NO07G01030.1, NO07G01030.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G01030.1
Unique Name	NO07G01030.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2218
Alignment location	chr7:332239..335312 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:332239..335312 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G01030.1 vs.
Match: EWM27291.1 (polyphosphoinositide binding protein ssh2 [Nannochloropsis gaditana])

HSP 1 Score: 387.1 bits (993), Expect = 8.900e-104
Identity = 196/307 (63.84%), Postives = 239/307 (77.85%), Query Frame = 0

Query:  227 GGKKGGKKLQHPQQSSSAT--------------KRGVLDMASLTEEEL-LWVEEVYQP-------LIAMPGIADRGLAVKMPIDRECVARYFIAAQWKPAMRGQPTVDAILRTLRWREDERVAVLEPEDVLAQAWDGYLYVNGTDRIGRPMIYFRPAFQANQHPEKAIQYLVYTLERALDLSREENGGVEAYSFVIDCSGFSLSNIPPVNIIKQTFTLLHHHYPTRVGFIVFLYTGSAFQLLWKVLTPLVSPMTRNKILFVPAGKEKNELLKRVEEEQLDERYGGQRGFSFVPHEYFGVSEEEAKKM 512
            GG++GG++ +    S S T              + G+L +A L    L L +   Y P       LI MPGI +RGLAV+M +DRECVARYF+A QWKP++RG+ TVD +LRT++WRE ERVA L PEDVLAQA DGYLYVNGTDR+GRP+IYF PAFQ N+ PEKAIQYLVYTLERALDLSR++  GVEAYSF+IDCSGFSLSN+PP+NIIKQTFTLLHHHYPTRVGFI FL+TGSAFQ LWK+LTPLVSPMTRNKILFVP G+E+  LL+RV+ ++LD +YGG + F+F  H+YFGVS+EE +++
Sbjct:    2 GGREGGREERREGGSRSRTGKMSLCSARKWHFERTGLLKVAYLPPSPLALSLPPSYLPPSSPPSALIHMPGIPERGLAVRMAVDRECVARYFVAGQWKPSLRGKTTVDHVLRTIQWRERERVAHLGPEDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERALDLSRQD--GVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFITFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPTGEEEKILLERVDPQELDRKYGGAKDFTFEAHDYFGVSKEEVRRL 306

The following BLAST results are available for this feature:

BLAST of NO07G01030.1 vs.

BLAST of NO07G01030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27291.1	8.900e-104	63.84	polyphosphoinositide binding protein ssh2 [Nannoch...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G01030	NO07G01030	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01030.1	NO07G01030.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01030.1.cds1	NO07G01030.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01030.1.cds2	NO07G01030.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01030.1.cds3	NO07G01030.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01030.1.cds4	NO07G01030.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01030.1.cds5	NO07G01030.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:332239..335312-
coding sequence from alignment at chr7:332239..335312-

mRNA sequence

>NO07G01030.1 ID=NO07G01030.1|Name=NO07G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2218bp
GGGAAGGGATGTGAGGGAGTAAAGGGAGGGGTGGGATAGCGAGGAGCACA
ACGCCAAGGAGGAGCCGATGAAAGCCCCCTCTCTGTGTATTTCTTTGATT
GTTTGAAACCGCACTGGAGCAGTACCTCGGACATCTTTTAGGTGGTCGTG
TATTCACATGACATGACACAGACAAAATACGCGCCGAGAATTCGGAATGT
CGGCGAGCGATGAGGGAGTGCGTACCGTTGCTCCTTGTCCCGTTCCCCTT
CCCACCACCACCACCACCACCTGCATGATTAAGGGGTATTCAAGTTGCAT
TTGCTGTCTAGTCACTTGCTCCTTATCCTGTACTTGTGCATGTGTGTCTG
TTCTAGCAGGCTGCTTCGCCAACCCATGCTTTGCCTCAACTTGGTTCGTA
ACGCTGTCTTAGCCCCGCCCCACACCCACCATACACGCAGCAAGAGATAC
AATCGCAACTACAACTGCAGTAGATGCACATTTAGCACGACGGGGCCTAC
ACGAAGCAAAAAGCATTCTACTGGCCTGGCAGGAAGTGGAGTAGCGGGAG
GGGCAAAAACAGACCATCCCATACCCAGGGAGGCAAAGATGACGGTCACA
AAGAAATCACTCTCCGTCCTCGTCCTCTGTACATTCGGTACCTTGTTGGC
AGCCTTGAAGTACCACCGGGGCGGGCCGACCACGCAAAGCGTCTTGCAAT
GGGGCAGCGACCGGCTTTTGTTGCTAGGCATAGGAGGGGAGAAGAAGGAA
GCAGATGGGGCAGCAGGGCGGTTGTTGGCGATTGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAACACAGCTGTTC
AAGAGGCGTTGCCTGATGACCGAGCCCTAATCCCCACCCGCGACCCCCAC
AAACGACTGAAACGCACCTTTTTCCTAGACGCCGGCAAGGCCGCCATGCA
AGTCATCCATTTGCCTCTTAAAACCATCATGCTCGGAATCCAGAAGCTGC
TCTCCCTTGGAAAAGGGGGAGGGAAGAAGGGAGGAAAGAAGCTGCAGCAC
CCGCAGCAGTCATCCTCTGCGACCAAGAGAGGAGTTTTGGACATGGCGTC
GTTAACGGAGGAAGAATTGTTGTGGGTGGAAGAGGTGTATCAACCCCTTA
TTGCCATGCCCGGCATCGCGGACCGGGGGCTTGCTGTCAAGATGCCCATC
GACCGGGAGTGTGTCGCTCGATACTTTATCGCTGCCCAGTGGAAGCCGGC
CATGAGGGGCCAGCCGACAGTGGACGCAATTTTACGCACTCTGAGATGGA
GGGAGGATGAACGAGTAGCAGTGTTGGAACCAGAAGACGTACTAGCACAG
GCCTGGGATGGCTACCTGTACGTCAACGGCACGGACAGGATTGGGCGGCC
GATGATTTATTTTAGACCGGCGTTTCAGGCCAATCAACATCCCGAGAAAG
CGATCCAGTACCTAGTCTACACCCTCGAACGTGCTCTGGACCTCTCCCGG
GAAGAGAACGGAGGGGTCGAGGCCTACTCCTTCGTGATTGATTGCAGTGG
ATTTTCACTTTCCAACATTCCCCCGGTCAATATCATCAAGCAGACATTTA
CGCTGCTTCATCACCACTATCCTACCCGTGTGGGGTTTATTGTCTTTTTG
TACACAGGCTCGGCGTTCCAGTTGCTCTGGAAGGTGCTTACCCCCTTGGT
CAGCCCTATGACGAGAAACAAGATTTTGTTTGTCCCTGCAGGGAAGGAGA
AGAATGAATTGTTGAAAAGAGTGGAAGAAGAGCAGTTGGACGAGAGATAT
GGAGGGCAGAGGGGCTTTTCATTTGTGCCGCATGAGTACTTTGGGGTGAG
TGAGGAGGAGGCGAAGAAGATGCATGAGAAGGAAGGGAAGAATGAAGTTA
AGGGAGGGGGGAAGGACAAAGGGAGGGACGAGGGGAAGAGAGGAAAGACA
TGTGGAGGGGGCGACAGCTAAACGCCCAAGTTGAGTCGTGAAAGCAGGAC
AAGGGGGATGGGAGGGAAGAGGGAAAGAGGGAGGGGAGCTGAAGGAAGTG
GGATGAGAGATTGATTCTCTCTTGTGAGTTTAACTGTTCAATAGTCGAGT
TTGTACAATTCAATTGTAGGGGAAATGTAGGTGCATGCAGAGTGCGTAGG
GGTAGTCCCCAGAGAGAGGGAGAGGGATGGCAATGATGGAAGGGGAGGGG
GGAGGTTGGTCATTGGCG

protein sequence of NO07G01030.1

>NO07G01030.1-protein ID=NO07G01030.1-protein|Name=NO07G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MCVCSSRLLRQPMLCLNLVRNAVLAPPHTHHTRSKRYNRNYNCSRCTFST
TGPTRSKKHSTGLAGSGVAGGAKTDHPIPREAKMTVTKKSLSVLVLCTFG
TLLAALKYHRGGPTTQSVLQWGSDRLLLLGIGGEKKEADGAAGRLLAIGG
GGGGGGGGGGGGGGGGNTAVQEALPDDRALIPTRDPHKRLKRTFFLDAGK
AAMQVIHLPLKTIMLGIQKLLSLGKGGGKKGGKKLQHPQQSSSATKRGVL
DMASLTEEELLWVEEVYQPLIAMPGIADRGLAVKMPIDRECVARYFIAAQ
WKPAMRGQPTVDAILRTLRWREDERVAVLEPEDVLAQAWDGYLYVNGTDR
IGRPMIYFRPAFQANQHPEKAIQYLVYTLERALDLSREENGGVEAYSFVI
DCSGFSLSNIPPVNIIKQTFTLLHHHYPTRVGFIVFLYTGSAFQLLWKVL
TPLVSPMTRNKILFVPAGKEKNELLKRVEEEQLDERYGGQRGFSFVPHEY
FGVSEEEAKKMHEKEGKNEVKGGGKDKGRDEGKRGKTCGGGDS*

mRNA from alignment at chr7:332239..335312-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G01030.1 ID=NO07G01030.1|Name=NO07G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=3074bp|location=Sequence derived from alignment at chr7:332239..335312- (Nannochloropsis oceanica)
GGGAAGGGATGTGAGGGAGTAAAGGGAGGGGTGGGATAGCGAGGAGCACA
ACGCCAAGGAGGAGCCGATGAAAGCCCCCTCTCTGTGTATTTCTTTGATT
GTTTGAAACCGCACTGGAGCAGTACCTCGGACATCTTTTAGGTGGTCGTG
TATTCACATGACATGACACAGACAAAATACGCGCCGAGAATTCGGAATGT
CGGCGAGCGATGAGGGAGTGCGTACCGTTGCTCCTTGTCCCGTTCCCCTT
CCCACCACCACCACCACCACCTGCATGATTAAGGGGTATTCAAGTTGCAT
TTGCTGTCTAGTCACTTGCTCCTTATCCTGTACTTGTGCATGTGTGTCTG
TTCTAGCAGGCTGCTTCGCCAACCCATGCTTTGCCTCAACTTGGTTCGTA
ACGCTGTCTTAGCCCCGCCCCACACCCACCATACACGCAGCAAGAGATAC
AATCGCAACTACAACTGCAGTAGATGCACATTTAGCACGACGGGGCCTAC
ACGAAGCAAAAAGCATTCTACTGGCCTGGCAGGAAGTGGAGTAGCGGGAG
GGGCAAAAACAGACCATCCCATACCCAGGGAGGCAAAGATGACGGTCACA
AAGAAATCACTCTCCGTCCTCGTCCTCTGTACATTCGGTACCTTGTTGGC
AGCCTTGAAGGTATGTGGGATGGGTGATCGTGTGTGGTGTGATGCGCGAT
GGATGCCAAAGCAAGGGAATGGCATCCTTCGCCGTTCCGCCCGGCATGGG
TCCATCTACACACAGCACAACCAGACTCACTTGCTTAGAATATGCTTGAA
ATAGTGCCCATGGTAACACTTATGATAGTATCGCTCGTTTCTCCCCGCCC
CAACACACACCCCTGTCCCTCTCTTCTCACTTCAGTCCACTCGCCCCGCT
TCCTACCTTCCTCAAACCACAACCAGTACCACCGGGGCGGGCCGACCACG
CAAAGCGTCTTGCAATGGGGCAGCGACCGGCTTTTGTTGCTAGGCATAGG
AGGGGAGAAGAAGGAAGCAGATGGGGCAGCAGGGCGGTTGTTGGCGATTG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAAACACAGCTGTTCAAGAGGCGTTGCCTGATGACCGAGGTAAGTACGT
CCGTATTGTCTTGGGCGACCACTGTGATCCCTCAGATCTGCAATATGCAT
GCATATCCGGTTTTTATTGCTTTACGGTGTGATGGCATGCTTCGGAAGTG
CCCGGTAGCAGTTGGATGGGTGGTTGTGTCGGTGAGTGCAGTAACCATGA
ATCCGCACTTTATTGGGTTCCTTGTTCGACCCCTTCCCCCCCTCCCTTTT
AATTTTTTAAAAAAGGAACGTATCGCATAAATTTTCTACCTCTTCTGACT
CTTTTTCCTTTCTCTCATTTCTCCCTCCTTTCCCAAAAACCACCAGCCCT
AATCCCCACCCGCGACCCCCACAAACGACTGAAACGCACCTTTTTCCTAG
ACGCCGGCAAGGCCGCCATGCAAGTCATCCATTTGCCTCTTAAAACCATC
ATGCTCGGAATCCAGAAGCTGCTCTCCCTTGGAAAAGGGGGAGGGAAGAA
GGGAGGAAAGAAGCTGCAGCACCCGCAGCAGTCATCCTCTGCGACCAAGA
GAGGAGTTTTGGACATGGCGTCGTTAACGGAGGAAGAATTGTTGTGGGTG
GAAGAGGTGTATCAACGTAAGTAGATAGGGTAGGAGGAAGAATGAGAAGG
AGGGAGGGGAGTAGGGAAAGATAGGGAAGGCGGGCAAAGGAGCTGGCATG
GATTCCCACAATCCCCTTACCCGTCCTCCATCCCTCTCTCCCTACCTCAA
GCCCTTATTGCCATGCCCGGCATCGCGGACCGGGGGCTTGCTGTCAAGAT
GCCCATCGACCGGGAGTGTGTCGCTCGATACTTTATCGCTGCCCAGTGGA
AGCCGGCCATGAGGGGCCAGCCGACAGTGGACGCAATTTTACGCACTCTG
AGATGGAGGGAGGATGAACGAGTAGCAGTGTTGGAACCAGAAGACGTACT
AGCACAGGCCTGGGATGGCTACCTGTACGTCAACGGCACGGACAGGATTG
GGCGGCCGATGATTTATTTTAGACCGGCGTTTCAGGTAGGATCCTGTCGT
CTCCCTCCTTCCTTCCCTCCCTCCCCGTATTCTTTTCCTCCGGTCTTCCT
TGACCTGTTGTTGGCTGGGTAGGACCCACACAACACCTTCCCTCAACCAC
ACACACGCACACCTCATCCTCCTCTCATCCCTAGGCCAATCAACATCCCG
AGAAAGCGATCCAGTACCTAGTCTACACCCTCGAACGTGCTCTGGACCTC
TCCCGGGAAGAGAACGGAGGGGTCGAGGCCTACTCCTTCGTGATTGATTG
CAGTGGATTTTCACTTTCCAACATTCCCCCGGTCAATATCATCAAGCAGA
CATTTACGCTGCTTCATCACCACTATCCTACCCGTGTGGGGTTTATTGTC
TTTTTGTACACAGGCTCGGCGTTCCAGTTGCTCTGGAAGGTGCTTACCCC
CTTGGTCAGCCCTATGACGAGAAACAAGATTTTGTTTGTCCCTGCAGGGA
AGGAGAAGAATGAATTGTTGAAAAGAGTGGAAGAAGAGCAGTTGGACGAG
AGATATGGAGGGCAGAGGGGCTTTTCATTTGTGCCGCATGAGTACTTTGG
GGTGAGTGAGGAGGAGGCGAAGAAGATGCATGAGAAGGAAGGGAAGAATG
AAGTTAAGGGAGGGGGGAAGGACAAAGGGAGGGACGAGGGGAAGAGAGGA
AAGACATGTGGAGGGGGCGACAGCTAAACGCCCAAGTTGAGTCGTGAAAG
CAGGACAAGGGGGATGGGAGGGAAGAGGGAAAGAGGGAGGGGAGCTGAAG
GAAGTGGGATGAGAGATTGATTCTCTCTTGTGAGTTTAACTGTTCAATAG
TCGAGTTTGTACAATTCAATTGTAGGGGAAATGTAGGTGCATGCAGAGTG
CGTAGGGGTAGTCCCCAGAGAGAGGGAGAGGGATGGCAATGATGGAAGGG
GAGGGGGGAGGTTGGTCATTGGCG

Coding sequence (CDS) from alignment at chr7:332239..335312-

>NO07G01030.1 ID=NO07G01030.1|Name=NO07G01030.1|organism=Nannochloropsis oceanica|type=CDS|length=1632bp|location=Sequence derived from alignment at chr7:332239..335312- (Nannochloropsis oceanica)
ATGTGTGTCTGTTCTAGCAGGCTGCTTCGCCAACCCATGCTTTGCCTCAA
CTTGGTTCGTAACGCTGTCTTAGCCCCGCCCCACACCCACCATACACGCA
GCAAGAGATACAATCGCAACTACAACTGCAGTAGATGCACATTTAGCACG
ACGGGGCCTACACGAAGCAAAAAGCATTCTACTGGCCTGGCAGGAAGTGG
AGTAGCGGGAGGGGCAAAAACAGACCATCCCATACCCAGGGAGGCAAAGA
TGACGGTCACAAAGAAATCACTCTCCGTCCTCGTCCTCTGTACATTCGGT
ACCTTGTTGGCAGCCTTGAAGTACCACCGGGGCGGGCCGACCACGCAAAG
CGTCTTGCAATGGGGCAGCGACCGGCTTTTGTTGCTAGGCATAGGAGGGG
AGAAGAAGGAAGCAGATGGGGCAGCAGGGCGGTTGTTGGCGATTGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAA
CACAGCTGTTCAAGAGGCGTTGCCTGATGACCGAGCCCTAATCCCCACCC
GCGACCCCCACAAACGACTGAAACGCACCTTTTTCCTAGACGCCGGCAAG
GCCGCCATGCAAGTCATCCATTTGCCTCTTAAAACCATCATGCTCGGAAT
CCAGAAGCTGCTCTCCCTTGGAAAAGGGGGAGGGAAGAAGGGAGGAAAGA
AGCTGCAGCACCCGCAGCAGTCATCCTCTGCGACCAAGAGAGGAGTTTTG
GACATGGCGTCGTTAACGGAGGAAGAATTGTTGTGGGTGGAAGAGGTGTA
TCAACCCCTTATTGCCATGCCCGGCATCGCGGACCGGGGGCTTGCTGTCA
AGATGCCCATCGACCGGGAGTGTGTCGCTCGATACTTTATCGCTGCCCAG
TGGAAGCCGGCCATGAGGGGCCAGCCGACAGTGGACGCAATTTTACGCAC
TCTGAGATGGAGGGAGGATGAACGAGTAGCAGTGTTGGAACCAGAAGACG
TACTAGCACAGGCCTGGGATGGCTACCTGTACGTCAACGGCACGGACAGG
ATTGGGCGGCCGATGATTTATTTTAGACCGGCGTTTCAGGCCAATCAACA
TCCCGAGAAAGCGATCCAGTACCTAGTCTACACCCTCGAACGTGCTCTGG
ACCTCTCCCGGGAAGAGAACGGAGGGGTCGAGGCCTACTCCTTCGTGATT
GATTGCAGTGGATTTTCACTTTCCAACATTCCCCCGGTCAATATCATCAA
GCAGACATTTACGCTGCTTCATCACCACTATCCTACCCGTGTGGGGTTTA
TTGTCTTTTTGTACACAGGCTCGGCGTTCCAGTTGCTCTGGAAGGTGCTT
ACCCCCTTGGTCAGCCCTATGACGAGAAACAAGATTTTGTTTGTCCCTGC
AGGGAAGGAGAAGAATGAATTGTTGAAAAGAGTGGAAGAAGAGCAGTTGG
ACGAGAGATATGGAGGGCAGAGGGGCTTTTCATTTGTGCCGCATGAGTAC
TTTGGGGTGAGTGAGGAGGAGGCGAAGAAGATGCATGAGAAGGAAGGGAA
GAATGAAGTTAAGGGAGGGGGGAAGGACAAAGGGAGGGACGAGGGGAAGA
GAGGAAAGACATGTGGAGGGGGCGACAGCTAA

Synonyms

Publications