NO07G00870.1, NO07G00870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00870.1
Unique NameNO07G00870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1409
Alignment locationchr7:286936..288905 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:286936..288905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00870.1 vs.
Match: EWM27282.1 (dna replication factor c subunit [Nannochloropsis gaditana])

HSP 1 Score: 392.5 bits (1007), Expect = 1.700e-105
Identity = 206/258 (79.84%), Postives = 222/258 (86.05%), Query Frame = 0 
Query:   61 MFGASSSGQTSKGLAAARAHQHKVQPWVEKYRPQGVDDIAHQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPEYRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLPREVMQTQLLSIGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYGQSTTITPDAIREMSGGVP 319
            MFG + SGQ  K +A A+A Q KVQPWVEKYRPQGVDDI++QDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPEYRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPL REVM+ +L +IG +EGASV+++MM+AILTVADG     V T   +  F        P +   +SGG P
Sbjct:    1 MFG-TGSGQGGKDVAVAKAQQTKVQPWVEKYRPQGVDDISYQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPEYRSRILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEADTMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLSREVMEARLRAIGAAEGASVTQEMMDAILTVADG----CVLTFFPSPSF----PPCLPPSPSSLSGGFP 249
The following BLAST results are available for this feature:
BLAST of NO07G00870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27282.11.700e-10579.84dna replication factor c subunit [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00870NO07G00870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00870.1NO07G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00870.1.cds1NO07G00870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00870.1.cds2NO07G00870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00870.1.cds3NO07G00870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00870.1.cds4NO07G00870.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00870.1 ID=NO07G00870.1|Name=NO07G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp
CTTTTCTGTCGCTCAAAACCAAGGCCTTCTTCACCCTAACTAATACTATG
CAATGCGACTCATTTGCACAAATGCTACGAATGGACACCAGAAAGTGAAA
CTGCAGATCCAGCATGTCGGGAAGCGTCGCAGGGTTACAGGAGAAGATGG
CGGTACTGGTGCACAAGAAGAGTTCCATAACAACGCATTTTTCTCAATCC
TCTCTACTCCCTACGCATTACACAGCCACACCATGTTTGGGGCAAGCAGC
AGTGGGCAGACTAGCAAGGGTCTCGCGGCTGCTCGGGCACATCAACACAA
GGTTCAACCTTGGGTGGAGAAGTACCGTCCCCAGGGCGTCGATGACATTG
CCCACCAAGACGAAGTGGTGAAAACCCTCAAAAACGCCATCCAAACAGGC
ACGTTGCCGCATCTCCTCTTTTATGGCCCTCCAGGAACAGGCAAGACATC
GACTATTCTGGCCGTGGCTCGCTCCTTGTTCGGCCCCGAGTACCGCTCGC
GGATTCTGGAATTGAATGCGTCGGACGAACGAGGGATTAAGGTGGTTAGG
GAGAAGGTGAAACAATTTGCCCAATTTACCGTGACGGGTTTGGAGAAGAC
GGCGGGCTACCCGTGCCCCCCCTTCAAGATTATTATTCTGGACGAGGCAG
ACACGATGACCACGGAGGCTCAGGCAGCTCTAAGGCGGACGATGGAGACG
TATTCCAAAATCACCCGCTTCTGCCTCGTGTGCAACTACGTCACGCGCAT
CATCGAACCTCTCGCCTCCCGTTGTGCCAAATTTCGTTTCCGTCCCTTGC
CGCGCGAGGTGATGCAGACACAACTCCTCTCCATCGGGACATCAGAGGGC
GCCTCCGTATCCGAGCAGATGATGGAAGCTATCTTGACAGTGGCGGACGG
GGACATGCGTAAGGCCGTGACCACACTACAAAGCGCTCACCAGTTTTATG
GCCAAAGTACCACCATTACACCCGATGCCATTCGAGAGATGAGTGGGGGA
GTGCCTGATGCCGTCGTATTTGGGCTGTGGGAGGCGATTCGTATGCAGGC
CTTTGATAATTTGAAGGCTCAGTGCGAGGAGGTGGATATGGGAGGGTTTC
CTACCATGGCGGTCTTGGGGCGATTGTTTGACCTCGTGGTGGAGGATGAG
GAGGAGGGAGGGAGTGAGGGGGTGAAGGACAGCGAGAAGGCGGTAGTGGC
GGCGGGGATAGCACGGGCAGAGAAGATGATAATCGATGGAGCTAGTGAGA
GCTTGCAGTTGCTGGATGTGTGTGCCCTGATGATGAGGACATTTGGGGGC
AGGAATGGAAGGAGAGAGGGGGGATTGAAATACGGGGGTGCGGACGAGAC
GGGCGCAGAGGCGGGGACGCCGATGGTGTTGTAAGGAGGAGGGGGGGGGA
AGAGATGGA
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protein sequence of NO07G00870.1

>NO07G00870.1-protein ID=NO07G00870.1-protein|Name=NO07G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MRLICTNATNGHQKVKLQIQHVGKRRRVTGEDGGTGAQEEFHNNAFFSIL
STPYALHSHTMFGASSSGQTSKGLAAARAHQHKVQPWVEKYRPQGVDDIA
HQDEVVKTLKNAIQTGTLPHLLFYGPPGTGKTSTILAVARSLFGPEYRSR
ILELNASDERGIKVVREKVKQFAQFTVTGLEKTAGYPCPPFKIIILDEAD
TMTTEAQAALRRTMETYSKITRFCLVCNYVTRIIEPLASRCAKFRFRPLP
REVMQTQLLSIGTSEGASVSEQMMEAILTVADGDMRKAVTTLQSAHQFYG
QSTTITPDAIREMSGGVPDAVVFGLWEAIRMQAFDNLKAQCEEVDMGGFP
TMAVLGRLFDLVVEDEEEGGSEGVKDSEKAVVAAGIARAEKMIIDGASES
LQLLDVCALMMRTFGGRNGRREGGLKYGGADETGAEAGTPMVL*
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mRNA from alignment at chr7:286936..288905+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00870.1 ID=NO07G00870.1|Name=NO07G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1970bp|location=Sequence derived from alignment at chr7:286936..288905+ (Nannochloropsis oceanica)
CTTTTCTGTCGCTCAAAACCAAGGCCTTCTTCACCCTAACTAATACTATG
CAATGCGACTCATTTGCACAAATGCTACGAATGGACACCAGAAAGTGAAA
CTGCAGATCCAGCATGTCGGGAAGCGTCGCAGGGTTACAGGAGAAGATGG
CGGTACTGGTGCACAAGAAGAGTTCCATAACAACGCATTTTTCTCAATCC
TCTCTACTCCCTACGCATTACACAGCCACACCATGTTTGGGGCAAGCAGC
AGTGGGCAGACTAGCAAGGGTCTCGCGGCTGCTCGGGCACATCAACACAA
GGCAAGTAACATGAGCGCCTACAGCCCACCTTTCCTCCCTCCTGTCCCCC
CCATCAATACCACATTTTCTACAGCGATTCTCCATGTGCTGCGTTGTCCA
TGTGCCTGCGATGCCAAGCAATTTTTCTCCCATTGCATCTTTTATGTCAT
GCTCTGGACCGCTGATCTGATGTGCTTAAGTATCTTGCGCTGACTATTAT
ATCCCTTCTCTACCTCCTTTCCTTCACAGGTTCAACCTTGGGTGGAGAAG
TACCGTCCCCAGGGCGTCGATGACATTGCCCACCAAGACGAAGTGGTGAA
AACCCTCAAAAACGCCATCCAAACAGGCACGTTGCCGCATCTCCTCTTTT
ATGGCCCTCCAGGAACAGGCAAGACATCGACTATTCTGGCCGTGGCTCGC
TCCTTGTTCGGCCCCGAGTACCGCTCGCGGATTCTGGAATTGAATGCGTC
GGACGAACGAGGGATTAAGGTGGTTAGGGAGAAGGTGAAACAATTTGCCC
AATTTACCGTGACGGGTTTGGAGAAGACGGCGGGCTACCCGTGCCCCCCC
TTCAAGATTATTATTCTGGACGAGGCAGACACGATGACCACGGAGGCTCA
GGCAGCTCTAAGGCGGACGATGGAGGTGAGATGGGGAGGTTAAAAGAGAG
AATGGAGGGGAGGAACACAGATAAGATGCATCTAGGAATGTCATATGGCT
GGCTTGAGTCCCTGACTGACTCCTGTTTCCTCTGCCTCCTTCCCTCCCTC
CCCCCCTTCTTCCTCCATCTCCTCAGACGTATTCCAAAATCACCCGCTTC
TGCCTCGTGTGCAACTACGTCACGCGCATCATCGAACCTCTCGCCTCCCG
TTGTGCCAAATTTCGTTTCCGTCCCTTGCCGCGCGAGGTGATGCAGACAC
AACTCCTCTCCATCGGGACATCAGAGGGCGCCTCCGTATCCGAGCAGATG
ATGGAAGCTATCTTGACAGTGGCGGACGGGTGCGTGCTACCCTTCCTTCT
TCCCTTCCCTCCGTCCCTCCCTCCCACCTTCTTCGTGCTTCCCCTCATTC
CCACCTTCTTGGTCACATGAATAAGAGGCAGCACGTCCAAGTTAATCTTC
CTTCATTCTTAGACTCTCTCCCTCCCTCCCCCCCTCCCCTCCGTCACCCC
CACGCCCACAGGGACATGCGTAAGGCCGTGACCACACTACAAAGCGCTCA
CCAGTTTTATGGCCAAAGTACCACCATTACACCCGATGCCATTCGAGAGA
TGAGTGGGGGAGTGCCTGATGCCGTCGTATTTGGGCTGTGGGAGGCGATT
CGTATGCAGGCCTTTGATAATTTGAAGGCTCAGTGCGAGGAGGTGGATAT
GGGAGGGTTTCCTACCATGGCGGTCTTGGGGCGATTGTTTGACCTCGTGG
TGGAGGATGAGGAGGAGGGAGGGAGTGAGGGGGTGAAGGACAGCGAGAAG
GCGGTAGTGGCGGCGGGGATAGCACGGGCAGAGAAGATGATAATCGATGG
AGCTAGTGAGAGCTTGCAGTTGCTGGATGTGTGTGCCCTGATGATGAGGA
CATTTGGGGGCAGGAATGGAAGGAGAGAGGGGGGATTGAAATACGGGGGT
GCGGACGAGACGGGCGCAGAGGCGGGGACGCCGATGGTGTTGTAAGGAGG
AGGGGGGGGGAAGAGATGGA
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Coding sequence (CDS) from alignment at chr7:286936..288905+

>NO07G00870.1 ID=NO07G00870.1|Name=NO07G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr7:286936..288905+ (Nannochloropsis oceanica)
ATGCGACTCATTTGCACAAATGCTACGAATGGACACCAGAAAGTGAAACT
GCAGATCCAGCATGTCGGGAAGCGTCGCAGGGTTACAGGAGAAGATGGCG
GTACTGGTGCACAAGAAGAGTTCCATAACAACGCATTTTTCTCAATCCTC
TCTACTCCCTACGCATTACACAGCCACACCATGTTTGGGGCAAGCAGCAG
TGGGCAGACTAGCAAGGGTCTCGCGGCTGCTCGGGCACATCAACACAAGG
TTCAACCTTGGGTGGAGAAGTACCGTCCCCAGGGCGTCGATGACATTGCC
CACCAAGACGAAGTGGTGAAAACCCTCAAAAACGCCATCCAAACAGGCAC
GTTGCCGCATCTCCTCTTTTATGGCCCTCCAGGAACAGGCAAGACATCGA
CTATTCTGGCCGTGGCTCGCTCCTTGTTCGGCCCCGAGTACCGCTCGCGG
ATTCTGGAATTGAATGCGTCGGACGAACGAGGGATTAAGGTGGTTAGGGA
GAAGGTGAAACAATTTGCCCAATTTACCGTGACGGGTTTGGAGAAGACGG
CGGGCTACCCGTGCCCCCCCTTCAAGATTATTATTCTGGACGAGGCAGAC
ACGATGACCACGGAGGCTCAGGCAGCTCTAAGGCGGACGATGGAGACGTA
TTCCAAAATCACCCGCTTCTGCCTCGTGTGCAACTACGTCACGCGCATCA
TCGAACCTCTCGCCTCCCGTTGTGCCAAATTTCGTTTCCGTCCCTTGCCG
CGCGAGGTGATGCAGACACAACTCCTCTCCATCGGGACATCAGAGGGCGC
CTCCGTATCCGAGCAGATGATGGAAGCTATCTTGACAGTGGCGGACGGGG
ACATGCGTAAGGCCGTGACCACACTACAAAGCGCTCACCAGTTTTATGGC
CAAAGTACCACCATTACACCCGATGCCATTCGAGAGATGAGTGGGGGAGT
GCCTGATGCCGTCGTATTTGGGCTGTGGGAGGCGATTCGTATGCAGGCCT
TTGATAATTTGAAGGCTCAGTGCGAGGAGGTGGATATGGGAGGGTTTCCT
ACCATGGCGGTCTTGGGGCGATTGTTTGACCTCGTGGTGGAGGATGAGGA
GGAGGGAGGGAGTGAGGGGGTGAAGGACAGCGAGAAGGCGGTAGTGGCGG
CGGGGATAGCACGGGCAGAGAAGATGATAATCGATGGAGCTAGTGAGAGC
TTGCAGTTGCTGGATGTGTGTGCCCTGATGATGAGGACATTTGGGGGCAG
GAATGGAAGGAGAGAGGGGGGATTGAAATACGGGGGTGCGGACGAGACGG
GCGCAGAGGCGGGGACGCCGATGGTGTTGTAA
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Synonyms
Publications