NO07G01220.1, NO07G01220.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G01220.1
Unique Name	NO07G01220.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2241
Alignment location	chr7:390364..392604 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:390364..392604 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G01220.1 vs.
Match: EWM27239.1 (hypothetical protein Naga_100038g16 [Nannochloropsis gaditana])

HSP 1 Score: 495.0 bits (1273), Expect = 4.200e-136
Identity = 345/664 (51.96%), Postives = 422/664 (63.55%), Query Frame = 0

Query:   92 TQGLGSMLSTPLTPSASLIASSVVEADAKQQQLLKDSLTADLKLLLHEFERFQQATAAAAGTGGVGEEEAAERSTKVEFFLGYIERVLHDLAGADASKLQDLEVRIKTSLLPLKGQVVSQLAAQNNNSPPPHKEQQSSWFHPSSTCSSLSSSSSVS---SVHTTPPGSPLAREETVMSTYGPFTHSRVAAADAVFLSSSSAASRLMPPVSFRRDQSDISGITSCSSSSSSCGGEGGAGHMDDLDLECFSLIMDE---AAATAPFTTAGNGGKDLPANGSCVDDDMTDAGSLTSEESS-VFVSSPRESSSSLSTVSTGLDPTSSNSGNKRTLPLEFPSSSSSSSSSSLSLATASSVSTDTLQQPLKRARSVILPTSSSSSSSCATHAPPCLASSSTSSSSSFSSPFSSSSVATVAAADVSKPLLRQVEYQCGACADTYTAASSLNPWWALERQECPKCKKVQVPRIDINLPANTMEYHPALLAEEGDDDDDDEVGGGREGGMMMMPG---GGDGHGHLEEREEGETSEKGSGGSSVLEEDEEAVLSPMQASQLLSLLEHARTCPGNHAAEKHQAVCTSAKYLMLHVRDCDGRTLDGEACGFSWCRPCKHLLGHLVRCYEAEKCQICCFSHQEEEEKVEKKVMMSVEEMIEEKGMRVDTYRSLTSL 746
            ++G  +    PL    S +ASSV EADAKQQQLLKDSLTADLKLLLHEFERFQQATA  +  G   E EA ER+ KVEFFLGYI +VL +LAGADA KLQ+LEVRIKTSLLPLKGQVV++LA+   +S      Q      PSS+ S  S SSS S   S HTTPP SP++ E+  +   G    +   AA             LMP V  +R  S  SG T+CS +S     E G G +D  D+EC SL+M+E           TA  GG++    G   D+D+TDA SL SEESS VF  SP E+S  L T+S GL       G KR        + S  S+ SL LA+AS  S +++QQ LKRARS ++P+ SS+S            S++T+SS S     S  S  +++ A   KP +RQVEYQCG CA++Y+AA+SLNPWWALE+QECP+CKK+Q+PRIDINLPANTM+YHPALLAEEGDDDD++E  G   GG  ++PG    G G G       GE S  G GG  V EE++    SP QASQ+L L+ HARTCPG+H +E H+AVCTS KYLMLHVRDCDG+TLDGEACGFSWCRPCKHLLGHLVRCYE+E+C IC     ++ E  E+ V    E       +R   YR+LTSL
Sbjct:   69 SEGRYTSFLAPLKSLTSPVASSVFEADAKQQQLLKDSLTADLKLLLHEFERFQQATALVSREGSK-EVEAMERAAKVEFFLGYIGKVLQELAGADAPKLQELEVRIKTSLLPLKGQVVNKLASSLLSSSALGGLQH----EPSSSASIPSPSSSPSSSCSTHTTPPISPVSGEKMTVQDDGRRERTHPTAA------------ALMPSVRVQRLDSSSSGATTCSENS-----EEGRGQLD--DMECLSLLMEEDGQGLGRPQDRTA--GGREW---GLGPDEDVTDAASLVSEESSNVFAPSPGEASEMLETISRGL-----GLGQKRL-------ALSEGSTGSLGLASASFTSVESMQQ-LKRARSTVIPSISSNS-----------ISTTTTSSVSVGHGSSDVSEPSMSVASAEKPQVRQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEEGDDDDEEE--GLGLGGSGLVPGEEFRGMGKG-------GEDSAVG-GGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSIC---RPQKREPCEEAVACKRE---TSGAVREGVYRALTSL 663

The following BLAST results are available for this feature:

BLAST of NO07G01220.1 vs.

BLAST of NO07G01220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27239.1	4.200e-136	51.96	hypothetical protein Naga_100038g16 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G01220	NO07G01220	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01220.1	NO07G01220.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01220.1.cds1	NO07G01220.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:390364..392604+
coding sequence from alignment at chr7:390364..392604+

mRNA sequence

>NO07G01220.1 ID=NO07G01220.1|Name=NO07G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp
ATGTCCTCCCCCAAGAACATTCTGGCCCCCGCAAGCTTGTCCCTAAACAA
TTACAATAAACCCAGCCACGATCTCGGCAGCCCAAAGACGCAACACCATC
ACCATGGCCTGCATCATCAGCACCAGCACAAGCAGCAGTACCAGCACCAA
CAGCAACTGCAGCACGCCCATGTTCTCGGTGGCAAATCAGTAGCCGGTTC
CAACAAGATCCTTCCTTTCACCTCATCTATGGATGAAGTTAAATATGCCG
CTGGCGGGCTGATCAAGCCCGGGACGCAAGGCCTGGGCAGCATGCTCTCT
ACACCCTTGACGCCCTCGGCTTCTCTTATTGCATCGTCGGTGGTAGAGGC
CGATGCAAAGCAACAACAACTGCTGAAGGATTCCCTCACCGCCGACCTCA
AATTGCTCCTGCACGAATTCGAACGCTTCCAGCAGGCCACTGCAGCAGCA
GCGGGAACAGGAGGCGTGGGCGAGGAGGAGGCAGCTGAGCGATCGACGAA
AGTGGAGTTCTTTTTGGGATACATTGAGCGAGTTCTCCACGATTTGGCAG
GGGCTGACGCATCGAAACTGCAGGATCTCGAGGTGCGGATCAAGACAAGT
CTACTACCACTCAAGGGCCAGGTGGTTAGCCAGCTTGCGGCGCAAAATAA
TAACTCCCCTCCTCCCCATAAGGAGCAGCAGTCATCTTGGTTCCATCCTT
CTTCCACCTGCTCCTCCCTCTCCTCCTCTTCTTCCGTCTCCAGCGTGCAC
ACAACTCCTCCTGGATCTCCCTTGGCAAGGGAGGAGACGGTGATGAGCAC
CTACGGTCCCTTTACCCACTCCCGCGTCGCAGCAGCAGACGCAGTCTTTC
TCTCCTCTTCCTCTGCTGCTTCTCGGCTGATGCCGCCTGTGAGTTTCCGG
AGGGATCAGAGTGACATAAGTGGGATTACGTCGTGCTCGTCATCATCGTC
GTCATGCGGGGGGGAAGGAGGTGCGGGGCATATGGACGATTTAGATTTGG
AGTGTTTTAGCTTGATAATGGACGAGGCTGCCGCTACTGCTCCTTTTACT
ACTGCAGGTAATGGTGGGAAGGATCTGCCGGCCAATGGCTCATGTGTTGA
TGATGACATGACGGATGCTGGCTCTCTAACTTCAGAGGAAAGCAGCGTGT
TTGTGTCCTCCCCCCGGGAGTCCTCCTCTTCGCTCAGCACTGTTAGTACG
GGCTTGGACCCAACAAGCAGCAACAGTGGAAATAAGCGGACCTTGCCCTT
AGAATTTCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCTTTCTCTGG
CCACAGCGTCCTCCGTATCTACAGACACTCTGCAGCAGCCGCTCAAGCGC
GCCCGCAGCGTCATCCTACCCACCAGCAGCAGCAGCAGCAGCAGTTGTGC
TACGCATGCACCTCCCTGCCTCGCCTCCTCCTCCACCTCCTCCTCTTCTT
CTTTCTCTTCCCCTTTCTCTTCCTCTTCGGTGGCGACAGTGGCAGCAGCA
GATGTCAGCAAGCCTCTCCTTCGTCAGGTTGAGTATCAGTGCGGTGCTTG
CGCCGACACCTACACCGCTGCCTCCTCCCTCAATCCCTGGTGGGCCCTCG
AGCGACAGGAGTGTCCCAAGTGCAAGAAGGTTCAAGTTCCACGCATTGAC
ATAAACCTGCCTGCCAACACCATGGAATACCACCCGGCTTTGCTCGCGGA
GGAAGGCGATGATGACGATGATGATGAGGTGGGAGGCGGGAGGGAGGGAG
GGATGATGATGATGCCGGGGGGAGGGGATGGACATGGACATTTGGAGGAA
AGAGAGGAGGGAGAGACGAGTGAGAAAGGGAGCGGTGGAAGTAGCGTACT
AGAGGAGGACGAGGAAGCAGTGTTGAGCCCTATGCAAGCTTCACAGCTGT
TGAGTTTGTTGGAGCATGCGCGGACATGCCCGGGCAATCATGCTGCCGAG
AAACACCAGGCTGTGTGTACGAGTGCCAAGTATCTCATGTTGCATGTGAG
GGATTGTGATGGCAGGACGTTAGATGGGGAGGCTTGTGGATTCTCGTGGT
GCAGGCCTTGCAAACACTTGCTCGGGCACCTGGTCCGGTGTTACGAAGCC
GAGAAGTGTCAGATCTGCTGTTTCTCACACCAAGAAGAGGAGGAGAAAGT
GGAAAAGAAGGTGATGATGAGTGTGGAGGAGATGATTGAGGAGAAAGGAA
TGAGGGTCGACACCTACAGGAGCTTGACGAGCTTGAGCTGA

protein sequence of NO07G01220.1

>NO07G01220.1-protein ID=NO07G01220.1-protein|Name=NO07G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=747bp
MSSPKNILAPASLSLNNYNKPSHDLGSPKTQHHHHGLHHQHQHKQQYQHQ
QQLQHAHVLGGKSVAGSNKILPFTSSMDEVKYAAGGLIKPGTQGLGSMLS
TPLTPSASLIASSVVEADAKQQQLLKDSLTADLKLLLHEFERFQQATAAA
AGTGGVGEEEAAERSTKVEFFLGYIERVLHDLAGADASKLQDLEVRIKTS
LLPLKGQVVSQLAAQNNNSPPPHKEQQSSWFHPSSTCSSLSSSSSVSSVH
TTPPGSPLAREETVMSTYGPFTHSRVAAADAVFLSSSSAASRLMPPVSFR
RDQSDISGITSCSSSSSSCGGEGGAGHMDDLDLECFSLIMDEAAATAPFT
TAGNGGKDLPANGSCVDDDMTDAGSLTSEESSVFVSSPRESSSSLSTVST
GLDPTSSNSGNKRTLPLEFPSSSSSSSSSSLSLATASSVSTDTLQQPLKR
ARSVILPTSSSSSSSCATHAPPCLASSSTSSSSSFSSPFSSSSVATVAAA
DVSKPLLRQVEYQCGACADTYTAASSLNPWWALERQECPKCKKVQVPRID
INLPANTMEYHPALLAEEGDDDDDDEVGGGREGGMMMMPGGGDGHGHLEE
REEGETSEKGSGGSSVLEEDEEAVLSPMQASQLLSLLEHARTCPGNHAAE
KHQAVCTSAKYLMLHVRDCDGRTLDGEACGFSWCRPCKHLLGHLVRCYEA
EKCQICCFSHQEEEEKVEKKVMMSVEEMIEEKGMRVDTYRSLTSLS*

mRNA from alignment at chr7:390364..392604+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G01220.1 ID=NO07G01220.1|Name=NO07G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp|location=Sequence derived from alignment at chr7:390364..392604+ (Nannochloropsis oceanica)
ATGTCCTCCCCCAAGAACATTCTGGCCCCCGCAAGCTTGTCCCTAAACAA
TTACAATAAACCCAGCCACGATCTCGGCAGCCCAAAGACGCAACACCATC
ACCATGGCCTGCATCATCAGCACCAGCACAAGCAGCAGTACCAGCACCAA
CAGCAACTGCAGCACGCCCATGTTCTCGGTGGCAAATCAGTAGCCGGTTC
CAACAAGATCCTTCCTTTCACCTCATCTATGGATGAAGTTAAATATGCCG
CTGGCGGGCTGATCAAGCCCGGGACGCAAGGCCTGGGCAGCATGCTCTCT
ACACCCTTGACGCCCTCGGCTTCTCTTATTGCATCGTCGGTGGTAGAGGC
CGATGCAAAGCAACAACAACTGCTGAAGGATTCCCTCACCGCCGACCTCA
AATTGCTCCTGCACGAATTCGAACGCTTCCAGCAGGCCACTGCAGCAGCA
GCGGGAACAGGAGGCGTGGGCGAGGAGGAGGCAGCTGAGCGATCGACGAA
AGTGGAGTTCTTTTTGGGATACATTGAGCGAGTTCTCCACGATTTGGCAG
GGGCTGACGCATCGAAACTGCAGGATCTCGAGGTGCGGATCAAGACAAGT
CTACTACCACTCAAGGGCCAGGTGGTTAGCCAGCTTGCGGCGCAAAATAA
TAACTCCCCTCCTCCCCATAAGGAGCAGCAGTCATCTTGGTTCCATCCTT
CTTCCACCTGCTCCTCCCTCTCCTCCTCTTCTTCCGTCTCCAGCGTGCAC
ACAACTCCTCCTGGATCTCCCTTGGCAAGGGAGGAGACGGTGATGAGCAC
CTACGGTCCCTTTACCCACTCCCGCGTCGCAGCAGCAGACGCAGTCTTTC
TCTCCTCTTCCTCTGCTGCTTCTCGGCTGATGCCGCCTGTGAGTTTCCGG
AGGGATCAGAGTGACATAAGTGGGATTACGTCGTGCTCGTCATCATCGTC
GTCATGCGGGGGGGAAGGAGGTGCGGGGCATATGGACGATTTAGATTTGG
AGTGTTTTAGCTTGATAATGGACGAGGCTGCCGCTACTGCTCCTTTTACT
ACTGCAGGTAATGGTGGGAAGGATCTGCCGGCCAATGGCTCATGTGTTGA
TGATGACATGACGGATGCTGGCTCTCTAACTTCAGAGGAAAGCAGCGTGT
TTGTGTCCTCCCCCCGGGAGTCCTCCTCTTCGCTCAGCACTGTTAGTACG
GGCTTGGACCCAACAAGCAGCAACAGTGGAAATAAGCGGACCTTGCCCTT
AGAATTTCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCTTTCTCTGG
CCACAGCGTCCTCCGTATCTACAGACACTCTGCAGCAGCCGCTCAAGCGC
GCCCGCAGCGTCATCCTACCCACCAGCAGCAGCAGCAGCAGCAGTTGTGC
TACGCATGCACCTCCCTGCCTCGCCTCCTCCTCCACCTCCTCCTCTTCTT
CTTTCTCTTCCCCTTTCTCTTCCTCTTCGGTGGCGACAGTGGCAGCAGCA
GATGTCAGCAAGCCTCTCCTTCGTCAGGTTGAGTATCAGTGCGGTGCTTG
CGCCGACACCTACACCGCTGCCTCCTCCCTCAATCCCTGGTGGGCCCTCG
AGCGACAGGAGTGTCCCAAGTGCAAGAAGGTTCAAGTTCCACGCATTGAC
ATAAACCTGCCTGCCAACACCATGGAATACCACCCGGCTTTGCTCGCGGA
GGAAGGCGATGATGACGATGATGATGAGGTGGGAGGCGGGAGGGAGGGAG
GGATGATGATGATGCCGGGGGGAGGGGATGGACATGGACATTTGGAGGAA
AGAGAGGAGGGAGAGACGAGTGAGAAAGGGAGCGGTGGAAGTAGCGTACT
AGAGGAGGACGAGGAAGCAGTGTTGAGCCCTATGCAAGCTTCACAGCTGT
TGAGTTTGTTGGAGCATGCGCGGACATGCCCGGGCAATCATGCTGCCGAG
AAACACCAGGCTGTGTGTACGAGTGCCAAGTATCTCATGTTGCATGTGAG
GGATTGTGATGGCAGGACGTTAGATGGGGAGGCTTGTGGATTCTCGTGGT
GCAGGCCTTGCAAACACTTGCTCGGGCACCTGGTCCGGTGTTACGAAGCC
GAGAAGTGTCAGATCTGCTGTTTCTCACACCAAGAAGAGGAGGAGAAAGT
GGAAAAGAAGGTGATGATGAGTGTGGAGGAGATGATTGAGGAGAAAGGAA
TGAGGGTCGACACCTACAGGAGCTTGACGAGCTTGAGCTGA

Coding sequence (CDS) from alignment at chr7:390364..392604+

>NO07G01220.1 ID=NO07G01220.1|Name=NO07G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=2241bp|location=Sequence derived from alignment at chr7:390364..392604+ (Nannochloropsis oceanica)
ATGTCCTCCCCCAAGAACATTCTGGCCCCCGCAAGCTTGTCCCTAAACAA
TTACAATAAACCCAGCCACGATCTCGGCAGCCCAAAGACGCAACACCATC
ACCATGGCCTGCATCATCAGCACCAGCACAAGCAGCAGTACCAGCACCAA
CAGCAACTGCAGCACGCCCATGTTCTCGGTGGCAAATCAGTAGCCGGTTC
CAACAAGATCCTTCCTTTCACCTCATCTATGGATGAAGTTAAATATGCCG
CTGGCGGGCTGATCAAGCCCGGGACGCAAGGCCTGGGCAGCATGCTCTCT
ACACCCTTGACGCCCTCGGCTTCTCTTATTGCATCGTCGGTGGTAGAGGC
CGATGCAAAGCAACAACAACTGCTGAAGGATTCCCTCACCGCCGACCTCA
AATTGCTCCTGCACGAATTCGAACGCTTCCAGCAGGCCACTGCAGCAGCA
GCGGGAACAGGAGGCGTGGGCGAGGAGGAGGCAGCTGAGCGATCGACGAA
AGTGGAGTTCTTTTTGGGATACATTGAGCGAGTTCTCCACGATTTGGCAG
GGGCTGACGCATCGAAACTGCAGGATCTCGAGGTGCGGATCAAGACAAGT
CTACTACCACTCAAGGGCCAGGTGGTTAGCCAGCTTGCGGCGCAAAATAA
TAACTCCCCTCCTCCCCATAAGGAGCAGCAGTCATCTTGGTTCCATCCTT
CTTCCACCTGCTCCTCCCTCTCCTCCTCTTCTTCCGTCTCCAGCGTGCAC
ACAACTCCTCCTGGATCTCCCTTGGCAAGGGAGGAGACGGTGATGAGCAC
CTACGGTCCCTTTACCCACTCCCGCGTCGCAGCAGCAGACGCAGTCTTTC
TCTCCTCTTCCTCTGCTGCTTCTCGGCTGATGCCGCCTGTGAGTTTCCGG
AGGGATCAGAGTGACATAAGTGGGATTACGTCGTGCTCGTCATCATCGTC
GTCATGCGGGGGGGAAGGAGGTGCGGGGCATATGGACGATTTAGATTTGG
AGTGTTTTAGCTTGATAATGGACGAGGCTGCCGCTACTGCTCCTTTTACT
ACTGCAGGTAATGGTGGGAAGGATCTGCCGGCCAATGGCTCATGTGTTGA
TGATGACATGACGGATGCTGGCTCTCTAACTTCAGAGGAAAGCAGCGTGT
TTGTGTCCTCCCCCCGGGAGTCCTCCTCTTCGCTCAGCACTGTTAGTACG
GGCTTGGACCCAACAAGCAGCAACAGTGGAAATAAGCGGACCTTGCCCTT
AGAATTTCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCTTTCTCTGG
CCACAGCGTCCTCCGTATCTACAGACACTCTGCAGCAGCCGCTCAAGCGC
GCCCGCAGCGTCATCCTACCCACCAGCAGCAGCAGCAGCAGCAGTTGTGC
TACGCATGCACCTCCCTGCCTCGCCTCCTCCTCCACCTCCTCCTCTTCTT
CTTTCTCTTCCCCTTTCTCTTCCTCTTCGGTGGCGACAGTGGCAGCAGCA
GATGTCAGCAAGCCTCTCCTTCGTCAGGTTGAGTATCAGTGCGGTGCTTG
CGCCGACACCTACACCGCTGCCTCCTCCCTCAATCCCTGGTGGGCCCTCG
AGCGACAGGAGTGTCCCAAGTGCAAGAAGGTTCAAGTTCCACGCATTGAC
ATAAACCTGCCTGCCAACACCATGGAATACCACCCGGCTTTGCTCGCGGA
GGAAGGCGATGATGACGATGATGATGAGGTGGGAGGCGGGAGGGAGGGAG
GGATGATGATGATGCCGGGGGGAGGGGATGGACATGGACATTTGGAGGAA
AGAGAGGAGGGAGAGACGAGTGAGAAAGGGAGCGGTGGAAGTAGCGTACT
AGAGGAGGACGAGGAAGCAGTGTTGAGCCCTATGCAAGCTTCACAGCTGT
TGAGTTTGTTGGAGCATGCGCGGACATGCCCGGGCAATCATGCTGCCGAG
AAACACCAGGCTGTGTGTACGAGTGCCAAGTATCTCATGTTGCATGTGAG
GGATTGTGATGGCAGGACGTTAGATGGGGAGGCTTGTGGATTCTCGTGGT
GCAGGCCTTGCAAACACTTGCTCGGGCACCTGGTCCGGTGTTACGAAGCC
GAGAAGTGTCAGATCTGCTGTTTCTCACACCAAGAAGAGGAGGAGAAAGT
GGAAAAGAAGGTGATGATGAGTGTGGAGGAGATGATTGAGGAGAAAGGAA
TGAGGGTCGACACCTACAGGAGCTTGACGAGCTTGAGCTGA

Synonyms

Publications