NO07G00830.1, NO07G00830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00830.1
Unique NameNO07G00830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1188
Alignment locationchr7:279250..280653 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:279250..280653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G00830.1 vs.
Match: XP_005855060.1 (dual specificity phosphatase, partial [Nannochloropsis gaditana CCMP526]; EKU21296.1 dual specificity phosphatase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 400.2 bits (1027), Expect = 7.400e-108
Identity = 243/405 (60.00%), Postives = 281/405 (69.38%), Query Frame = 0 
Query:    1 MGCSQSKS---ISP-----SSPRAQGQTSCDLTTTSSTTTAAQAATSACPIAASPSNTDVRQDSSVLLSVIPSTPSPR-TFPGDLTPRGGGEDDDCRSDEAPSPRLAAVTEGATILLSPRDAASPPSPLPQIATTSTVQIAHKKRTLPAPFNGKIWLASPSSAPLTLGSGPRRPATNPTPTSHHDVLLNVYSPLTHSQEIA-AMSSTTGGDGSGGGSGISARGGRRPRPLAISTDSHFHLSTILGHVLIGGDEVSDNLTVLRQLNVKSVVNATTEGKETLGDLCYIKLNWSDDINQPILPDLPRAFATIDLAKDEGGVCLVHCKKGMSRSGAVVVAYLMFHNPKMSLLDALTYARSRRAIVAPNLGFMAQLIEWEREHRGGRVTVDLAKYEENRFGDTAVLLCGA 396
            MGC QSKS   I P     S P+   +   +    SS  T    A S  P  A  ++   R+ +S  L    ST SPR + PGD                  SPRLAAV E A        A+  P P  +      V    KKRTLP PF+ K WLA P+ AP+   SGPRRPATNPTPTS+HDVLLN  + LT SQ I  A++ TTGG+     SGISARG RRPRPLAI TDSHFHLSTILGH+LIGGDEVSDNLTV+RQLN+KSVVN TTEG +++G+LCY+KLNW DDI QPILPDLPRAFA ID AK +GG+CLVHCKKGMSRSGAVVVAYLM+ N  MSLL+ALTYARSRRAI+APN+GFM QL+EWEREHRGG+V++DL+KYEENRFGDTA+LLCGA
Sbjct:   66 MGCVQSKSSLFIGPHADEDSLPKPGKERMMEGEAPSSAFTGN--AQSELPCQAENNSVHQREGNSRSLPTTWSTSSPRASTPGDCLL---------------SPRLAAVAEHAA-------ASVDPGPHKESHVHGKVV---KKRTLPVPFSAKGWLAFPAQAPIN--SGPRRPATNPTPTSNHDVLLN--ASLTQSQGIVVALTKTTGGE-----SGISARG-RRPRPLAIPTDSHFHLSTILGHLLIGGDEVSDNLTVMRQLNIKSVVNTTTEGDDSMGELCYLKLNWRDDIAQPILPDLPRAFAAIDAAKAQGGLCLVHCKKGMSRSGAVVVAYLMYSNKDMSLLEALTYARSRRAIIAPNMGFMGQLVEWEREHRGGKVSLDLSKYEENRFGDTAMLLCGA 433
The following BLAST results are available for this feature:
BLAST of NO07G00830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855060.17.400e-10860.00dual specificity phosphatase, partial [Nannochloro... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00830NO07G00830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00830.1NO07G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00830.1.cds1NO07G00830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00830.1.cds2NO07G00830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00830.1 ID=NO07G00830.1|Name=NO07G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp
ATGGGATGCTCCCAGAGCAAGTCTATCTCGCCATCGAGCCCGCGTGCGCA
AGGACAGACCTCATGTGACTTAACCACGACTTCCTCGACGACGACAGCTG
CTCAAGCAGCAACAAGCGCATGTCCAATTGCAGCTTCCCCTAGCAATACG
GACGTCCGACAAGATAGCTCTGTCCTTCTCTCAGTGATACCATCTACGCC
TTCTCCCCGTACCTTCCCAGGAGATTTAACTCCCCGCGGCGGCGGCGAGG
ACGACGATTGCCGTAGCGACGAAGCCCCTTCCCCTCGTCTTGCTGCCGTA
ACCGAAGGCGCTACTATCCTCCTTAGTCCACGCGATGCAGCATCTCCACC
ATCACCACTACCACAGATAGCGACCACGTCAACTGTCCAAATCGCTCACA
AAAAAAGGACGTTGCCCGCCCCCTTTAATGGCAAAATATGGCTCGCCTCT
CCATCTTCTGCTCCTCTTACACTTGGGTCCGGCCCGCGCCGCCCCGCGAC
CAATCCGACCCCTACTTCTCATCACGACGTACTTCTTAATGTCTATTCTC
CATTAACGCACTCTCAAGAGATTGCGGCGATGAGTAGCACGACTGGGGGT
GATGGTAGCGGGGGTGGAAGTGGCATATCCGCGAGGGGGGGAAGGAGGCC
GCGGCCGCTGGCGATCTCGACGGATTCTCATTTTCACCTGAGCACGATAT
TGGGACATGTTCTGATAGGCGGGGATGAAGTCAGTGACAACTTGACGGTG
TTGCGGCAGTTGAATGTGAAGAGTGTGGTGAATGCCACGACGGAGGGAAA
GGAGACGTTAGGGGATCTATGTTACATTAAGCTCAATTGGAGCGATGACA
TAAACCAGCCAATCCTTCCGGATCTTCCGCGTGCCTTTGCCACTATTGAT
CTCGCCAAGGACGAAGGGGGGGTTTGCCTCGTTCATTGCAAGAAAGGTAT
GAGTCGGTCAGGGGCCGTGGTTGTTGCTTATTTGATGTTTCACAACCCCA
AAATGTCTCTGTTGGACGCGCTGACGTATGCGAGGAGTCGGCGGGCGATT
GTTGCGCCTAACCTCGGGTTTATGGCCCAATTGATCGAATGGGAAAGGGA
GCACAGGGGAGGGAGGGTGACAGTTGATCTGGCCAAGTACGAGGAGAACA
GGTTCGGCGATACGGCGGTGTTGCTGTGTGGGGCATGA
back to top

protein sequence of NO07G00830.1

>NO07G00830.1-protein ID=NO07G00830.1-protein|Name=NO07G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MGCSQSKSISPSSPRAQGQTSCDLTTTSSTTTAAQAATSACPIAASPSNT
DVRQDSSVLLSVIPSTPSPRTFPGDLTPRGGGEDDDCRSDEAPSPRLAAV
TEGATILLSPRDAASPPSPLPQIATTSTVQIAHKKRTLPAPFNGKIWLAS
PSSAPLTLGSGPRRPATNPTPTSHHDVLLNVYSPLTHSQEIAAMSSTTGG
DGSGGGSGISARGGRRPRPLAISTDSHFHLSTILGHVLIGGDEVSDNLTV
LRQLNVKSVVNATTEGKETLGDLCYIKLNWSDDINQPILPDLPRAFATID
LAKDEGGVCLVHCKKGMSRSGAVVVAYLMFHNPKMSLLDALTYARSRRAI
VAPNLGFMAQLIEWEREHRGGRVTVDLAKYEENRFGDTAVLLCGA*
back to top

mRNA from alignment at chr7:279250..280653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00830.1 ID=NO07G00830.1|Name=NO07G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at chr7:279250..280653+ (Nannochloropsis oceanica)
ATGGGATGCTCCCAGAGCAAGTCTATCTCGCCATCGAGCCCGCGTGCGCA
AGGACAGACCTCATGTGACTTAACCACGACTTCCTCGACGACGACAGCTG
CTCAAGCAGCAACAAGCGCATGTCCAATTGCAGCTTCCCCTAGCAATACG
GACGTCCGACAAGATAGCTCTGTCCTTCTCTCAGTGATACCATCTACGCC
TTCTCCCCGTACCTTCCCAGGAGATTTAACTCCCCGCGGCGGCGGCGAGG
ACGACGATTGCCGTAGCGACGAAGCCCCTTCCCCTCGTCTTGCTGCCGTA
ACCGAAGGCGCTACTATCCTCCTTAGTCCACGCGATGCAGCATCTCCACC
ATCACCACTACCACAGATAGCGACCACGTCAACTGTCCAAATCGCTCACA
AAAAAAGGACGTTGCCCGCCCCCTTTAATGGCAAAATATGGCTCGCCTCT
CCATCTTCTGCTCCTCTTACACTTGGGTCCGGCCCGCGCCGCCCCGCGAC
CAATCCGACCCCTACTTCTCATCACGACGTACTTCTTAATGTCTATTCTC
CATTAACGCACTCTCAAGAGATTGCGGCGATGAGTAGCACGACTGGGGGT
GATGGTAGCGGGGGTGGAAGTGGCATATCCGCGAGGGGGGGAAGGAGGCC
GCGGCCGCTGGCGATCTCGACGGATTCTCATTTTCACCTGAGCACGATAT
TGGGACATGTTCTGATAGGCGGGGATGAAGTCAGTGACAACTTGACGGTG
TTGCGGCAGTTGAATGTGAAGAGTGTGGTGAATGCCACGACGGAGGGAAA
GGAGACGTTAGGGGGTACGTGTAGGGGGTGGGTGAATGTGATTGAGTCTG
TGGGTTGATCCGCTTGGCCGTGGGCCAGAGTGATTTGCGTGATTATTCCT
GCGAGTTTCCATTATGTATTTTGCCATCCTCCCTCCATGGGGTTTCCTCC
CTTGATTGACATATCACCTCTCCTCATCCCTGGTCTTGATCCCTCCCTTC
CTCCCCACCTCCCTCTCTCCCTCCTCATAGATCTATGTTACATTAAGCTC
AATTGGAGCGATGACATAAACCAGCCAATCCTTCCGGATCTTCCGCGTGC
CTTTGCCACTATTGATCTCGCCAAGGACGAAGGGGGGGTTTGCCTCGTTC
ATTGCAAGAAAGGTATGAGTCGGTCAGGGGCCGTGGTTGTTGCTTATTTG
ATGTTTCACAACCCCAAAATGTCTCTGTTGGACGCGCTGACGTATGCGAG
GAGTCGGCGGGCGATTGTTGCGCCTAACCTCGGGTTTATGGCCCAATTGA
TCGAATGGGAAAGGGAGCACAGGGGAGGGAGGGTGACAGTTGATCTGGCC
AAGTACGAGGAGAACAGGTTCGGCGATACGGCGGTGTTGCTGTGTGGGGC
ATGA
back to top

Coding sequence (CDS) from alignment at chr7:279250..280653+

>NO07G00830.1 ID=NO07G00830.1|Name=NO07G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr7:279250..280653+ (Nannochloropsis oceanica)
ATGGGATGCTCCCAGAGCAAGTCTATCTCGCCATCGAGCCCGCGTGCGCA
AGGACAGACCTCATGTGACTTAACCACGACTTCCTCGACGACGACAGCTG
CTCAAGCAGCAACAAGCGCATGTCCAATTGCAGCTTCCCCTAGCAATACG
GACGTCCGACAAGATAGCTCTGTCCTTCTCTCAGTGATACCATCTACGCC
TTCTCCCCGTACCTTCCCAGGAGATTTAACTCCCCGCGGCGGCGGCGAGG
ACGACGATTGCCGTAGCGACGAAGCCCCTTCCCCTCGTCTTGCTGCCGTA
ACCGAAGGCGCTACTATCCTCCTTAGTCCACGCGATGCAGCATCTCCACC
ATCACCACTACCACAGATAGCGACCACGTCAACTGTCCAAATCGCTCACA
AAAAAAGGACGTTGCCCGCCCCCTTTAATGGCAAAATATGGCTCGCCTCT
CCATCTTCTGCTCCTCTTACACTTGGGTCCGGCCCGCGCCGCCCCGCGAC
CAATCCGACCCCTACTTCTCATCACGACGTACTTCTTAATGTCTATTCTC
CATTAACGCACTCTCAAGAGATTGCGGCGATGAGTAGCACGACTGGGGGT
GATGGTAGCGGGGGTGGAAGTGGCATATCCGCGAGGGGGGGAAGGAGGCC
GCGGCCGCTGGCGATCTCGACGGATTCTCATTTTCACCTGAGCACGATAT
TGGGACATGTTCTGATAGGCGGGGATGAAGTCAGTGACAACTTGACGGTG
TTGCGGCAGTTGAATGTGAAGAGTGTGGTGAATGCCACGACGGAGGGAAA
GGAGACGTTAGGGGATCTATGTTACATTAAGCTCAATTGGAGCGATGACA
TAAACCAGCCAATCCTTCCGGATCTTCCGCGTGCCTTTGCCACTATTGAT
CTCGCCAAGGACGAAGGGGGGGTTTGCCTCGTTCATTGCAAGAAAGGTAT
GAGTCGGTCAGGGGCCGTGGTTGTTGCTTATTTGATGTTTCACAACCCCA
AAATGTCTCTGTTGGACGCGCTGACGTATGCGAGGAGTCGGCGGGCGATT
GTTGCGCCTAACCTCGGGTTTATGGCCCAATTGATCGAATGGGAAAGGGA
GCACAGGGGAGGGAGGGTGACAGTTGATCTGGCCAAGTACGAGGAGAACA
GGTTCGGCGATACGGCGGTGTTGCTGTGTGGGGCATGA
back to top
Synonyms
Publications