NO07G00970.1, NO07G00970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00970.1
Unique NameNO07G00970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2172
Alignment locationchr7:314008..316435 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:314008..316435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G00970.1 vs.
Match: EWM27286.1 (abc transporter atp-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1100.1 bits (2844), Expect = 0.000e+0
Identity = 554/663 (83.56%), Postives = 587/663 (88.54%), Query Frame = 0 
Query:    5 SLILGLLASGASAFFLAPTPFHHHSS------HSTGVENGAVAITRTRINPLSMGPLNAANLKKQQKGGKKAGKGGAGKSKGGGGSGGGGNGNSVIDTNKREYIYQMHRMSKTFGKGDGSKPVLKDISLSFYPGVKIGVLGGNGAGKSTLIKIMAGLDENFNGEARPARWAKVGYLPQEPQLEGPTVADELERAVVETRGLLKEYAGVSGSLGKADLTPEEQEKLSTRMDELQSAIEAKNGWELDRTLERAMDALRCPPSDALVDQLSGGERRRVALCHLLLQRPDLLLLDEPTNHLDCESVAWLEDFLRTYTGTVVAITHDRYFLDNVAGWILELDRGEGIPFEGNYSGWLERKAKRMEQEGREDDKRKKALARELEWMRMSPKARQTKAKARITSYEQMVQADEDARQNARGGPTNIYIPPGPPLAQKVVEAEGLGKWYGDRLLWDKVSFSLPRGGVVGVIGANGVGKSTLFKLIAGLEKPDQGTLTISDKVKVMYVDQNREGVSDPNKTVFDTIAEGAEEIELGNRVVNARQYAGWFNFKGADQQKPVGVLSGGERNRLCLAQTLKQGGNLLLLDEPTNDLDNDTLRALEDAIENYAGCAVIISHDRYFLDRVATHILAFEDDGNVTWFEGDFSEYQRDLMARNGGVEPKRPKFRPLPTV 662
            +L+LGL+   A+AFF+   P    S+         G    +    +TR+NPL MGPLNAANLKK+QKGGKKA KGG GK KG    GGGG GNSVIDTNKREYIYQMHRMSKTFGKGDGSKPVLKDISLSFYPGVKIGVLGGNGAGKSTLIKIMAG+D++FNGEARPARWAK+GYLPQEP+LEGPTV DELE+AV ETRGLLKEY  VS SLGK DLT  EQE L+ RMDELQS IEA NGWELDR LERAMDALRCPP +A+V  LSGGERRRVALC LLL RPDLLLLDEPTNHLD ESVAWLEDFL  Y GTVVAITHDRYFLDNVAGWILELDRGEGIPFEGNYSGWLERKAKR+EQE RED+KR KAL+RELEWMRMSPKARQTKAKARITSYEQMVQADE+AR+N+R GPTNIYIPPGPPLA KVVEAE LGKWYGDRLLWDKVSFSLPRGGVVGVIGANGVGKSTLFKLIAGLE PDQG L++ D VKVMYVDQNRE V+DP KTV+DT+A+GAE+IELG RVVN+R Y GWFNFKGADQQKPVGVLSGGERNRLCLAQTLKQGGNLLLLDEPTNDLD DTLRALEDAIE YAGCAVIISHDRYFLDRVATHILAFEDDGNV WFEGDFSEYQRDL ARNGGVEPKRPKFRPLPTV
Sbjct:    6 ALVLGLMVLDATAFFIGTAPNFQFSTWPSTWKQDVGSHPLSAKGIKTRLNPLRMGPLNAANLKKKQKGGKKASKGGGGKGKG----GGGGGGNSVIDTNKREYIYQMHRMSKTFGKGDGSKPVLKDISLSFYPGVKIGVLGGNGAGKSTLIKIMAGVDDDFNGEARPARWAKLGYLPQEPELEGPTVGDELEKAVAETRGLLKEYETVSASLGKPDLTSNEQETLNLRMDELQSEIEANNGWELDRMLERAMDALRCPPQEAIVANLSGGERRRVALCRLLLTRPDLLLLDEPTNHLDAESVAWLEDFLHDYKGTVVAITHDRYFLDNVAGWILELDRGEGIPFEGNYSGWLERKAKRLEQEAREDNKRAKALSRELEWMRMSPKARQTKAKARITSYEQMVQADEEARENSRSGPTNIYIPPGPPLAAKVVEAENLGKWYGDRLLWDKVSFSLPRGGVVGVIGANGVGKSTLFKLIAGLEAPDQGALSLGDTVKVMYVDQNREAVADPTKTVYDTVADGAEQIELGKRVVNSRAYLGWFNFKGADQQKPVGVLSGGERNRLCLAQTLKQGGNLLLLDEPTNDLDVDTLRALEDAIEAYAGCAVIISHDRYFLDRVATHILAFEDDGNVVWFEGDFSEYQRDLQARNGGVEPKRPKFRPLPTV 664
The following BLAST results are available for this feature:
BLAST of NO07G00970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27286.10.000e+083.56abc transporter atp-binding protein [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00970NO07G00970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00970.1NO07G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00970.1.cds1NO07G00970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00970.1.cds2NO07G00970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00970.1 ID=NO07G00970.1|Name=NO07G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp
CAACAGGATTTTGAGCAGTATGCGGTTGACGAGTCTGATCCTGGGGCTGC
TAGCCTCGGGCGCGAGTGCTTTCTTCCTTGCCCCGACGCCTTTCCATCAT
CACTCCTCGCATTCAACCGGGGTCGAGAATGGGGCAGTGGCCATTACTAG
GACTCGCATCAATCCCCTCTCCATGGGGCCCTTAAACGCAGCCAACCTCA
AGAAGCAGCAAAAAGGAGGCAAGAAAGCTGGCAAGGGCGGCGCAGGCAAA
AGCAAAGGTGGTGGCGGCAGCGGCGGCGGTGGAAATGGTAACAGCGTGAT
CGACACGAACAAGCGCGAGTACATTTATCAAATGCATCGCATGAGCAAAA
CCTTTGGAAAAGGCGACGGGTCCAAGCCGGTGCTAAAGGATATTTCACTC
TCCTTCTACCCGGGCGTGAAAATCGGTGTGTTGGGTGGGAATGGCGCAGG
AAAGTCTACCCTTATCAAAATCATGGCTGGGTTGGACGAGAATTTCAACG
GCGAGGCCCGGCCGGCGCGCTGGGCCAAGGTAGGGTACCTCCCTCAGGAA
CCGCAGCTTGAAGGGCCGACAGTGGCAGACGAGTTAGAAAGGGCCGTAGT
AGAAACACGGGGGCTATTGAAAGAATATGCCGGCGTGAGTGGTTCGTTGG
GCAAGGCCGATTTGACACCGGAGGAGCAAGAGAAGCTGAGCACTCGCATG
GACGAGTTGCAGAGTGCGATCGAGGCGAAGAACGGGTGGGAGTTGGATAG
GACGCTGGAGAGGGCGATGGATGCATTGCGGTGCCCACCATCCGATGCAC
TGGTCGATCAGTTGTCCGGAGGAGAGCGCCGCCGGGTAGCATTGTGCCAC
CTCTTGCTGCAGCGCCCGGACTTGTTGCTCCTCGACGAGCCCACGAATCA
TTTAGACTGCGAATCTGTGGCGTGGCTCGAGGACTTTCTGCGAACGTATA
CCGGAACGGTGGTCGCCATCACGCATGACCGTTATTTCCTTGACAATGTT
GCTGGTTGGATCCTTGAACTAGACCGGGGGGAGGGGATTCCCTTTGAGGG
CAACTACTCCGGCTGGCTCGAGCGCAAGGCCAAGCGGATGGAGCAGGAGG
GGCGTGAGGACGATAAGCGCAAAAAAGCCCTTGCCCGCGAGTTGGAATGG
ATGCGTATGTCCCCCAAGGCGCGTCAGACCAAGGCCAAGGCACGTATCAC
GAGCTATGAGCAGATGGTGCAAGCCGACGAGGATGCGCGGCAGAACGCTC
GTGGCGGGCCCACCAACATTTACATCCCTCCCGGCCCTCCCTTGGCGCAG
AAAGTCGTCGAAGCGGAAGGTCTCGGCAAGTGGTACGGCGACCGCTTGCT
CTGGGACAAAGTATCGTTCTCGCTGCCCCGCGGTGGGGTGGTGGGCGTGA
TAGGCGCCAATGGCGTGGGAAAGTCGACGCTGTTCAAGCTCATTGCCGGG
TTGGAAAAGCCAGACCAAGGAACGCTCACCATCAGCGACAAGGTCAAGGT
TATGTACGTTGATCAGAACCGTGAGGGGGTGTCGGATCCGAACAAAACCG
TGTTCGATACCATCGCGGAGGGTGCAGAGGAGATCGAGCTGGGAAATAGG
GTGGTGAATGCTCGTCAGTATGCAGGCTGGTTCAACTTCAAGGGGGCCGA
CCAGCAGAAGCCCGTGGGGGTGTTGTCTGGGGGAGAGAGGAATAGATTGT
GCTTGGCACAGACCCTTAAGCAAGGAGGCAACCTGTTGTTGCTCGATGAG
CCTACAAATGACTTGGACAATGACACCTTACGTGCACTGGAGGATGCGAT
TGAGAACTACGCAGGGTGCGCCGTCATCATTTCTCACGACCGCTACTTCT
TAGATCGGGTCGCTACACATATTTTGGCCTTCGAGGACGACGGAAATGTC
ACGTGGTTTGAGGGCGATTTTAGCGAGTACCAGAGGGACTTGATGGCGCG
AAATGGAGGGGTGGAGCCCAAGAGGCCTAAGTTCAGGCCTTTGCCCACAG
TTTAAAGTGCCCACAGTTTAAGGCTGTGAGATCGGTGAGAGAGGGCGAGG
GAGTGAGGAATGAGTGGATGGAGGATATTTGATATAAAGGTGAGGATTAA
ATCGACGAATACGGGATATAGAGAATGTAGAAGTGAATTAATGCTTAATA
CAAAATTTAGGCACTTTTCAGT
back to top

protein sequence of NO07G00970.1

>NO07G00970.1-protein ID=NO07G00970.1-protein|Name=NO07G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=662bp
MRLTSLILGLLASGASAFFLAPTPFHHHSSHSTGVENGAVAITRTRINPL
SMGPLNAANLKKQQKGGKKAGKGGAGKSKGGGGSGGGGNGNSVIDTNKRE
YIYQMHRMSKTFGKGDGSKPVLKDISLSFYPGVKIGVLGGNGAGKSTLIK
IMAGLDENFNGEARPARWAKVGYLPQEPQLEGPTVADELERAVVETRGLL
KEYAGVSGSLGKADLTPEEQEKLSTRMDELQSAIEAKNGWELDRTLERAM
DALRCPPSDALVDQLSGGERRRVALCHLLLQRPDLLLLDEPTNHLDCESV
AWLEDFLRTYTGTVVAITHDRYFLDNVAGWILELDRGEGIPFEGNYSGWL
ERKAKRMEQEGREDDKRKKALARELEWMRMSPKARQTKAKARITSYEQMV
QADEDARQNARGGPTNIYIPPGPPLAQKVVEAEGLGKWYGDRLLWDKVSF
SLPRGGVVGVIGANGVGKSTLFKLIAGLEKPDQGTLTISDKVKVMYVDQN
REGVSDPNKTVFDTIAEGAEEIELGNRVVNARQYAGWFNFKGADQQKPVG
VLSGGERNRLCLAQTLKQGGNLLLLDEPTNDLDNDTLRALEDAIENYAGC
AVIISHDRYFLDRVATHILAFEDDGNVTWFEGDFSEYQRDLMARNGGVEP
KRPKFRPLPTV*
back to top

mRNA from alignment at chr7:314008..316435+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00970.1 ID=NO07G00970.1|Name=NO07G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2428bp|location=Sequence derived from alignment at chr7:314008..316435+ (Nannochloropsis oceanica)
CAACAGGATTTTGAGCAGTATGCGGTTGACGAGTCTGATCCTGGGGCTGC
TAGCCTCGGGCGCGAGTGCTTTCTTCCTTGCCCCGACGCCTTTCCATCAT
CACTCCTCGCATTCAACCGGGGTCGAGAATGGGGCAGTGGCCATTACTAG
GGTACGTTTGGGCGCCATGTGCCGTATGCATTTCTGTGTGTAAATTGTGC
GTTTGCCTGTCGGGTCAAGACATGTTTTCGGGTGAGGGGTTTCAATCTCA
GTAGCTGTTGCTGCTGCTGCTGCTGCTGCATTTTTTACCATGTTATTTCA
TAACATTACCACCATACCTCCTGCATTTTGGGCTTGTACTGGTAATTGGT
AATCATTTCCTATCATCACTCACCTTATCTCTCTCCCGAATTTCTACCAA
ATCCTAGACTCGCATCAATCCCCTCTCCATGGGGCCCTTAAACGCAGCCA
ACCTCAAGAAGCAGCAAAAAGGAGGCAAGAAAGCTGGCAAGGGCGGCGCA
GGCAAAAGCAAAGGTGGTGGCGGCAGCGGCGGCGGTGGAAATGGTAACAG
CGTGATCGACACGAACAAGCGCGAGTACATTTATCAAATGCATCGCATGA
GCAAAACCTTTGGAAAAGGCGACGGGTCCAAGCCGGTGCTAAAGGATATT
TCACTCTCCTTCTACCCGGGCGTGAAAATCGGTGTGTTGGGTGGGAATGG
CGCAGGAAAGTCTACCCTTATCAAAATCATGGCTGGGTTGGACGAGAATT
TCAACGGCGAGGCCCGGCCGGCGCGCTGGGCCAAGGTAGGGTACCTCCCT
CAGGAACCGCAGCTTGAAGGGCCGACAGTGGCAGACGAGTTAGAAAGGGC
CGTAGTAGAAACACGGGGGCTATTGAAAGAATATGCCGGCGTGAGTGGTT
CGTTGGGCAAGGCCGATTTGACACCGGAGGAGCAAGAGAAGCTGAGCACT
CGCATGGACGAGTTGCAGAGTGCGATCGAGGCGAAGAACGGGTGGGAGTT
GGATAGGACGCTGGAGAGGGCGATGGATGCATTGCGGTGCCCACCATCCG
ATGCACTGGTCGATCAGTTGTCCGGAGGAGAGCGCCGCCGGGTAGCATTG
TGCCACCTCTTGCTGCAGCGCCCGGACTTGTTGCTCCTCGACGAGCCCAC
GAATCATTTAGACTGCGAATCTGTGGCGTGGCTCGAGGACTTTCTGCGAA
CGTATACCGGAACGGTGGTCGCCATCACGCATGACCGTTATTTCCTTGAC
AATGTTGCTGGTTGGATCCTTGAACTAGACCGGGGGGAGGGGATTCCCTT
TGAGGGCAACTACTCCGGCTGGCTCGAGCGCAAGGCCAAGCGGATGGAGC
AGGAGGGGCGTGAGGACGATAAGCGCAAAAAAGCCCTTGCCCGCGAGTTG
GAATGGATGCGTATGTCCCCCAAGGCGCGTCAGACCAAGGCCAAGGCACG
TATCACGAGCTATGAGCAGATGGTGCAAGCCGACGAGGATGCGCGGCAGA
ACGCTCGTGGCGGGCCCACCAACATTTACATCCCTCCCGGCCCTCCCTTG
GCGCAGAAAGTCGTCGAAGCGGAAGGTCTCGGCAAGTGGTACGGCGACCG
CTTGCTCTGGGACAAAGTATCGTTCTCGCTGCCCCGCGGTGGGGTGGTGG
GCGTGATAGGCGCCAATGGCGTGGGAAAGTCGACGCTGTTCAAGCTCATT
GCCGGGTTGGAAAAGCCAGACCAAGGAACGCTCACCATCAGCGACAAGGT
CAAGGTTATGTACGTTGATCAGAACCGTGAGGGGGTGTCGGATCCGAACA
AAACCGTGTTCGATACCATCGCGGAGGGTGCAGAGGAGATCGAGCTGGGA
AATAGGGTGGTGAATGCTCGTCAGTATGCAGGCTGGTTCAACTTCAAGGG
GGCCGACCAGCAGAAGCCCGTGGGGGTGTTGTCTGGGGGAGAGAGGAATA
GATTGTGCTTGGCACAGACCCTTAAGCAAGGAGGCAACCTGTTGTTGCTC
GATGAGCCTACAAATGACTTGGACAATGACACCTTACGTGCACTGGAGGA
TGCGATTGAGAACTACGCAGGGTGCGCCGTCATCATTTCTCACGACCGCT
ACTTCTTAGATCGGGTCGCTACACATATTTTGGCCTTCGAGGACGACGGA
AATGTCACGTGGTTTGAGGGCGATTTTAGCGAGTACCAGAGGGACTTGAT
GGCGCGAAATGGAGGGGTGGAGCCCAAGAGGCCTAAGTTCAGGCCTTTGC
CCACAGTTTAAAGTGCCCACAGTTTAAGGCTGTGAGATCGGTGAGAGAGG
GCGAGGGAGTGAGGAATGAGTGGATGGAGGATATTTGATATAAAGGTGAG
GATTAAATCGACGAATACGGGATATAGAGAATGTAGAAGTGAATTAATGC
TTAATACAAAATTTAGGCACTTTTCAGT
back to top

Coding sequence (CDS) from alignment at chr7:314008..316435+

>NO07G00970.1 ID=NO07G00970.1|Name=NO07G00970.1|organism=Nannochloropsis oceanica|type=CDS|length=1986bp|location=Sequence derived from alignment at chr7:314008..316435+ (Nannochloropsis oceanica)
ATGCGGTTGACGAGTCTGATCCTGGGGCTGCTAGCCTCGGGCGCGAGTGC
TTTCTTCCTTGCCCCGACGCCTTTCCATCATCACTCCTCGCATTCAACCG
GGGTCGAGAATGGGGCAGTGGCCATTACTAGGACTCGCATCAATCCCCTC
TCCATGGGGCCCTTAAACGCAGCCAACCTCAAGAAGCAGCAAAAAGGAGG
CAAGAAAGCTGGCAAGGGCGGCGCAGGCAAAAGCAAAGGTGGTGGCGGCA
GCGGCGGCGGTGGAAATGGTAACAGCGTGATCGACACGAACAAGCGCGAG
TACATTTATCAAATGCATCGCATGAGCAAAACCTTTGGAAAAGGCGACGG
GTCCAAGCCGGTGCTAAAGGATATTTCACTCTCCTTCTACCCGGGCGTGA
AAATCGGTGTGTTGGGTGGGAATGGCGCAGGAAAGTCTACCCTTATCAAA
ATCATGGCTGGGTTGGACGAGAATTTCAACGGCGAGGCCCGGCCGGCGCG
CTGGGCCAAGGTAGGGTACCTCCCTCAGGAACCGCAGCTTGAAGGGCCGA
CAGTGGCAGACGAGTTAGAAAGGGCCGTAGTAGAAACACGGGGGCTATTG
AAAGAATATGCCGGCGTGAGTGGTTCGTTGGGCAAGGCCGATTTGACACC
GGAGGAGCAAGAGAAGCTGAGCACTCGCATGGACGAGTTGCAGAGTGCGA
TCGAGGCGAAGAACGGGTGGGAGTTGGATAGGACGCTGGAGAGGGCGATG
GATGCATTGCGGTGCCCACCATCCGATGCACTGGTCGATCAGTTGTCCGG
AGGAGAGCGCCGCCGGGTAGCATTGTGCCACCTCTTGCTGCAGCGCCCGG
ACTTGTTGCTCCTCGACGAGCCCACGAATCATTTAGACTGCGAATCTGTG
GCGTGGCTCGAGGACTTTCTGCGAACGTATACCGGAACGGTGGTCGCCAT
CACGCATGACCGTTATTTCCTTGACAATGTTGCTGGTTGGATCCTTGAAC
TAGACCGGGGGGAGGGGATTCCCTTTGAGGGCAACTACTCCGGCTGGCTC
GAGCGCAAGGCCAAGCGGATGGAGCAGGAGGGGCGTGAGGACGATAAGCG
CAAAAAAGCCCTTGCCCGCGAGTTGGAATGGATGCGTATGTCCCCCAAGG
CGCGTCAGACCAAGGCCAAGGCACGTATCACGAGCTATGAGCAGATGGTG
CAAGCCGACGAGGATGCGCGGCAGAACGCTCGTGGCGGGCCCACCAACAT
TTACATCCCTCCCGGCCCTCCCTTGGCGCAGAAAGTCGTCGAAGCGGAAG
GTCTCGGCAAGTGGTACGGCGACCGCTTGCTCTGGGACAAAGTATCGTTC
TCGCTGCCCCGCGGTGGGGTGGTGGGCGTGATAGGCGCCAATGGCGTGGG
AAAGTCGACGCTGTTCAAGCTCATTGCCGGGTTGGAAAAGCCAGACCAAG
GAACGCTCACCATCAGCGACAAGGTCAAGGTTATGTACGTTGATCAGAAC
CGTGAGGGGGTGTCGGATCCGAACAAAACCGTGTTCGATACCATCGCGGA
GGGTGCAGAGGAGATCGAGCTGGGAAATAGGGTGGTGAATGCTCGTCAGT
ATGCAGGCTGGTTCAACTTCAAGGGGGCCGACCAGCAGAAGCCCGTGGGG
GTGTTGTCTGGGGGAGAGAGGAATAGATTGTGCTTGGCACAGACCCTTAA
GCAAGGAGGCAACCTGTTGTTGCTCGATGAGCCTACAAATGACTTGGACA
ATGACACCTTACGTGCACTGGAGGATGCGATTGAGAACTACGCAGGGTGC
GCCGTCATCATTTCTCACGACCGCTACTTCTTAGATCGGGTCGCTACACA
TATTTTGGCCTTCGAGGACGACGGAAATGTCACGTGGTTTGAGGGCGATT
TTAGCGAGTACCAGAGGGACTTGATGGCGCGAAATGGAGGGGTGGAGCCC
AAGAGGCCTAAGTTCAGGCCTTTGCCCACAGTTTAA
back to top
Synonyms
Publications