NO07G01400.1, NO07G01400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01400.1
Unique NameNO07G01400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length693
Alignment locationchr7:433595..434287 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:433595..434287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01400.1 vs.
Match: EWM27252.1 (Protein of unknown function DUF1772 [Nannochloropsis gaditana])

HSP 1 Score: 232.6 bits (592), Expect = 1.200e-57
Identity = 127/235 (54.04%), Postives = 161/235 (68.51%), Query Frame = 0 
Query:    1 MRWPTSEQRNTGGRLALEIVTLTSSALFAGAALYISLVAHPARCALASALKNTLEAK-----KSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKGEAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALMAHRTAGMEEPVVEEGEEEVGKGEPELQRTTTCFRSWSLTGGSFTQDLLEVWGNLHMVRTWLGLSGFLVLVSQLVATAHSRKRNGLM 231
            MRWP  + R+ GGR  LE  T  SSALFAGAALYISLV HPAR  LA++  +  ++K     KS IK+A+ +W +SYQRAAPLQ+FYA+VAGVGG+CNTFVL +  AWAWGGGL+  NVPFTLLC++P+N EL  RA  A    +T   + R    EE  VE  EEEV + +P  +R T C  SWS +G   T+ LL +WG LH VR  LGLSGFLVL + +++ AHSR+ + +M
Sbjct:    1 MRWPAFKDRDAGGRFILEAATFASSALFAGAALYISLVEHPARKTLAASSLDVPKSKGKAIKKSAIKSAVLQWRESYQRAAPLQVFYALVAGVGGMCNTFVLKEAAAWAWGGGLVAMNVPFTLLCLMPINKELGKRAEMAELEQETRGTSDRE---EETKVE--EEEVEEADPVSRRVTFCLGSWSCSGLPSTKHLLRLWGQLHAVRAVLGLSGFLVLTAHILSVAHSRRASKVM 230
The following BLAST results are available for this feature:
BLAST of NO07G01400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27252.11.200e-5754.04Protein of unknown function DUF1772 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01400NO07G01400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01400.1NO07G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01400.1.cds1NO07G01400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01400.1 ID=NO07G01400.1|Name=NO07G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=693bp
ATGCGTTGGCCGACTTCCGAACAACGCAATACCGGCGGACGCTTGGCACT
CGAGATCGTGACCCTTACGAGCTCCGCACTCTTTGCAGGAGCCGCGCTTT
ACATCTCTTTGGTGGCACACCCCGCACGCTGCGCCCTCGCCTCGGCTCTT
AAGAATACCCTGGAGGCCAAGAAGAGTGACATCAAAGCTGCGCTCTTCGA
ATGGAACGACTCTTACCAACGTGCCGCCCCTCTCCAGATCTTTTATGCTG
TTGTCGCGGGTGTGGGCGGGCTGTGCAATACCTTCGTGCTGGGAAAGGGG
GAGGCTTGGGCGTGGGGAGGGGGTTTGATGCTGGCGAACGTGCCATTTAC
CCTCCTCTGCATGGTGCCTGTGAACAATGAGCTCAAAGCGCGTGCCAGGG
CAGCAGCAGACATGAACAAGACGGCGCTGATGGCTCATCGCACGGCAGGC
ATGGAGGAGCCCGTGGTTGAAGAAGGAGAGGAGGAAGTGGGGAAAGGGGA
GCCAGAGCTGCAACGGACGACAACATGCTTTCGTTCCTGGTCCCTAACCG
GAGGTTCCTTCACGCAAGATCTACTAGAAGTATGGGGAAACTTGCATATG
GTGCGCACCTGGCTCGGCCTGAGTGGTTTCCTTGTCTTGGTTTCCCAACT
CGTGGCCACTGCTCACAGCCGCAAGCGCAACGGCTTGATGTAA
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protein sequence of NO07G01400.1

>NO07G01400.1-protein ID=NO07G01400.1-protein|Name=NO07G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MRWPTSEQRNTGGRLALEIVTLTSSALFAGAALYISLVAHPARCALASAL
KNTLEAKKSDIKAALFEWNDSYQRAAPLQIFYAVVAGVGGLCNTFVLGKG
EAWAWGGGLMLANVPFTLLCMVPVNNELKARARAAADMNKTALMAHRTAG
MEEPVVEEGEEEVGKGEPELQRTTTCFRSWSLTGGSFTQDLLEVWGNLHM
VRTWLGLSGFLVLVSQLVATAHSRKRNGLM*
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mRNA from alignment at chr7:433595..434287+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01400.1 ID=NO07G01400.1|Name=NO07G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=693bp|location=Sequence derived from alignment at chr7:433595..434287+ (Nannochloropsis oceanica)
ATGCGTTGGCCGACTTCCGAACAACGCAATACCGGCGGACGCTTGGCACT
CGAGATCGTGACCCTTACGAGCTCCGCACTCTTTGCAGGAGCCGCGCTTT
ACATCTCTTTGGTGGCACACCCCGCACGCTGCGCCCTCGCCTCGGCTCTT
AAGAATACCCTGGAGGCCAAGAAGAGTGACATCAAAGCTGCGCTCTTCGA
ATGGAACGACTCTTACCAACGTGCCGCCCCTCTCCAGATCTTTTATGCTG
TTGTCGCGGGTGTGGGCGGGCTGTGCAATACCTTCGTGCTGGGAAAGGGG
GAGGCTTGGGCGTGGGGAGGGGGTTTGATGCTGGCGAACGTGCCATTTAC
CCTCCTCTGCATGGTGCCTGTGAACAATGAGCTCAAAGCGCGTGCCAGGG
CAGCAGCAGACATGAACAAGACGGCGCTGATGGCTCATCGCACGGCAGGC
ATGGAGGAGCCCGTGGTTGAAGAAGGAGAGGAGGAAGTGGGGAAAGGGGA
GCCAGAGCTGCAACGGACGACAACATGCTTTCGTTCCTGGTCCCTAACCG
GAGGTTCCTTCACGCAAGATCTACTAGAAGTATGGGGAAACTTGCATATG
GTGCGCACCTGGCTCGGCCTGAGTGGTTTCCTTGTCTTGGTTTCCCAACT
CGTGGCCACTGCTCACAGCCGCAAGCGCAACGGCTTGATGTAA
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Coding sequence (CDS) from alignment at chr7:433595..434287+

>NO07G01400.1 ID=NO07G01400.1|Name=NO07G01400.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr7:433595..434287+ (Nannochloropsis oceanica)
ATGCGTTGGCCGACTTCCGAACAACGCAATACCGGCGGACGCTTGGCACT
CGAGATCGTGACCCTTACGAGCTCCGCACTCTTTGCAGGAGCCGCGCTTT
ACATCTCTTTGGTGGCACACCCCGCACGCTGCGCCCTCGCCTCGGCTCTT
AAGAATACCCTGGAGGCCAAGAAGAGTGACATCAAAGCTGCGCTCTTCGA
ATGGAACGACTCTTACCAACGTGCCGCCCCTCTCCAGATCTTTTATGCTG
TTGTCGCGGGTGTGGGCGGGCTGTGCAATACCTTCGTGCTGGGAAAGGGG
GAGGCTTGGGCGTGGGGAGGGGGTTTGATGCTGGCGAACGTGCCATTTAC
CCTCCTCTGCATGGTGCCTGTGAACAATGAGCTCAAAGCGCGTGCCAGGG
CAGCAGCAGACATGAACAAGACGGCGCTGATGGCTCATCGCACGGCAGGC
ATGGAGGAGCCCGTGGTTGAAGAAGGAGAGGAGGAAGTGGGGAAAGGGGA
GCCAGAGCTGCAACGGACGACAACATGCTTTCGTTCCTGGTCCCTAACCG
GAGGTTCCTTCACGCAAGATCTACTAGAAGTATGGGGAAACTTGCATATG
GTGCGCACCTGGCTCGGCCTGAGTGGTTTCCTTGTCTTGGTTTCCCAACT
CGTGGCCACTGCTCACAGCCGCAAGCGCAACGGCTTGATGTAA
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Synonyms
Publications