NO07G00550.1, NO07G00550.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G00550.1
Unique Name	NO07G00550.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3041
Alignment location	chr7:203059..206327 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:203059..206327 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO07G00550.1 vs.
Match: EWM27310.1 (protein kinase [Nannochloropsis gaditana])

HSP 1 Score: 322.0 bits (824), Expect = 2.800e-84
Identity = 189/395 (47.85%), Postives = 242/395 (61.27%), Query Frame = 0

Query:    2 TPYAPGGDLFNYLARRPPAR-RHLSERKACAFLLDIVEALTYLKKNGMAHRDVSLENVVLALGEVMTEEEVWREEAEDWIGSAPSALYPVAGGGGGGAAAAAAAAAAVAGGQQRRVHDQCVLLPAPYPEVLLGEQAFLPTMPHFFHSTGYGPAPPPGSHGP----THHQQAGHVPITVGQEMRAAEASALEPSPPPQAHHYRHHYYNVLHPPSSSSSPSYSSNSSSASPPPHPSL----PPPPRRHWRCTLIDLGMASRLPESKDGIKIRRSYHQSRGKPGYVSPEIFYEQPSDGFSSDIWSLGVILYTLLTGHPLYASPWDPAFEALVGGKTRRLIHHYKLKYGCSIHLTAEDLICAMLNPCPSERPCLAQIKASAWVCDVLRGRQEEQQQQQQ 388
            TPY PGGDL  Y+++RP  + R L E KAC F LDIV AL YL+   + HRD+SLEN+VL LGE MT  E   E+ E+      + L+     GG G    A   A      +  +HDQ VLLP P+P+VLLGE A LP MPH  H+ GYGPAPPP   G     T+   AGH+  +   +  A      +P P P+AHHYRH YY+ L      + P  S   S   PPP PS     PPPPRRHWRC LID GMA RLPESK G  I  +  + RGK GYVSPE +YEQP +G S+D+WSLGVILY  LTGHPLY  PWDPAF+AL  G+ R+++ HY+ +    +  TAEDLICAML+P P +RP L++++ + WV +V    +  ++ +++
Sbjct:  172 TPYGPGGDLLTYISQRPGGKARRLGEDKACRFFLDIVAALEYLEAARVVHRDLSLENLVLTLGEEMTAWEAEEEKEEE------AVLWGEEEEGGEGGRQDADGGAREG---RAHIHDQRVLLPPPHPDVLLGENARLPHMPHLLHALGYGPAPPPVPPGTLGEVTNVHVAGHLRASTVTDREAMLDFLRQPPPGPEAHHYRHLYYHTLQ----DALPPSSFPVSPFPPPPPPSTPAPKPPPPRRHWRCVLIDFGMAVRLPESKSGKTIVLTQQRCRGKLGYVSPESYYEQPINGQSTDVWSLGVILYIFLTGHPLYRYPWDPAFKALAAGEARQVLAHYREEMKLRLPETAEDLICAMLHPDPKKRPTLSELRGAPWVREVQERTRRAREGREE 553

The following BLAST results are available for this feature:

BLAST of NO07G00550.1 vs.

BLAST of NO07G00550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27310.1	2.800e-84	47.85	protein kinase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G00550	NO07G00550	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G00550.1	NO07G00550.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G00550.1.cds1	NO07G00550.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G00550.1.cds2	NO07G00550.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:203059..206327-
coding sequence from alignment at chr7:203059..206327-

mRNA sequence

>NO07G00550.1 ID=NO07G00550.1|Name=NO07G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=3041bp
ACAGGTGCATGGACGATAATGGCTTCGTTCCCCCACACCTTGAAAGGATT
GCGTGGGAGCGGCGGCTAGTCCGTGGCTTGGCTGGGCACACATTTAGTGA
AACACTTTTGATCACGGAGCCATCGGCTTCTGATGGTGCTGATCGAGATG
ACATACGAGAGGGAAGGCAACCGCAACCGCGTCCCCCATGGCCCCTGCTA
CGACGAGATGCATCAAGAGCCTATTTGTTGCTTCGCCTCCTGTCCCATGA
CAAGCTCCATGTGGCCACGATACTGGCCTCTGAAGTTCGAGAAGACAAGG
CCACTGGCGTCATGATCCAAGAAACGGGGCCATACTATGTGGTCAAGGTG
AGTCAGAGGGAAAGGAAGGGCGGGTGGGGGAAGGGGGGAGCACAGGGTAT
CTCATAAGTTCAACCAGCTGGTGGGCAGCATTAAGGAAGAAGCCCCTTGA
CAGGGGAGGGAGGAAAGGCCCCCCGAAAGTCGTCGGAGTTTTTCCCCTGA
TTCCACCTCTAATACTATCTTACCCCTTTCCTCCCTCTTCATCGATGAAT
CACGCTCAACAGCCGTCGAAATCTTACCGCTCTACCCCATCCTATTACAC
TTACCCCCTTTGTCCCTGCCTCAATCCCTCCCTCCTTTCCTCCTTAGGTC
GTCCGCCTAGACTGCCTGGCCATCGACCCGATCGAAAACCCCTTCAACGA
AGCAGCCGCCCTCCAGCTCCTCCTACAAAACGAAGGCCTCCTTGGAACCC
TCCCGCCCTCCCTCCCTCGCCTCCATGCAGCTTTCAAAGACCAACACCAC
CTGTACCTCATGACACCCTACGCTCCTGGTGGAGACCTGTTCAACTACCT
CGCTCGTCGTCCCCCCGCCCGCCGACATCTCTCTGAACGCAAGGCCTGTG
CCTTTCTTTTGGACATCGTCGAAGCGTTGACTTACTTGAAAAAAAACGGC
ATGGCGCACAGGGACGTGTCGCTCGAAAACGTGGTCTTGGCCCTGGGCGA
GGTCATGACGGAGGAAGAGGTTTGGAGGGAGGAAGCAGAAGATTGGATTG
GGAGCGCTCCTTCGGCGCTATACCCGGTAGCAGGAGGAGGAGGAGGAGGA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGGCAACAGCG
AAGGGTGCACGACCAGTGCGTCCTCCTCCCTGCCCCCTACCCGGAAGTCT
TGCTGGGCGAGCAAGCCTTCTTGCCGACGATGCCTCACTTCTTCCACTCC
ACAGGCTACGGGCCTGCCCCTCCTCCCGGCAGTCACGGTCCGACCCACCA
CCAGCAGGCTGGTCACGTCCCCATTACCGTTGGGCAAGAAATGCGAGCCG
CTGAAGCCTCGGCCCTTGAGCCTTCCCCCCCCCCTCAAGCCCATCACTAC
CGCCACCACTACTACAACGTTCTCCACCCTCCCTCCTCCTCCTCATCCCC
CTCCTACTCCTCCAACAGCTCTTCAGCCTCCCCTCCGCCCCACCCCTCCC
TCCCTCCCCCACCCCGCCGCCATTGGCGGTGCACCCTCATCGACCTAGGA
ATGGCTTCCCGCCTGCCCGAATCCAAAGACGGCATTAAAATTCGAAGATC
CTACCATCAAAGCAGGGGCAAACCGGGCTATGTGTCCCCCGAGATCTTCT
ACGAGCAACCTTCTGACGGGTTTTCGTCGGATATATGGTCCTTGGGCGTG
ATACTGTACACACTCTTGACCGGCCACCCGCTTTATGCCAGCCCCTGGGA
CCCGGCGTTTGAAGCCCTAGTGGGGGGAAAGACGAGGCGATTGATACACC
ATTATAAGCTGAAATATGGGTGTTCCATTCACCTAACCGCTGAAGACCTC
ATCTGTGCAATGCTGAATCCCTGCCCCTCCGAGCGCCCATGTCTCGCTCA
AATCAAGGCCTCCGCCTGGGTCTGTGACGTGCTTCGTGGCCGACAGGAGG
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAG
CAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCGGCAGCAGCAGCCTGGAGA
AATAGGTAATGGAGGTGTTGCAGTAGCAGCAGCAGCAGTGAGGAGTGCTA
GGTAAAGGAGGAGTATAAAAAGGATGAAAAAAAGACGGAAGGAAAGAATT
CCTGGTTCTACGACTGGAGAGGAAATGAGGAGAGGATCGCACGACAAGGT
GATGGCGGACAAGGCTTTACGCATTGAAAGGAAAACGGGTGACTCAAGTG
AGAAAATGACAGGGGAATGTACTAGCACCACCGAGAGTAAACAAGCGGAT
AATGGATGACTGAAAGGAAACTGTATGAGCACTTACAAGAGAGATTGAAG
GGGTAATCGATGATTGAAATGTATGAGTTAATCGATGATTGAAATGTATG
AGCAGGAAAAAAGTGAAAGGGTACTGGGTGATCCAGAGAGAGATTACAAC
GGATATGATTGGCGACATAAAGAGAAAGTGGAAGAGTAATGGATGATCAA
GAGATGGAAATAGAATATGGATAGGATTAGCGCCATAAAGAGAGAGAGTA
CACGGAACGGATTTGAAAGGAAAAGAAAGCGAGAGGGGAATGGATTAGTA
ATAGAAAGAAGGAGAAAGGAAATGGAGCACCACAGAGATAAAGAGAAGAG
GGAATGATGAGTAAGGGAGAGAAAGCGAAAGCCGAATTTATTATTTAGAT
TGATTGAAATGTATGAGCACTAAGGAGAGAACGCGAAAGGGGAATGGATG
GGCAACACCAGAAAGAGCCGGCAAATATGATATGGAAACCACGAGAAAAG
CCAAAAGAAAAAAGAAATATAATTTTAATGCGACACCGAAAGGATTGTAT
AAATGAAGAGGACAGAGGCAGAAAATGAAAGGGGAAAAGCTGACCGTGGA
AAGGAGAAGGAGAAATCTACGCTCATAAGACACCACGTTGACCACAATCA
TACTTGAGCCCATATTCACATCCACACCCTCACCAAAACGACGACGAATG
CAAGCACGTGCAAAAGAAAAGAAAAACGTGCATCACTGCAA

protein sequence of NO07G00550.1

>NO07G00550.1-protein ID=NO07G00550.1-protein|Name=NO07G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MTPYAPGGDLFNYLARRPPARRHLSERKACAFLLDIVEALTYLKKNGMAH
RDVSLENVVLALGEVMTEEEVWREEAEDWIGSAPSALYPVAGGGGGGAAA
AAAAAAAVAGGQQRRVHDQCVLLPAPYPEVLLGEQAFLPTMPHFFHSTGY
GPAPPPGSHGPTHHQQAGHVPITVGQEMRAAEASALEPSPPPQAHHYRHH
YYNVLHPPSSSSSPSYSSNSSSASPPPHPSLPPPPRRHWRCTLIDLGMAS
RLPESKDGIKIRRSYHQSRGKPGYVSPEIFYEQPSDGFSSDIWSLGVILY
TLLTGHPLYASPWDPAFEALVGGKTRRLIHHYKLKYGCSIHLTAEDLICA
MLNPCPSERPCLAQIKASAWVCDVLRGRQEEQQQQQQQQQQQQQQQEQQQ
QQQQQEQRQQQPGEIGNGGVAVAAAAVRSAR*

mRNA from alignment at chr7:203059..206327-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G00550.1 ID=NO07G00550.1|Name=NO07G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=3269bp|location=Sequence derived from alignment at chr7:203059..206327- (Nannochloropsis oceanica)
ACAGGTGCATGGACGATAATGGCTTCGTTCCCCCACACCTTGAAAGGATT
GCGTGGGAGCGGCGGCTAGTCCGTGGCTTGGCTGGGCACACATTTAGTGA
AACACTTTTGATCACGGAGCCATCGGCTTCTGATGGTGCTGATCGAGATG
ACATACGAGAGGGAAGGCAACCGCAACCGCGTCCCCCATGGCCCCTGCTA
CGACGAGATGCATCAAGAGCCTATTTGTTGCTTCGCCTCCTGTCCCATGA
CAAGCTCCATGTGGCCACGATACTGGCCTCTGAAGTTCGAGAAGACAAGG
CCACTGGCGTCATGATCCAAGAAACGGGGCCATACTATGTGGTCAAGGTG
AGTCAGAGGGAAAGGAAGGGCGGGTGGGGGAAGGGGGGAGCACAGGGTAT
CTCATAAGTTCAACCAGCTGGTGGGCAGCATTAAGGAAGAAGCCCCTTGA
CAGGGGAGGGAGGAAAGGCCCCCCGAAAGTCGTCGGAGTTTTTCCCCTGA
TTCCACCTCTAATACTATCTTACCCCTTTCCTCCCTCTTCATCGATGAAT
CACGCTCAACAGCCGTCGAAATCTTACCGCTCTACCCCATCCTATTACAC
TTACCCCCTTTGTCCCTGCCTCAATCCCTCCCTCCTTTCCTCCTTAGGTC
GTCCGCCTAGACTGCCTGGCCATCGACCCGATCGAAAACCCCTTCAACGA
AGCAGCCGCCCTCCAGCTCCTCCTACAAAACGAAGGCCTCCTTGGAACCC
TCCCGCCCTCCCTCCCTCGCCTCCATGCAGCTTTCAAAGACCAACACCAC
CTGTACCTCATGACACCCTACGCTCCTGGTGGAGACCTGTTCAACTACCT
CGCTCGTCGTCCCCCCGCCCGCCGACATCTCTCTGAACGCAAGGCCTGTG
CCTTTCTTTTGGACATCGTCGAAGCGTTGACTTACTTGAAAAAAAACGGC
ATGGCGCACAGGGACGTGTCGCTCGAAAACGTGGTCTTGGCCCTGGGCGA
GGTCATGACGGAGGAAGAGGTTTGGAGGGAGGAAGCAGAAGATTGGATTG
GGAGCGCTCCTTCGGCGCTATACCCGGTAGCAGGAGGAGGAGGAGGAGGA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGGCAACAGCG
AAGGGTGCACGACCAGTGCGTCCTCCTCCCTGCCCCCTACCCGGAAGTCT
TGCTGGGCGAGCAAGCCTTCTTGCCGACGATGCCTCACTTCTTCCACTCC
ACAGGCTACGGGCCTGCCCCTCCTCCCGGCAGTCACGGTCCGACCCACCA
CCAGCAGGCTGGTCACGTCCCCATTACCGTTGGGCAAGAAATGCGAGCCG
CTGAAGCCTCGGCCCTTGAGCCTTCCCCCCCCCCTCAAGCCCATCACTAC
CGCCACCACTACTACAACGTTCTCCACCCTCCCTCCTCCTCCTCATCCCC
CTCCTACTCCTCCAACAGCTCTTCAGCCTCCCCTCCGCCCCACCCCTCCC
TCCCTCCCCCACCCCGCCGCCATTGGCGGTGCACCCTCATCGACCTAGGA
ATGGCTTCCCGCCTGCCCGAATCCAAAGACGGCATTAAAATTCGAAGATC
CTACCATCAAAGCAGGGGCAAACCGGGCTATGTGTCCCCCGAGATCTTCT
ACGAGCAACCTTCTGACGGGTTTTCGTCGGATATATGGTCCTTGGGCGTG
ATACTGTACACACTCTTGACCGGCCACCCGCTTTATGCCAGCCCCTGGGA
CCCGGCGTTTGAAGCCCTAGTGGGGGGAAAGACGAGGCGATTGATACACC
ATTATAAGGTAGGGTATGTGTGTGTGTGGGTGTGAGGGTGTCTGACTCTC
TCTCTCTCTTTCCCTCTCTCTCTCTTGTTCGTTGTCTCGCCTTTTCCGAA
GATCACAAACAAAGATCATACACCAAATAATCAAAATAAGTAATATAAGA
TATAGATGAACAACTAGTATGCAGTATGTATATCAGGACAAGATATACCA
AAAGTCTCACTCACGACTACCAACAAACAACGACAGCTGAAATATGGGTG
TTCCATTCACCTAACCGCTGAAGACCTCATCTGTGCAATGCTGAATCCCT
GCCCCTCCGAGCGCCCATGTCTCGCTCAAATCAAGGCCTCCGCCTGGGTC
TGTGACGTGCTTCGTGGCCGACAGGAGGAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAGC
AGGAGCAGCGGCAGCAGCAGCCTGGAGAAATAGGTAATGGAGGTGTTGCA
GTAGCAGCAGCAGCAGTGAGGAGTGCTAGGTAAAGGAGGAGTATAAAAAG
GATGAAAAAAAGACGGAAGGAAAGAATTCCTGGTTCTACGACTGGAGAGG
AAATGAGGAGAGGATCGCACGACAAGGTGATGGCGGACAAGGCTTTACGC
ATTGAAAGGAAAACGGGTGACTCAAGTGAGAAAATGACAGGGGAATGTAC
TAGCACCACCGAGAGTAAACAAGCGGATAATGGATGACTGAAAGGAAACT
GTATGAGCACTTACAAGAGAGATTGAAGGGGTAATCGATGATTGAAATGT
ATGAGTTAATCGATGATTGAAATGTATGAGCAGGAAAAAAGTGAAAGGGT
ACTGGGTGATCCAGAGAGAGATTACAACGGATATGATTGGCGACATAAAG
AGAAAGTGGAAGAGTAATGGATGATCAAGAGATGGAAATAGAATATGGAT
AGGATTAGCGCCATAAAGAGAGAGAGTACACGGAACGGATTTGAAAGGAA
AAGAAAGCGAGAGGGGAATGGATTAGTAATAGAAAGAAGGAGAAAGGAAA
TGGAGCACCACAGAGATAAAGAGAAGAGGGAATGATGAGTAAGGGAGAGA
AAGCGAAAGCCGAATTTATTATTTAGATTGATTGAAATGTATGAGCACTA
AGGAGAGAACGCGAAAGGGGAATGGATGGGCAACACCAGAAAGAGCCGGC
AAATATGATATGGAAACCACGAGAAAAGCCAAAAGAAAAAAGAAATATAA
TTTTAATGCGACACCGAAAGGATTGTATAAATGAAGAGGACAGAGGCAGA
AAATGAAAGGGGAAAAGCTGACCGTGGAAAGGAGAAGGAGAAATCTACGC
TCATAAGACACCACGTTGACCACAATCATACTTGAGCCCATATTCACATC
CACACCCTCACCAAAACGACGACGAATGCAAGCACGTGCAAAAGAAAAGA
AAAACGTGCATCACTGCAA

Coding sequence (CDS) from alignment at chr7:203059..206327-

>NO07G00550.1 ID=NO07G00550.1|Name=NO07G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at chr7:203059..206327- (Nannochloropsis oceanica)
ATGACACCCTACGCTCCTGGTGGAGACCTGTTCAACTACCTCGCTCGTCG
TCCCCCCGCCCGCCGACATCTCTCTGAACGCAAGGCCTGTGCCTTTCTTT
TGGACATCGTCGAAGCGTTGACTTACTTGAAAAAAAACGGCATGGCGCAC
AGGGACGTGTCGCTCGAAAACGTGGTCTTGGCCCTGGGCGAGGTCATGAC
GGAGGAAGAGGTTTGGAGGGAGGAAGCAGAAGATTGGATTGGGAGCGCTC
CTTCGGCGCTATACCCGGTAGCAGGAGGAGGAGGAGGAGGAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGTTGCAGGAGGGCAACAGCGAAGGGTGCA
CGACCAGTGCGTCCTCCTCCCTGCCCCCTACCCGGAAGTCTTGCTGGGCG
AGCAAGCCTTCTTGCCGACGATGCCTCACTTCTTCCACTCCACAGGCTAC
GGGCCTGCCCCTCCTCCCGGCAGTCACGGTCCGACCCACCACCAGCAGGC
TGGTCACGTCCCCATTACCGTTGGGCAAGAAATGCGAGCCGCTGAAGCCT
CGGCCCTTGAGCCTTCCCCCCCCCCTCAAGCCCATCACTACCGCCACCAC
TACTACAACGTTCTCCACCCTCCCTCCTCCTCCTCATCCCCCTCCTACTC
CTCCAACAGCTCTTCAGCCTCCCCTCCGCCCCACCCCTCCCTCCCTCCCC
CACCCCGCCGCCATTGGCGGTGCACCCTCATCGACCTAGGAATGGCTTCC
CGCCTGCCCGAATCCAAAGACGGCATTAAAATTCGAAGATCCTACCATCA
AAGCAGGGGCAAACCGGGCTATGTGTCCCCCGAGATCTTCTACGAGCAAC
CTTCTGACGGGTTTTCGTCGGATATATGGTCCTTGGGCGTGATACTGTAC
ACACTCTTGACCGGCCACCCGCTTTATGCCAGCCCCTGGGACCCGGCGTT
TGAAGCCCTAGTGGGGGGAAAGACGAGGCGATTGATACACCATTATAAGC
TGAAATATGGGTGTTCCATTCACCTAACCGCTGAAGACCTCATCTGTGCA
ATGCTGAATCCCTGCCCCTCCGAGCGCCCATGTCTCGCTCAAATCAAGGC
CTCCGCCTGGGTCTGTGACGTGCTTCGTGGCCGACAGGAGGAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAG
CAGCAGCAGCAGCAGGAGCAGCGGCAGCAGCAGCCTGGAGAAATAGGTAA
TGGAGGTGTTGCAGTAGCAGCAGCAGCAGTGAGGAGTGCTAGGTAA

Synonyms

Publications