NO07G00920.1, NO07G00920.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G00920.1
Unique Name	NO07G00920.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2460
Alignment location	chr7:297001..299716 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:297001..299716 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G00920.1 vs.
Match: EWM27290.1 (protein of unknown function DUF933 [Nannochloropsis gaditana])

HSP 1 Score: 741.1 bits (1912), Expect = 1.800e-210
Identity = 363/402 (90.30%), Postives = 383/402 (95.27%), Query Frame = 0

Query:    1 MPPKAKEEKKDNVRFGRVRSNLKMGLVGLPNVGKSSLFNLLCNASAAASNFAFCTIDPNESRCVVPDQRFDYLCDLHKPGNKIPAYLHVTDIAGLIKGASEGAGLGNAFLSHIAAVDGIFHLIRAFENDEIMHVDDSVDPVRDLETITSELCMKDLDTIERAIENERKEQKRVKMTKEMEAYFALLDKIKTMLEANHPIRTGTWTAAEVESVNDRLKDLITTKPMIYVVNLSQQQFIKKRSKWLPLIQAWVDAHGGGTIIPMSVEFEQKLWDLREDKAATETFLADAEGAKSALPRMVKIGYKQLHLIYFFTAGDVEVRCWTVQEGALAPQAAGAIHTDFERGFIKAEVVSFDDYKAHNNGKASMVDVKAAGKYRIEGKAYVVQDGDIIHFQFNVTADKKKK 403
            MPPKAKEEKK  VRFGRVRSNLKMGLVGLPNVGKSSLFNLLCNASAAASNFAFCTIDPNESRCVVPDQRFDYLCDLHKP +KIPAYLHVTDIAGLIKGASEGAGLGNAFLSHIAAVDGIFHL+R FENDEIMHVDDSVDPVRDLETITSELCMKDLDTI+RAIENE+KE KR KMTKEMEAY ALL+KIK MLEAN P+RTGTWTAAEVESVN+RLK+LITTKPMIY+VNLS +QF+KKRS+ LPL+Q WVD HGGGTIIP SVEFEQK WDLRED AA ETF+ADAEGAKSALPRMVKIGYKQLHLIYFFTAG+ EVRCWT+QEG LAPQAAGAIHTDFERGFIKAEVVS++DYKA+NNGKASMVDVKAAGKYRIEGK+YVVQDGDIIHFQFNVTADKKKK
Sbjct:    1 MPPKAKEEKKAVVRFGRVRSNLKMGLVGLPNVGKSSLFNLLCNASAAASNFAFCTIDPNESRCVVPDQRFDYLCDLHKPASKIPAYLHVTDIAGLIKGASEGAGLGNAFLSHIAAVDGIFHLVRGFENDEIMHVDDSVDPVRDLETITSELCMKDLDTIDRAIENEKKEHKRTKMTKEMEAYMALLEKIKAMLEANQPVRTGTWTAAEVESVNERLKELITTKPMIYLVNLSMEQFVKKRSRCLPLVQKWVDEHGGGTIIPFSVEFEQKRWDLREDPAALETFMADAEGAKSALPRMVKIGYKQLHLIYFFTAGEQEVRCWTIQEGNLAPQAAGAIHTDFERGFIKAEVVSYEDYKAYNNGKASMVDVKAAGKYRIEGKSYVVQDGDIIHFQFNVTADKKKK 402

The following BLAST results are available for this feature:

BLAST of NO07G00920.1 vs.

BLAST of NO07G00920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27290.1	1.800e-210	90.30	protein of unknown function DUF933 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G00920	NO07G00920	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G00920.1	NO07G00920.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G00920.1.cds1	NO07G00920.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G00920.1.cds2	NO07G00920.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G00920.1.cds3	NO07G00920.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:297001..299716-
coding sequence from alignment at chr7:297001..299716-

mRNA sequence

>NO07G00920.1 ID=NO07G00920.1|Name=NO07G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2460bp
GGCCACTAACAACGGCAGAAACCATCGACCCTACACGCCTAGGGGTAAGC
ACAACTGCAAATGTTCACAGCCGACACTCAGCAGTATCATGATGGTGGTC
GTCCACAAGTGCTTTTCGTCGTCCACAAGTGCTTTTCTTAGCGTGGTCCC
GGGAATGACCTGGACGTCCTCGCTGTCAGGCTCGCCACCACCGCCGCATA
CACGGCCACTCTGAGCCACACAGACCCACAAGCAGTATGGCGACCAGCAC
ATTCACGACAGGAATGCCAAGCCTGCGTGAAACCTGTGCATGGGAGTGGA
TTCGGTGCCGTGGCACGAAATCTCTCAGCCTGGAGGTTTTTTTCAGCATC
TCGATCAACAGATACCACCATCAGCACTACCGGTGACCGCATTCATCGCC
TCCGACTCGTTCTGACTTTAATACCTTCTCCCTCCACAGAAACACGCAGC
AAATCAAATCCCTCCACGACTGAGCACGATGCCGCCCAAGGCCAAGGAAG
AGAAGAAGGACAACGTCCGTTTTGGCCGCGTCCGGAGCAACCTAAAAATG
GGGCTAGTGGGTCTACCCAACGTCGGCAAGTCCAGTCTGTTCAATCTGCT
CTGTAATGCCTCGGCGGCGGCCAGCAATTTCGCTTTCTGTACCATCGACC
CCAACGAATCCCGCTGCGTCGTGCCTGACCAGCGCTTTGACTATCTCTGC
GATTTACACAAGCCTGGGAATAAGATTCCTGCTTATTTGCACGTGACGGA
CATCGCGGGTCTGATTAAGGGTGCCAGTGAAGGGGCGGGGTTGGGGAATG
CTTTCCTCTCTCACATCGCCGCCGTCGACGGGATCTTCCACCTGATCCGT
GCCTTCGAGAACGATGAGATTATGCATGTGGATGACTCGGTGGACCCTGT
CCGTGATCTGGAGACAATCACGAGCGAGCTGTGCATGAAAGACTTGGACA
CAATCGAGCGAGCGATCGAGAATGAGAGGAAGGAGCAAAAGCGCGTCAAG
ATGACCAAGGAAATGGAAGCTTACTTCGCCCTTCTAGACAAAATTAAGAC
CATGCTCGAGGCCAACCACCCCATCCGCACCGGCACCTGGACGGCGGCCG
AGGTTGAAAGTGTGAACGATCGATTAAAGGATCTGATAACGACCAAGCCG
ATGATTTATGTGGTCAATTTGAGTCAGCAGCAATTCATCAAGAAGCGTAG
CAAGTGGCTTCCTCTGATTCAGGCATGGGTGGACGCGCATGGTGGAGGGA
CGATCATTCCCATGTCTGTGGAGTTCGAGCAAAAATTGTGGGATTTGAGG
GAGGACAAGGCGGCGACTGAGACTTTCCTGGCTGATGCCGAGGGGGCAAA
GAGTGCCTTGCCACGTATGGTTAAAATTGGGTATAAGCAGTTGCACCTTA
TTTATTTCTTCACGGCGGGGGACGTGGAGGTGCGTTGTTGGACGGTGCAA
GAGGGCGCCCTGGCTCCCCAAGCTGCAGGGGCAATTCACACGGATTTCGA
ACGAGGTTTTATCAAGGCGGAAGTGGTGTCGTTTGATGATTATAAGGCTC
ACAACAATGGGAAGGCGAGTATGGTGGATGTGAAGGCGGCAGGGAAGTAT
CGGATTGAAGGAAAGGCGTATGTGGTCCAAGATGGGGATATAATTCATTT
TCAATTTAATGTAACGGCAGACAAGAAGAAAAAGTAAGGGGCAAGTTTGG
GGTAGGGAAGGAAGGGAGGTGAGAGATGGCGCGGATGGATCATGTGGGAG
GTTTGAGAGTGATTCGAAGATATGCATAGGCAAGGGAAGAGTTGAAAAAA
TGAAGAACAATTACAATAGTAGAAAGTTGCGAAACAATCCCCCTTGGTGC
AATATCCTGCCTTGGTCTCCATTTAGATGTATTGGCATGCGCGAGTGAGC
GCGATTATTAACACCTTGGCAACGCAAAGCCAGGAATTGGATGTCAAAAC
GGTTCAAAGAAAATCGACCCATCTGGCGGCGTGCGTTCATATCTCGCCCA
TAGCCCTCTACAAGCACGATTAAGATTTATCTTCAGTTCTTTCGCTTCTC
CTTGCTCGTTTTTTGTGTTTGGGGTTTCACTATCTACAATATGCCCAGGG
CTACGTCTTGTGTATATACCACCGTCTCGCACGGCCTCCTCTCCCTTCCT
TTTCATAGGGTCATCTCCAGCCCATCGAGTCATCCCCGTAACTGTCTATC
CCTCAGTCTAATGCCCTCTTCCCCTTCGCCTCCCAAACACACACCTTAAC
CACGCCCTTGGTCTCTTTGCCCCCACTCCTACTCTCACAATCACCGCCCA
CCTCCGCAAACGTACTTCGCACCGCCTCCGCTTTGGCCAGCCGCTTATCC
AGGTAAAGTCGACGCAAAGCTACAGGCGGGCCTCTATCAGGCGTCGGTCC
ATCGAACTCCATCATCCTTGCCATCCCCCTGCTCCTTCCCTCCCTCCTTC
CCTCCCTCCC

protein sequence of NO07G00920.1

>NO07G00920.1-protein ID=NO07G00920.1-protein|Name=NO07G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MPPKAKEEKKDNVRFGRVRSNLKMGLVGLPNVGKSSLFNLLCNASAAASN
FAFCTIDPNESRCVVPDQRFDYLCDLHKPGNKIPAYLHVTDIAGLIKGAS
EGAGLGNAFLSHIAAVDGIFHLIRAFENDEIMHVDDSVDPVRDLETITSE
LCMKDLDTIERAIENERKEQKRVKMTKEMEAYFALLDKIKTMLEANHPIR
TGTWTAAEVESVNDRLKDLITTKPMIYVVNLSQQQFIKKRSKWLPLIQAW
VDAHGGGTIIPMSVEFEQKLWDLREDKAATETFLADAEGAKSALPRMVKI
GYKQLHLIYFFTAGDVEVRCWTVQEGALAPQAAGAIHTDFERGFIKAEVV
SFDDYKAHNNGKASMVDVKAAGKYRIEGKAYVVQDGDIIHFQFNVTADKK
KK*

mRNA from alignment at chr7:297001..299716-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G00920.1 ID=NO07G00920.1|Name=NO07G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2716bp|location=Sequence derived from alignment at chr7:297001..299716- (Nannochloropsis oceanica)
GGCCACTAACAACGGCAGAAACCATCGACCCTACACGCCTAGGGGTAAGC
ACAACTGCAAATGTTCACAGCCGACACTCAGCAGTATCATGATGGTGGTC
GTCCACAAGTGCTTTTCGTCGTCCACAAGTGCTTTTCTTAGCGTGGTCCC
GGGAATGACCTGGACGTCCTCGCTGTCAGGCTCGCCACCACCGCCGCATA
CACGGCCACTCTGAGCCACACAGACCCACAAGCAGTATGGCGACCAGCAC
ATTCACGACAGGAATGCCAAGCCTGCGTGAAACCTGTGCATGGGAGTGGA
TTCGGTGCCGTGGCACGAAATCTCTCAGCCTGGAGGTTTTTTTCAGCATC
TCGATCAACAGATACCACCATCAGCACTACCGGTGACCGCATTCATCGCC
TCCGACTCGTTCTGACTTTAATACCTTCTCCCTCCACAGAAACACGCAGC
AAATCAAATCCCTCCACGACTGAGCACGATGCCGCCCAAGGCCAAGGAAG
AGAAGAAGGACAACGTCCGTTTTGGCCGCGTCCGGAGCAACCTAAAAATG
GGGCTAGTGGGTCTACCCAACGTCGGCAAGTCCAGTCTGTTCAATCTGCT
CTGTAATGCCTCGGCGGCGGCCAGCAATTTCGCTTTCTGGTAAGTGCTAC
AGGGTTGTGTGTATGGCATCTTTGCGAAGGCAGCAAAACATTGCGTGACG
CGCCTACCAACTCTTCCTTAATTCCCAAACTCACGTCCTACCTATCCACC
CTTCCCGTTAGTACCATCGACCCCAACGAATCCCGCTGCGTCGTGCCTGA
CCAGCGCTTTGACTATCTCTGCGATTTACACAAGCCTGGGAATAAGATTC
CTGCTTATTTGCACGTGACGGACATCGCGGGTCTGATTAAGGGTGCCAGT
GAAGGGGCGGGGTTGGGGAATGCTTTCCTCTCTCACATCGCCGCCGTCGA
CGGGATCTTCCACCTGATCCGTGCCTTCGAGAACGATGAGATTATGCATG
TGGATGACTCGGTGGACCCTGTCCGTGATCTGGAGACAATCACGAGCGAG
CTGTGCATGAAAGACTTGGACACAATCGAGCGAGCGATCGAGAATGAGAG
GAAGGAGCAAAAGCGCGTCAAGGTAAACAGATATATACAAGAGAAAAGAT
GCCTCTTGCACATATTTTCCGTCCCCCGCCGGCATCGCACACAATTATCG
ATACTAACCTCTCGTTCTGTGACTATGACATCTTCTCTTCTTCTTCTTCC
TCTTAGATGACCAAGGAAATGGAAGCTTACTTCGCCCTTCTAGACAAAAT
TAAGACCATGCTCGAGGCCAACCACCCCATCCGCACCGGCACCTGGACGG
CGGCCGAGGTTGAAAGTGTGAACGATCGATTAAAGGATCTGATAACGACC
AAGCCGATGATTTATGTGGTCAATTTGAGTCAGCAGCAATTCATCAAGAA
GCGTAGCAAGTGGCTTCCTCTGATTCAGGCATGGGTGGACGCGCATGGTG
GAGGGACGATCATTCCCATGTCTGTGGAGTTCGAGCAAAAATTGTGGGAT
TTGAGGGAGGACAAGGCGGCGACTGAGACTTTCCTGGCTGATGCCGAGGG
GGCAAAGAGTGCCTTGCCACGTATGGTTAAAATTGGGTATAAGCAGTTGC
ACCTTATTTATTTCTTCACGGCGGGGGACGTGGAGGTGCGTTGTTGGACG
GTGCAAGAGGGCGCCCTGGCTCCCCAAGCTGCAGGGGCAATTCACACGGA
TTTCGAACGAGGTTTTATCAAGGCGGAAGTGGTGTCGTTTGATGATTATA
AGGCTCACAACAATGGGAAGGCGAGTATGGTGGATGTGAAGGCGGCAGGG
AAGTATCGGATTGAAGGAAAGGCGTATGTGGTCCAAGATGGGGATATAAT
TCATTTTCAATTTAATGTAACGGCAGACAAGAAGAAAAAGTAAGGGGCAA
GTTTGGGGTAGGGAAGGAAGGGAGGTGAGAGATGGCGCGGATGGATCATG
TGGGAGGTTTGAGAGTGATTCGAAGATATGCATAGGCAAGGGAAGAGTTG
AAAAAATGAAGAACAATTACAATAGTAGAAAGTTGCGAAACAATCCCCCT
TGGTGCAATATCCTGCCTTGGTCTCCATTTAGATGTATTGGCATGCGCGA
GTGAGCGCGATTATTAACACCTTGGCAACGCAAAGCCAGGAATTGGATGT
CAAAACGGTTCAAAGAAAATCGACCCATCTGGCGGCGTGCGTTCATATCT
CGCCCATAGCCCTCTACAAGCACGATTAAGATTTATCTTCAGTTCTTTCG
CTTCTCCTTGCTCGTTTTTTGTGTTTGGGGTTTCACTATCTACAATATGC
CCAGGGCTACGTCTTGTGTATATACCACCGTCTCGCACGGCCTCCTCTCC
CTTCCTTTTCATAGGGTCATCTCCAGCCCATCGAGTCATCCCCGTAACTG
TCTATCCCTCAGTCTAATGCCCTCTTCCCCTTCGCCTCCCAAACACACAC
CTTAACCACGCCCTTGGTCTCTTTGCCCCCACTCCTACTCTCACAATCAC
CGCCCACCTCCGCAAACGTACTTCGCACCGCCTCCGCTTTGGCCAGCCGC
TTATCCAGGTAAAGTCGACGCAAAGCTACAGGCGGGCCTCTATCAGGCGT
CGGTCCATCGAACTCCATCATCCTTGCCATCCCCCTGCTCCTTCCCTCCC
TCCTTCCCTCCCTCCC

Coding sequence (CDS) from alignment at chr7:297001..299716-

>NO07G00920.1 ID=NO07G00920.1|Name=NO07G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr7:297001..299716- (Nannochloropsis oceanica)
ATGCCGCCCAAGGCCAAGGAAGAGAAGAAGGACAACGTCCGTTTTGGCCG
CGTCCGGAGCAACCTAAAAATGGGGCTAGTGGGTCTACCCAACGTCGGCA
AGTCCAGTCTGTTCAATCTGCTCTGTAATGCCTCGGCGGCGGCCAGCAAT
TTCGCTTTCTGTACCATCGACCCCAACGAATCCCGCTGCGTCGTGCCTGA
CCAGCGCTTTGACTATCTCTGCGATTTACACAAGCCTGGGAATAAGATTC
CTGCTTATTTGCACGTGACGGACATCGCGGGTCTGATTAAGGGTGCCAGT
GAAGGGGCGGGGTTGGGGAATGCTTTCCTCTCTCACATCGCCGCCGTCGA
CGGGATCTTCCACCTGATCCGTGCCTTCGAGAACGATGAGATTATGCATG
TGGATGACTCGGTGGACCCTGTCCGTGATCTGGAGACAATCACGAGCGAG
CTGTGCATGAAAGACTTGGACACAATCGAGCGAGCGATCGAGAATGAGAG
GAAGGAGCAAAAGCGCGTCAAGATGACCAAGGAAATGGAAGCTTACTTCG
CCCTTCTAGACAAAATTAAGACCATGCTCGAGGCCAACCACCCCATCCGC
ACCGGCACCTGGACGGCGGCCGAGGTTGAAAGTGTGAACGATCGATTAAA
GGATCTGATAACGACCAAGCCGATGATTTATGTGGTCAATTTGAGTCAGC
AGCAATTCATCAAGAAGCGTAGCAAGTGGCTTCCTCTGATTCAGGCATGG
GTGGACGCGCATGGTGGAGGGACGATCATTCCCATGTCTGTGGAGTTCGA
GCAAAAATTGTGGGATTTGAGGGAGGACAAGGCGGCGACTGAGACTTTCC
TGGCTGATGCCGAGGGGGCAAAGAGTGCCTTGCCACGTATGGTTAAAATT
GGGTATAAGCAGTTGCACCTTATTTATTTCTTCACGGCGGGGGACGTGGA
GGTGCGTTGTTGGACGGTGCAAGAGGGCGCCCTGGCTCCCCAAGCTGCAG
GGGCAATTCACACGGATTTCGAACGAGGTTTTATCAAGGCGGAAGTGGTG
TCGTTTGATGATTATAAGGCTCACAACAATGGGAAGGCGAGTATGGTGGA
TGTGAAGGCGGCAGGGAAGTATCGGATTGAAGGAAAGGCGTATGTGGTCC
AAGATGGGGATATAATTCATTTTCAATTTAATGTAACGGCAGACAAGAAG
AAAAAGTAA

Synonyms

Publications