NO07G01190.1, NO07G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01190.1
Unique NameNO07G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length477
Alignment locationchr7:383974..384450 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:383974..384450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G01190.1 vs.
Match: EWM27253.1 (hypothetical protein Naga_100038g21 [Nannochloropsis gaditana])

HSP 1 Score: 73.9 bits (180), Expect = 4.900e-10
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 0 
Query:   62 EGGASAAFHDTVGMAFSRMFDACTNVVQTAETHTMQALQHMNQQLASATREKKEVEGQLQALLRVLEENKRAVLVIY 139
            E   +A+FH  VGMAFS MFDA  +VV  AETH  + L+ +++ + SA   K++V+ +L+ +LRVLEENKRA+ VIY
Sbjct:  100 EQDCAASFHKAVGMAFSHMFDAAIHVVVRAETHVKEQLESIDRLVESAEEGKRKVDAELETMLRVLEENKRAIHVIY 176
The following BLAST results are available for this feature:
BLAST of NO07G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27253.14.900e-1050.65hypothetical protein Naga_100038g21 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01190NO07G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01190.1NO07G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01190.1.cds1NO07G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01190.1 ID=NO07G01190.1|Name=NO07G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=477bp
ATGTTGAATGGCCACATCACCCACCAGCAGGAGCAGCGGCGGGAGCGGCG
ACAGCAGGAGCAGCGGCGGGAGCGGCGGCAGCAAGAGCAGCAAGAGCACT
TTCACACCGTGGCATACGCAGGGGAAAACGCCAACAAAAGAGGAGAAGGA
GGAGGAGGAGGGATGATGCAGGTAGGGGAGGAAGAAGGGGGAGCTTCAGC
GGCCTTCCATGACACAGTTGGCATGGCCTTTAGCCGTATGTTCGATGCAT
GCACGAATGTGGTGCAGACAGCGGAGACACACACAATGCAAGCCTTACAA
CACATGAACCAGCAGCTCGCGTCGGCGACGAGGGAGAAGAAGGAGGTGGA
GGGGCAGCTGCAGGCGCTCCTCCGGGTATTGGAGGAGAATAAGAGGGCCG
TCCTGGTGATCTATGAGGGGATAGGGGGGGGTTTGGAGGAAGTAAATGAG
AGAGGAAGGGAAGGGGACTTGGAGTAA
back to top

protein sequence of NO07G01190.1

>NO07G01190.1-protein ID=NO07G01190.1-protein|Name=NO07G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MLNGHITHQQEQRRERRQQEQRRERRQQEQQEHFHTVAYAGENANKRGEG
GGGGMMQVGEEEGGASAAFHDTVGMAFSRMFDACTNVVQTAETHTMQALQ
HMNQQLASATREKKEVEGQLQALLRVLEENKRAVLVIYEGIGGGLEEVNE
RGREGDLE*
back to top

mRNA from alignment at chr7:383974..384450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01190.1 ID=NO07G01190.1|Name=NO07G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=477bp|location=Sequence derived from alignment at chr7:383974..384450- (Nannochloropsis oceanica)
ATGTTGAATGGCCACATCACCCACCAGCAGGAGCAGCGGCGGGAGCGGCG
ACAGCAGGAGCAGCGGCGGGAGCGGCGGCAGCAAGAGCAGCAAGAGCACT
TTCACACCGTGGCATACGCAGGGGAAAACGCCAACAAAAGAGGAGAAGGA
GGAGGAGGAGGGATGATGCAGGTAGGGGAGGAAGAAGGGGGAGCTTCAGC
GGCCTTCCATGACACAGTTGGCATGGCCTTTAGCCGTATGTTCGATGCAT
GCACGAATGTGGTGCAGACAGCGGAGACACACACAATGCAAGCCTTACAA
CACATGAACCAGCAGCTCGCGTCGGCGACGAGGGAGAAGAAGGAGGTGGA
GGGGCAGCTGCAGGCGCTCCTCCGGGTATTGGAGGAGAATAAGAGGGCCG
TCCTGGTGATCTATGAGGGGATAGGGGGGGGTTTGGAGGAAGTAAATGAG
AGAGGAAGGGAAGGGGACTTGGAGTAA
back to top

Coding sequence (CDS) from alignment at chr7:383974..384450-

>NO07G01190.1 ID=NO07G01190.1|Name=NO07G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr7:383974..384450- (Nannochloropsis oceanica)
ATGTTGAATGGCCACATCACCCACCAGCAGGAGCAGCGGCGGGAGCGGCG
ACAGCAGGAGCAGCGGCGGGAGCGGCGGCAGCAAGAGCAGCAAGAGCACT
TTCACACCGTGGCATACGCAGGGGAAAACGCCAACAAAAGAGGAGAAGGA
GGAGGAGGAGGGATGATGCAGGTAGGGGAGGAAGAAGGGGGAGCTTCAGC
GGCCTTCCATGACACAGTTGGCATGGCCTTTAGCCGTATGTTCGATGCAT
GCACGAATGTGGTGCAGACAGCGGAGACACACACAATGCAAGCCTTACAA
CACATGAACCAGCAGCTCGCGTCGGCGACGAGGGAGAAGAAGGAGGTGGA
GGGGCAGCTGCAGGCGCTCCTCCGGGTATTGGAGGAGAATAAGAGGGCCG
TCCTGGTGATCTATGAGGGGATAGGGGGGGGTTTGGAGGAAGTAAATGAG
AGAGGAAGGGAAGGGGACTTGGAGTAA
back to top
Synonyms
Publications