NO07G00700.1, NO07G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00700.1
Unique NameNO07G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1638
Alignment locationchr7:248972..250609 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:248972..250609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G00700.1 vs.
Match: EWM27323.1 (hypothetical protein Naga_100192g11 [Nannochloropsis gaditana])

HSP 1 Score: 414.8 bits (1065), Expect = 4.000e-112
Identity = 279/535 (52.15%), Postives = 349/535 (65.23%), Query Frame = 0 
Query:   27 QRLKTISPTPQPPSMHM-------EEEDEEEIVTFRIGGQHVPAATTANTTAAAATSSAFGKQHESIVGLSQQKRAPSPLAPAVFPPMPSAVTTMTAPSDPIEPSSSSADASRQQQPQTTVTRTSAVMAAAAAM-------VSPLKAAAGSLSPSKAT--KSSAGTAANTSNTLKKDDTDEDEEIDELKRRLSEGLSLKYDAGGEHCPQYSQKQVDLLLETRLEEVKNTLLASHLAAQASEKTKWEARVKASEEEATRWRVQCEIFEKELSAEVSSVEGAFAARLKETESDLMSKEIQLKAVTAQLADMQARTTAAEKAAEECRRRVEEAGQKEERLLRDVAEKLEREKARRVKDVIEMKERVAKRAQEQFAVAQQQFNSLEKALKEKEGEASHLAGEVERAQAEATEALRQKEKAVSQLAAIEADMASVRAAAGRKEEEMERQACVAEGKVVELKGALEKAHVEKALAIKDREQAYESLSRTAVSLQEHKRKAEEFEEKYVSLVPKAREHETMCEELLVMVEDLNQKLAGGGGK 546
            +R + ++PTPQ P           EEE+EEEIVTFRI GQHVPA+ T +T           K  + I      +R P     A   P  S+V   T  +       S + A + Q+    +    AVM A AA        + P    +G  +P   +  K   G +          D  ED+E+DEL  RLSEGLSLKYD GGEHCP+YSQ++VDLL+  R+EE K  L+A+   A   E   WEA++K +EE+  RW+ QC   E +LSAE+ SVEGAFAARLKET+ +++SKEIQL+AVTAQLADMQ R   AE+  EE R+++EEAG+KE RL+R++AEKLE EKARRVKDV++MK+RVA+RAQEQFAVAQ+ FN L   L+ KE E S   GE+ RAQ EA EALRQK+ AV++   +EA+ A++R  AGR EEE ERQA  AE K+ +L+ ALEK   EK++AIKDREQAYESLSRTAVSLQEHKRKAEEFEEKY +L PKA EH +MCEELLVMVE LNQKL    GK
Sbjct:   26 KRQQALTPTPQSPFTDFRHRGNEEEEEEEEEIVTFRIDGQHVPASNTTSTPGENELHKL--KDADDISRAETYQRVPLTCTQA---PAQSSVPIPTTDAVAFGGHPSYSCAKKPQEK--AMHNMEAVMEATAAKSVGETNPLGPASLPSGPCAPFDGSDMKDHDGLSLPKETAGIDKDVKEDQEMDELNGRLSEGLSLKYDFGGEHCPKYSQREVDLLVGKRVEEAKTALVAAQAMAHTEEMASWEAKLKKAEEDGQRWKAQCHGLEHDLSAELKSVEGAFAARLKETQDEVVSKEIQLRAVTAQLADMQQRIAVAEREGEESRQKLEEAGRKEARLVREMAEKLEAEKARRVKDVMDMKDRVAQRAQEQFAVAQEHFNQLASTLEGKEAEVSQYKGEMRRAQEEAGEALRQKDDAVAKARDLEAEAAALRVTAGRMEEEKERQARSAEEKMRKLRTALEKMEDEKSIAIKDREQAYESLSRTAVSLQEHKRKAEEFEEKYNTLFPKAMEHASMCEELLVMVESLNQKLESQEGK 553
The following BLAST results are available for this feature:
BLAST of NO07G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27323.14.000e-11252.15hypothetical protein Naga_100192g11 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00700NO07G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00700.1NO07G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00700.1.cds1NO07G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00700.1 ID=NO07G00700.1|Name=NO07G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1638bp
ATGGAGGAGACCACTGTCGCGGCGACCGTGCCCTTGAATCAGCGGCAGCA
ACCACATGACGACCACCTCGGCATAGTCCAACGGCTGAAAACCATCTCAC
CTACGCCTCAGCCGCCGTCCATGCACATGGAGGAGGAAGACGAGGAAGAG
ATTGTCACGTTCCGCATCGGGGGGCAGCACGTCCCCGCCGCCACGACCGC
CAACACCACAGCGGCTGCTGCCACAAGCAGCGCATTCGGTAAACAGCATG
AAAGCATTGTCGGCCTCTCGCAGCAGAAGCGTGCACCTTCTCCTTTGGCA
CCAGCGGTGTTCCCTCCCATGCCTTCCGCGGTCACCACTATGACAGCTCC
CTCCGACCCCATTGAACCCTCGTCTTCCAGTGCCGATGCAAGCCGACAGC
AGCAACCACAAACGACTGTGACGCGAACTTCAGCTGTCATGGCCGCCGCA
GCTGCCATGGTTAGCCCTCTCAAGGCTGCCGCTGGCTCTCTCAGCCCTAG
TAAAGCTACCAAATCCTCGGCCGGCACCGCCGCTAACACCTCCAATACCC
TCAAAAAAGACGACACGGACGAGGATGAAGAAATCGACGAGCTTAAACGC
CGGCTCTCTGAAGGCCTGTCCTTAAAATACGATGCAGGTGGCGAGCATTG
CCCCCAGTACTCCCAAAAACAGGTCGATCTCCTTCTTGAAACACGATTGG
AAGAAGTTAAGAACACGCTCCTTGCCTCCCATCTAGCAGCACAAGCCTCA
GAGAAGACCAAGTGGGAGGCTAGGGTCAAGGCATCCGAGGAGGAGGCGAC
TCGATGGAGAGTCCAATGCGAAATATTCGAGAAGGAATTGTCGGCGGAGG
TGAGTAGTGTTGAAGGGGCTTTCGCGGCGCGGTTAAAAGAAACGGAATCT
GATTTAATGTCAAAAGAGATTCAATTGAAAGCAGTGACAGCCCAGCTGGC
CGATATGCAGGCACGGACGACAGCCGCAGAGAAAGCGGCGGAGGAGTGTA
GAAGGAGGGTGGAGGAAGCGGGGCAGAAGGAGGAAAGGCTGTTGAGAGAC
GTCGCCGAGAAGCTGGAGCGGGAGAAGGCTCGAAGAGTAAAGGATGTGAT
AGAGATGAAGGAGAGGGTGGCAAAGAGGGCTCAAGAACAATTTGCGGTGG
CGCAGCAGCAATTTAACTCGTTGGAAAAAGCCTTGAAGGAGAAGGAGGGG
GAGGCCTCGCACCTCGCGGGGGAAGTGGAGAGGGCACAGGCTGAGGCTAC
GGAGGCGCTGCGGCAGAAGGAGAAAGCTGTATCGCAACTGGCGGCGATAG
AAGCGGATATGGCGTCGGTGAGAGCGGCGGCGGGTAGGAAGGAGGAGGAA
ATGGAACGACAGGCATGCGTGGCGGAGGGGAAGGTGGTGGAGTTGAAAGG
GGCTCTGGAGAAGGCGCACGTAGAAAAAGCGTTGGCGATTAAGGATAGAG
AGCAGGCATATGAGAGCCTGTCGAGGACGGCGGTCTCATTACAGGAGCAT
AAGAGGAAGGCGGAAGAATTTGAGGAGAAATATGTGAGTCTAGTGCCCAA
GGCGAGGGAGCATGAGACCATGTGTGAGGAGCTGCTGGTGATGGTGGAGG
ACCTGAATCAGAAGTTGGCGGGAGGAGGGGGCAAATAG
back to top

protein sequence of NO07G00700.1

>NO07G00700.1-protein ID=NO07G00700.1-protein|Name=NO07G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=546bp
MEETTVAATVPLNQRQQPHDDHLGIVQRLKTISPTPQPPSMHMEEEDEEE
IVTFRIGGQHVPAATTANTTAAAATSSAFGKQHESIVGLSQQKRAPSPLA
PAVFPPMPSAVTTMTAPSDPIEPSSSSADASRQQQPQTTVTRTSAVMAAA
AAMVSPLKAAAGSLSPSKATKSSAGTAANTSNTLKKDDTDEDEEIDELKR
RLSEGLSLKYDAGGEHCPQYSQKQVDLLLETRLEEVKNTLLASHLAAQAS
EKTKWEARVKASEEEATRWRVQCEIFEKELSAEVSSVEGAFAARLKETES
DLMSKEIQLKAVTAQLADMQARTTAAEKAAEECRRRVEEAGQKEERLLRD
VAEKLEREKARRVKDVIEMKERVAKRAQEQFAVAQQQFNSLEKALKEKEG
EASHLAGEVERAQAEATEALRQKEKAVSQLAAIEADMASVRAAAGRKEEE
MERQACVAEGKVVELKGALEKAHVEKALAIKDREQAYESLSRTAVSLQEH
KRKAEEFEEKYVSLVPKAREHETMCEELLVMVEDLNQKLAGGGGK*
back to top

mRNA from alignment at chr7:248972..250609-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00700.1 ID=NO07G00700.1|Name=NO07G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1638bp|location=Sequence derived from alignment at chr7:248972..250609- (Nannochloropsis oceanica)
ATGGAGGAGACCACTGTCGCGGCGACCGTGCCCTTGAATCAGCGGCAGCA
ACCACATGACGACCACCTCGGCATAGTCCAACGGCTGAAAACCATCTCAC
CTACGCCTCAGCCGCCGTCCATGCACATGGAGGAGGAAGACGAGGAAGAG
ATTGTCACGTTCCGCATCGGGGGGCAGCACGTCCCCGCCGCCACGACCGC
CAACACCACAGCGGCTGCTGCCACAAGCAGCGCATTCGGTAAACAGCATG
AAAGCATTGTCGGCCTCTCGCAGCAGAAGCGTGCACCTTCTCCTTTGGCA
CCAGCGGTGTTCCCTCCCATGCCTTCCGCGGTCACCACTATGACAGCTCC
CTCCGACCCCATTGAACCCTCGTCTTCCAGTGCCGATGCAAGCCGACAGC
AGCAACCACAAACGACTGTGACGCGAACTTCAGCTGTCATGGCCGCCGCA
GCTGCCATGGTTAGCCCTCTCAAGGCTGCCGCTGGCTCTCTCAGCCCTAG
TAAAGCTACCAAATCCTCGGCCGGCACCGCCGCTAACACCTCCAATACCC
TCAAAAAAGACGACACGGACGAGGATGAAGAAATCGACGAGCTTAAACGC
CGGCTCTCTGAAGGCCTGTCCTTAAAATACGATGCAGGTGGCGAGCATTG
CCCCCAGTACTCCCAAAAACAGGTCGATCTCCTTCTTGAAACACGATTGG
AAGAAGTTAAGAACACGCTCCTTGCCTCCCATCTAGCAGCACAAGCCTCA
GAGAAGACCAAGTGGGAGGCTAGGGTCAAGGCATCCGAGGAGGAGGCGAC
TCGATGGAGAGTCCAATGCGAAATATTCGAGAAGGAATTGTCGGCGGAGG
TGAGTAGTGTTGAAGGGGCTTTCGCGGCGCGGTTAAAAGAAACGGAATCT
GATTTAATGTCAAAAGAGATTCAATTGAAAGCAGTGACAGCCCAGCTGGC
CGATATGCAGGCACGGACGACAGCCGCAGAGAAAGCGGCGGAGGAGTGTA
GAAGGAGGGTGGAGGAAGCGGGGCAGAAGGAGGAAAGGCTGTTGAGAGAC
GTCGCCGAGAAGCTGGAGCGGGAGAAGGCTCGAAGAGTAAAGGATGTGAT
AGAGATGAAGGAGAGGGTGGCAAAGAGGGCTCAAGAACAATTTGCGGTGG
CGCAGCAGCAATTTAACTCGTTGGAAAAAGCCTTGAAGGAGAAGGAGGGG
GAGGCCTCGCACCTCGCGGGGGAAGTGGAGAGGGCACAGGCTGAGGCTAC
GGAGGCGCTGCGGCAGAAGGAGAAAGCTGTATCGCAACTGGCGGCGATAG
AAGCGGATATGGCGTCGGTGAGAGCGGCGGCGGGTAGGAAGGAGGAGGAA
ATGGAACGACAGGCATGCGTGGCGGAGGGGAAGGTGGTGGAGTTGAAAGG
GGCTCTGGAGAAGGCGCACGTAGAAAAAGCGTTGGCGATTAAGGATAGAG
AGCAGGCATATGAGAGCCTGTCGAGGACGGCGGTCTCATTACAGGAGCAT
AAGAGGAAGGCGGAAGAATTTGAGGAGAAATATGTGAGTCTAGTGCCCAA
GGCGAGGGAGCATGAGACCATGTGTGAGGAGCTGCTGGTGATGGTGGAGG
ACCTGAATCAGAAGTTGGCGGGAGGAGGGGGCAAATAG
back to top

Coding sequence (CDS) from alignment at chr7:248972..250609-

>NO07G00700.1 ID=NO07G00700.1|Name=NO07G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=1638bp|location=Sequence derived from alignment at chr7:248972..250609- (Nannochloropsis oceanica)
ATGGAGGAGACCACTGTCGCGGCGACCGTGCCCTTGAATCAGCGGCAGCA
ACCACATGACGACCACCTCGGCATAGTCCAACGGCTGAAAACCATCTCAC
CTACGCCTCAGCCGCCGTCCATGCACATGGAGGAGGAAGACGAGGAAGAG
ATTGTCACGTTCCGCATCGGGGGGCAGCACGTCCCCGCCGCCACGACCGC
CAACACCACAGCGGCTGCTGCCACAAGCAGCGCATTCGGTAAACAGCATG
AAAGCATTGTCGGCCTCTCGCAGCAGAAGCGTGCACCTTCTCCTTTGGCA
CCAGCGGTGTTCCCTCCCATGCCTTCCGCGGTCACCACTATGACAGCTCC
CTCCGACCCCATTGAACCCTCGTCTTCCAGTGCCGATGCAAGCCGACAGC
AGCAACCACAAACGACTGTGACGCGAACTTCAGCTGTCATGGCCGCCGCA
GCTGCCATGGTTAGCCCTCTCAAGGCTGCCGCTGGCTCTCTCAGCCCTAG
TAAAGCTACCAAATCCTCGGCCGGCACCGCCGCTAACACCTCCAATACCC
TCAAAAAAGACGACACGGACGAGGATGAAGAAATCGACGAGCTTAAACGC
CGGCTCTCTGAAGGCCTGTCCTTAAAATACGATGCAGGTGGCGAGCATTG
CCCCCAGTACTCCCAAAAACAGGTCGATCTCCTTCTTGAAACACGATTGG
AAGAAGTTAAGAACACGCTCCTTGCCTCCCATCTAGCAGCACAAGCCTCA
GAGAAGACCAAGTGGGAGGCTAGGGTCAAGGCATCCGAGGAGGAGGCGAC
TCGATGGAGAGTCCAATGCGAAATATTCGAGAAGGAATTGTCGGCGGAGG
TGAGTAGTGTTGAAGGGGCTTTCGCGGCGCGGTTAAAAGAAACGGAATCT
GATTTAATGTCAAAAGAGATTCAATTGAAAGCAGTGACAGCCCAGCTGGC
CGATATGCAGGCACGGACGACAGCCGCAGAGAAAGCGGCGGAGGAGTGTA
GAAGGAGGGTGGAGGAAGCGGGGCAGAAGGAGGAAAGGCTGTTGAGAGAC
GTCGCCGAGAAGCTGGAGCGGGAGAAGGCTCGAAGAGTAAAGGATGTGAT
AGAGATGAAGGAGAGGGTGGCAAAGAGGGCTCAAGAACAATTTGCGGTGG
CGCAGCAGCAATTTAACTCGTTGGAAAAAGCCTTGAAGGAGAAGGAGGGG
GAGGCCTCGCACCTCGCGGGGGAAGTGGAGAGGGCACAGGCTGAGGCTAC
GGAGGCGCTGCGGCAGAAGGAGAAAGCTGTATCGCAACTGGCGGCGATAG
AAGCGGATATGGCGTCGGTGAGAGCGGCGGCGGGTAGGAAGGAGGAGGAA
ATGGAACGACAGGCATGCGTGGCGGAGGGGAAGGTGGTGGAGTTGAAAGG
GGCTCTGGAGAAGGCGCACGTAGAAAAAGCGTTGGCGATTAAGGATAGAG
AGCAGGCATATGAGAGCCTGTCGAGGACGGCGGTCTCATTACAGGAGCAT
AAGAGGAAGGCGGAAGAATTTGAGGAGAAATATGTGAGTCTAGTGCCCAA
GGCGAGGGAGCATGAGACCATGTGTGAGGAGCTGCTGGTGATGGTGGAGG
ACCTGAATCAGAAGTTGGCGGGAGGAGGGGGCAAATAG
back to top
Synonyms
Publications