65%), Postives = 359/443 (81.04%), Query Frame = 0 
Query:    8 ASLGRRLLGRGVPKQ---PRRALRAAAEGEACSGAGAPLSTSTTTA-TSREARRKKWLKEKAAPGEGSAAGAASAKTAGVSQATAAQASSSTTAALSPAPSNPASTALKLIGGSVAAGGAYLFYQTSTTDQSIDDVLRASPVGFPYAWLYDSVFSPFINPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKFGWRYAKRPGVDRFLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFYQGKHIKDLSKLNRDLRKVVIIDDDPDAFRFQPQNGIRIKPFKDPKDKADSSLDKLRAFLLALVMEGVADDIPGVLRQFQGLDADQIGDAYKSMLRQAQIKEMERHQKGLGGLLRSQKAFQSIGHPLSTPAA-AAAAPARLSAKDIVGQYEGGTEGGKP-AGAAAAMVVPDEIKQSAPPRRGR 445
            ASL RR+  R   +    P+R+   AAEG+A  G GA  + +T  A TSREARR+KWLKEKAA  E SA G+ +  + G S A AA  +SS       APS+ AS A+KL+    AAG AY+ Y+TS  D+S DDVLRASP+G PYAWLYD+VFSPF+NPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPK+GWRYAKRPGVDR LQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRF+QGKH+KDLSKLNRDLRKVVI+DDDP+AF+FQP+NGIRIKPF++ KDKAD SL+KLR FLLALVMEGVADDIP VLRQFQGLDA+QIGDAY SMLR+AQ++E+E+ Q+GLGGLLRS +AFQS+GH L   AA + AAP RLSAKDIVG+  G  E  +P +  AAA  VPD+  Q+ PPR GR
Sbjct:   10 ASLCRRVCKRHFFRSRFPPQRSF-CAAEGQA-GGTGASNANATGIAITSREARRQKWLKEKAAAQEASAVGSKAGSSEGDSAAMAAGPASS-----GAAPSHAASAAIKLLATGGAAGVAYVVYETSAGDKSTDDVLRASPLGRPYAWLYDAVFSPFVNPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHATWDPKYGWRYAKRPGVDRLLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQGLIMHRLYKDSTRFHQGKHVKDLSKLNRDLRKVVIVDDDPEAFQFQPENGIRIKPFRNAKDKADRSLEKLRGFLLALVMEGVADDIPAVLRQFQGLDAEQIGDAYASMLRRAQVREIEKQQRGLGGLLRSGRAFQSMGHGLPGNAARSPAAPTRLSAKDIVGEPMG--ESAQPNSTVAAAAAVPDQPHQTPPPRPGR 443
The following BLAST results are available for this feature:
BLAST of NO07G01520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27179.13.600e-15970.65mitochondrial import inner membrane translocase su... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01520NO07G01520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01520.1NO07G01520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01520.1.cds1NO07G01520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01520.1.cds2NO07G01520.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01520.1 ID=NO07G01520.1|Name=NO07G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp
ATTTACAGAAGCATACAGGAGCATGACCAGTACCGCCGTAGTCGCCAGCC
TGGGTCGACGTCTGCTCGGGAGGGGCGTGCCAAAACAGCCACGACGCGCA
CTGCGAGCTGCTGCGGAAGGGGAGGCTTGCAGCGGGGCTGGCGCGCCATT
AAGCACAAGCACCACCACAGCCACATCTCGGGAAGCACGACGTAAGAAGT
GGCTGAAGGAAAAGGCAGCCCCTGGAGAAGGTTCGGCAGCGGGGGCTGCG
TCGGCCAAGACGGCCGGCGTATCACAAGCCACTGCTGCACAAGCATCCTC
ATCCACGACCGCAGCCCTTTCCCCCGCCCCTAGCAACCCTGCCTCCACTG
CCCTTAAACTCATCGGTGGGAGCGTAGCAGCAGGCGGGGCATATCTTTTC
TATCAAACTTCCACCACCGATCAAAGTATTGATGATGTCCTTCGTGCCTC
CCCCGTCGGCTTCCCCTACGCGTGGCTCTACGACTCCGTCTTCTCCCCCT
TCATTAATCCCTCCCGAGAAAAACTTCTCCCCGACTGGCACTCCATCCCC
AACATCCCTCCTGATGCCCCCTGCCCTCCCACCCTCGTGCTCGACCTCGA
AGACACCCTCGTCCACGCTACCTGGGACCCTAAATTCGGCTGGCGTTACG
CCAAACGGCCAGGGGTCGATCGCTTCCTCCAAGATCTGAGCAAATACTAT
GAAATCGTCCTCTTCTCCCCATCCAATTTCGGGGTCGTCGATCCCATCAC
CTGGACGCTGGACAAGCAAGGGCTGATCATGCACCGTCTCTACAAGGACT
CTACGCGGTTCTACCAGGGCAAACACATCAAGGATCTCTCAAAGCTTAAC
CGCGACCTTCGAAAAGTCGTCATCATCGACGACGACCCCGACGCATTCCG
ATTCCAACCGCAGAATGGCATCCGTATCAAGCCCTTCAAAGACCCCAAGG
ATAAAGCAGACTCCTCCCTGGACAAGCTCCGCGCTTTCCTCCTCGCCTTG
GTCATGGAAGGGGTCGCCGATGACATCCCGGGCGTGCTCAGACAGTTCCA
AGGCCTTGATGCCGATCAGATTGGCGACGCGTACAAGTCCATGCTCCGGC
AAGCCCAGATCAAGGAAATGGAAAGGCACCAAAAGGGGTTGGGAGGGCTC
TTGCGTTCGCAAAAAGCTTTTCAAAGCATCGGCCACCCCCTCTCTACCCC
AGCAGCAGCAGCAGCAGCACCTGCCCGACTGTCGGCCAAGGATATCGTGG
GTCAGTACGAGGGAGGGACAGAGGGAGGAAAGCCAGCAGGAGCAGCTGCA
GCGATGGTAGTACCGGACGAAATTAAGCAAAGCGCCCCCCCCCGCCGGGG
TCGGTGAAGAAGGGCAAGATCTGGGCGTGGTATCAGGACTATATGAAAGA
GGCGGAGGAGGACCAGAGGAGGAAATTGGAATTGTGGAGCAAGAAACAGC
AGCAGAGGGAGGAAGAGGCGAGGAGACGGGCAATGGCTGCGCAGGCGGCC
GGGGGTGTGTGAGATTCAGGGAAATTTGGAGGCAGGGAGAAAGGGAGAGA
GCGAGGAAAAGGGAGGGGGAGATAGGTATTGAAGGGGAAGTGAAGCGTTG
AGGGAAGGAAATTTAAAAGGAAAAATAAAATGAAGTCGAATCGGTGATTT
GCAAGTTTCTCATGATGTCTTCTTTTCTGAATATAGCTTTGCAGCGAAGT
GTTTTCGATTTTTTGTGGAAGCAAACCGTTGAGGACCGTTGAGGAGGAAA
TGGACATGAGAGTGGAAGGAC
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protein sequence of NO07G01520.1

>NO07G01520.1-protein ID=NO07G01520.1-protein|Name=NO07G01520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MTSTAVVASLGRRLLGRGVPKQPRRALRAAAEGEACSGAGAPLSTSTTTA
TSREARRKKWLKEKAAPGEGSAAGAASAKTAGVSQATAAQASSSTTAALS
PAPSNPASTALKLIGGSVAAGGAYLFYQTSTTDQSIDDVLRASPVGFPYA
WLYDSVFSPFINPSREKLLPDWHSIPNIPPDAPCPPTLVLDLEDTLVHAT
WDPKFGWRYAKRPGVDRFLQDLSKYYEIVLFSPSNFGVVDPITWTLDKQG
LIMHRLYKDSTRFYQGKHIKDLSKLNRDLRKVVIIDDDPDAFRFQPQNGI
RIKPFKDPKDKADSSLDKLRAFLLALVMEGVADDIPGVLRQFQGLDADQI
GDAYKSMLRQAQIKEMERHQKGLGGLLRSQKAFQSIGHPLSTPAAAAAAP
ARLSAKDIVGQYEGGTEGGKPAGAAAAMVVPDEIKQSAPPRRGR*
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mRNA from alignment at chr7:464157..466115+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01520.1 ID=NO07G01520.1|Name=NO07G01520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp|location=Sequence derived from alignment at chr7:464157..466115+ (Nannochloropsis oceanica)
ATTTACAGAAGCATACAGGAGCATGACCAGTACCGCCGTAGTCGCCAGCC
TGGGTCGACGTCTGCTCGGGAGGGGCGTGCCAAAACAGCCACGACGCGCA
CTGCGAGCTGCTGCGGAAGGGGAGGCTTGCAGCGGGGCTGGCGCGCCATT
AAGCACAAGCACCACCACAGCCACATCTCGGGAAGCACGACGTAAGAAGT
GGCTGAAGGAAAAGGCAGCCCCTGGAGAAGGTTCGGCAGCGGGGGCTGCG
TCGGCCAAGGTACGTTGCGTACGGGCTAAGGGTGGTGAGGTGGTGAAGGA
CACCTTGGAGGGGAGGACCTTAGAGGGAGCCAAGATGGAAAACATCATAC
GCACGCAGCACGATTGCAATTGATTGTTTTCTTGTTGCCCCTATACTACT
AAAATCTTTGATACTCATCATCTCCACCCCTCATCCTCATCCACCAGACG
GCCGGCGTATCACAAGCCACTGCTGCACAAGCATCCTCATCCACGACCGC
AGCCCTTTCCCCCGCCCCTAGCAACCCTGCCTCCACTGCCCTTAAACTCA
TCGGTGGGAGCGTAGCAGCAGGCGGGGCATATCTTTTCTATCAAACTTCC
ACCACCGATCAAAGTATTGATGATGTCCTTCGTGCCTCCCCCGTCGGCTT
CCCCTACGCGTGGCTCTACGACTCCGTCTTCTCCCCCTTCATTAATCCCT
CCCGAGAAAAACTTCTCCCCGACTGGCACTCCATCCCCAACATCCCTCCT
GATGCCCCCTGCCCTCCCACCCTCGTGCTCGACCTCGAAGACACCCTCGT
CCACGCTACCTGGGACCCTAAATTCGGCTGGCGTTACGCCAAACGGCCAG
GGGTCGATCGCTTCCTCCAAGATCTGAGCAAATACTATGAAATCGTCCTC
TTCTCCCCATCCAATTTCGGGGTCGTCGATCCCATCACCTGGACGCTGGA
CAAGCAAGGGCTGATCATGCACCGTCTCTACAAGGACTCTACGCGGTTCT
ACCAGGGCAAACACATCAAGGATCTCTCAAAGCTTAACCGCGACCTTCGA
AAAGTCGTCATCATCGACGACGACCCCGACGCATTCCGATTCCAACCGCA
GAATGGCATCCGTATCAAGCCCTTCAAAGACCCCAAGGATAAAGCAGACT
CCTCCCTGGACAAGCTCCGCGCTTTCCTCCTCGCCTTGGTCATGGAAGGG
GTCGCCGATGACATCCCGGGCGTGCTCAGACAGTTCCAAGGCCTTGATGC
CGATCAGATTGGCGACGCGTACAAGTCCATGCTCCGGCAAGCCCAGATCA
AGGAAATGGAAAGGCACCAAAAGGGGTTGGGAGGGCTCTTGCGTTCGCAA
AAAGCTTTTCAAAGCATCGGCCACCCCCTCTCTACCCCAGCAGCAGCAGC
AGCAGCACCTGCCCGACTGTCGGCCAAGGATATCGTGGGTCAGTACGAGG
GAGGGACAGAGGGAGGAAAGCCAGCAGGAGCAGCTGCAGCGATGGTAGTA
CCGGACGAAATTAAGCAAAGCGCCCCCCCCCGCCGGGGTCGGTGAAGAAG
GGCAAGATCTGGGCGTGGTATCAGGACTATATGAAAGAGGCGGAGGAGGA
CCAGAGGAGGAAATTGGAATTGTGGAGCAAGAAACAGCAGCAGAGGGAGG
AAGAGGCGAGGAGACGGGCAATGGCTGCGCAGGCGGCCGGGGGTGTGTGA
GATTCAGGGAAATTTGGAGGCAGGGAGAAAGGGAGAGAGCGAGGAAAAGG
GAGGGGGAGATAGGTATTGAAGGGGAAGTGAAGCGTTGAGGGAAGGAAAT
TTAAAAGGAAAAATAAAATGAAGTCGAATCGGTGATTTGCAAGTTTCTCA
TGATGTCTTCTTTTCTGAATATAGCTTTGCAGCGAAGTGTTTTCGATTTT
TTGTGGAAGCAAACCGTTGAGGACCGTTGAGGAGGAAATGGACATGAGAG
TGGAAGGAC
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Coding sequence (CDS) from alignment at chr7:464157..466115+

>NO07G01520.1 ID=NO07G01520.1|Name=NO07G01520.1|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at chr7:464157..466115+ (Nannochloropsis oceanica)
ATGACCAGTACCGCCGTAGTCGCCAGCCTGGGTCGACGTCTGCTCGGGAG
GGGCGTGCCAAAACAGCCACGACGCGCACTGCGAGCTGCTGCGGAAGGGG
AGGCTTGCAGCGGGGCTGGCGCGCCATTAAGCACAAGCACCACCACAGCC
ACATCTCGGGAAGCACGACGTAAGAAGTGGCTGAAGGAAAAGGCAGCCCC
TGGAGAAGGTTCGGCAGCGGGGGCTGCGTCGGCCAAGACGGCCGGCGTAT
CACAAGCCACTGCTGCACAAGCATCCTCATCCACGACCGCAGCCCTTTCC
CCCGCCCCTAGCAACCCTGCCTCCACTGCCCTTAAACTCATCGGTGGGAG
CGTAGCAGCAGGCGGGGCATATCTTTTCTATCAAACTTCCACCACCGATC
AAAGTATTGATGATGTCCTTCGTGCCTCCCCCGTCGGCTTCCCCTACGCG
TGGCTCTACGACTCCGTCTTCTCCCCCTTCATTAATCCCTCCCGAGAAAA
ACTTCTCCCCGACTGGCACTCCATCCCCAACATCCCTCCTGATGCCCCCT
GCCCTCCCACCCTCGTGCTCGACCTCGAAGACACCCTCGTCCACGCTACC
TGGGACCCTAAATTCGGCTGGCGTTACGCCAAACGGCCAGGGGTCGATCG
CTTCCTCCAAGATCTGAGCAAATACTATGAAATCGTCCTCTTCTCCCCAT
CCAATTTCGGGGTCGTCGATCCCATCACCTGGACGCTGGACAAGCAAGGG
CTGATCATGCACCGTCTCTACAAGGACTCTACGCGGTTCTACCAGGGCAA
ACACATCAAGGATCTCTCAAAGCTTAACCGCGACCTTCGAAAAGTCGTCA
TCATCGACGACGACCCCGACGCATTCCGATTCCAACCGCAGAATGGCATC
CGTATCAAGCCCTTCAAAGACCCCAAGGATAAAGCAGACTCCTCCCTGGA
CAAGCTCCGCGCTTTCCTCCTCGCCTTGGTCATGGAAGGGGTCGCCGATG
ACATCCCGGGCGTGCTCAGACAGTTCCAAGGCCTTGATGCCGATCAGATT
GGCGACGCGTACAAGTCCATGCTCCGGCAAGCCCAGATCAAGGAAATGGA
AAGGCACCAAAAGGGGTTGGGAGGGCTCTTGCGTTCGCAAAAAGCTTTTC
AAAGCATCGGCCACCCCCTCTCTACCCCAGCAGCAGCAGCAGCAGCACCT
GCCCGACTGTCGGCCAAGGATATCGTGGGTCAGTACGAGGGAGGGACAGA
GGGAGGAAAGCCAGCAGGAGCAGCTGCAGCGATGGTAGTACCGGACGAAA
TTAAGCAAAGCGCCCCCCCCCGCCGGGGTCGGTGA
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Synonyms
Publications