NO07G00480.1, NO07G00480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00480.1
Unique NameNO07G00480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1427
Alignment locationchr7:175203..177186 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:175203..177186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G00480.1 vs.
Match: OQR99864.1 (hypothetical protein THRCLA_06353 [Thraustotheca clavata])

HSP 1 Score: 187.2 bits (474), Expect = 7.300e-44
Identity = 90/193 (46.63%), Postives = 127/193 (65.80%), Query Frame = 0 
Query:   35 LAQNTAWLCMGIFGFTYLLFQKKLLPFRYARLAAKLFFWPTIPITILNRWSNYWTAIDNTLIMGAAPLAALGHVESLRDLGVTGVINLCDEYAGPIRMYQRHGIEQLYLPTVDHFEPTISDLYRAVEFISLRHAKGEKCFVHCKAGHGRSAAVALSWLATQNPGVSIQLLNQRLGEKRKVRKTLYKQNCVKGF 228
            +  NT  L + + G  Y+ FQ  LLP  +AR+  ++ F+PT+P+T L R  NY+T ID+ + +GA PL  L HV+ L   GV  V+NLCDEY GPI  Y+  GI+QL+LPTVDH EPT+ D+ +A+EFI     +G + +VHCKAG GRSAA+A  WL  Q+   S++   + L EKR+VRK+L++Q  +  F
Sbjct:    1 MTSNTIVLPLTLCGVLYVAFQLHLLPPSFARIVGRITFFPTLPLTYLARRLNYYTLIDSHVFLGAVPLVFLDHVKELHARGVRAVVNLCDEYQGPISAYRAMGIKQLWLPTVDHTEPTLQDIEKAMEFIQFHKERGSRVYVHCKAGAGRSAAIAYCWLLQQHLNWSLKETQEYLNEKRRVRKSLFRQTNIVAF 193
The following BLAST results are available for this feature:
BLAST of NO07G00480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR99864.17.300e-4446.63hypothetical protein THRCLA_06353 [Thraustotheca c... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00480NO07G00480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00480.1NO07G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00480.1.cds1NO07G00480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00480.1.cds2NO07G00480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00480.1.cds3NO07G00480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00480.1.cds4NO07G00480.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00480.1.cds5NO07G00480.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00480.1.cds6NO07G00480.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00480.1 ID=NO07G00480.1|Name=NO07G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1427bp
TGGGATTGGCTGATTTATCTGCGTGCGGCCCCCTCTGAGAGCATTTGGAG
GCTGATGTAGTGAGAGCACGGCCTCTCTGGTGACCATGCTATTGTCCCTG
TGGCATTTATGTGTCGAGTGGATGCAAAAGAGAGGGTGAGGGTTGAGTGG
ACGAATCTCGAGGTCGAGGGGGAGGCGGAAAATTATTTTGCCGGGTTTGA
AGCAAGCAAGTGTGCAAGCACGGATGTCTTTGAGCTATAGCATTGTTTTT
CCTTTCACAGTCATACGACAGGGCACCAGCTATAGGACCCAATCCTCCTC
CTTTTCTATCACCACCGTCTGCAGGCACCTTAAAAACCCTTGAGTCCCGG
TTGTCTCAACCTGTCCTTTTTTCCTCTCCTACAGGCAGCAAGGAACTGAA
GCTCCCTCCGCGTACACCACTGCCTCTTCCATTCACTCTTCACCGGAAGC
TGTCCACTAGCACGACAAGTAACACAGAAACTTCTGTCGGAGCAGCAGCT
TCCATGGGTTCCTTCGGCCCTGGTCGTAGCTCCTCGTCGGGAAACGCAAA
CAAGGCACTCTCCGATGCGCTCTCCAAGGGCAATGGCTTGCCAGGCGCAG
GTGCCTTGGCCCAAAACACGGCATGGCTCTGTATGGGTATCTTCGGGTTC
ACCTACCTCCTGTTCCAAAAGAAGCTTCTTCCCTTCCGGTACGCCCGCCT
GGCGGCCAAGCTTTTTTTCTGGCCCACCATACCTATCACCATATTGAATC
GATGGAGCAACTATTGGACAGCGATAGACAACACTCTCATCATGGGCGCG
GCGCCTCTCGCCGCTCTCGGTCACGTGGAGTCCTTGCGCGATCTAGGCGT
GACGGGCGTCATAAATCTCTGCGACGAGTACGCAGGCCCTATCCGAATGT
ACCAACGCCACGGCATCGAGCAGCTCTACCTCCCCACGGTGGACCACTTC
GAACCTACCATCTCCGACCTCTACCGCGCTGTGGAGTTCATCTCCCTGCG
CCACGCCAAGGGCGAGAAGTGCTTCGTGCACTGCAAAGCAGGGCATGGTC
GCTCCGCTGCAGTTGCCCTTTCTTGGCTGGCGACACAGAATCCAGGTGTA
AGCATCCAACTCCTCAACCAGAGGCTGGGGGAAAAGCGCAAAGTCCGCAA
GACGCTGTACAAACAAAATTGTGTCAAAGGCTTCCTGAGGGAGTGGGGCT
TGCAGTCCAAGGGCGTGAAGAAGGGAGAAGTCGAGATGGTGGAGAGGAAG
GAGGGGTCAGTGGAGGAGGAGGAGGGAGGAGGAGGAGGGAGGGGGAAGAT
TGCGATGACAACGAGGAAAAAGGGGCAGCAGCAGGTCGTGAAGGGAAGGG
GGGATGGAAGGACCGGGGCGGGAAGGAGGAGATGAATACGTGGGACATCA
TTGTTGAAAGCAACGAACTGAACAGGC
back to top

protein sequence of NO07G00480.1

>NO07G00480.1-protein ID=NO07G00480.1-protein|Name=NO07G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MGSFGPGRSSSSGNANKALSDALSKGNGLPGAGALAQNTAWLCMGIFGFT
YLLFQKKLLPFRYARLAAKLFFWPTIPITILNRWSNYWTAIDNTLIMGAA
PLAALGHVESLRDLGVTGVINLCDEYAGPIRMYQRHGIEQLYLPTVDHFE
PTISDLYRAVEFISLRHAKGEKCFVHCKAGHGRSAAVALSWLATQNPGVS
IQLLNQRLGEKRKVRKTLYKQNCVKGFLREWGLQSKGVKKGEVEMVERKE
GSVEEEEGGGGGRGKIAMTTRKKGQQQVVKGRGDGRTGAGRRR*
back to top

mRNA from alignment at chr7:175203..177186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00480.1 ID=NO07G00480.1|Name=NO07G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1984bp|location=Sequence derived from alignment at chr7:175203..177186- (Nannochloropsis oceanica)
TGGGATTGGCTGATTTATCTGCGTGCGGCCCCCTCTGAGAGCATTTGGAG
GCTGATGTAGTGAGAGCACGGCCTCTCTGGTGACCATGCTATTGTCCCTG
TGGCATTTATGTGTCGAGTGGATGCAAAAGAGAGGGTGAGGGTTGAGTGG
ACGAATCTCGAGGTCGAGGGGGAGGCGGAAAATTATTTTGCCGGGTTTGA
AGCAAGCAAGTGTGCAAGCACGGATGTCTTTGAGCTATAGCATTGTTTTT
CCTTTCACAGTCATACGACAGGGCACCAGCTATAGGACCCAATCCTCCTC
CTTTTCTATCACCACCGTCTGCAGGCACCTTAAAAACCCTTGAGTCCCGG
TTGTCTCAACCTGTCCTTTTTTCCTCTCCTACAGGCAGCAAGGAACTGAA
GCTCCCTCCGCGTACACCACTGCCTCTTCCATTCACTCTTCACCGGAAGC
TGTCCACTAGCACGACAAGTAACACAGAAACTTCTGTCGGAGCAGCAGCT
TCCATGGGTTCCTTCGGCCCTGGTCGTAGCTCCTCGTCGGGAAACGCAAA
CAAGGCACTCTCCGGTAGGCCATCCTCCTGCCTCCCCCCCCCTTCCTCAC
CTCCCCGCCCTTTGCCCTCTATGCGTGTCGAGTCCTCATCCACATCACGT
CTTTTCCTTTCCATATCCCTCATACACATACACAGATGCGCTCTCCAAGG
GCAATGGCTTGCCAGGCGCAGGTGCCTTGGCCCAAAACACGGCATGGCTC
TGTATGGGTAAGCACACATACACAGGTATGGACTCCTTCCCATCATCATC
CAATCTCTCTCTCCCTCCCTCCTCTCTCACCTCCAGGTATCTTCGGGTTC
ACCTACCTCCTGTTCCAAAAGAAGCTTCTTCCCTTCCGGTACGCCCGCCT
GGCGGCCAAGCTTTTTTTCTGGCCCACCATACCTATCACCATATTGAATC
GATGGAGCAACTATTGGACAGCGATAGACAGTACGACAGGGAGGGAAAGA
GGAAGGGAAGGAGGGTCGCATCCCCGCGAAGGCTGCATTTCCTCTTATCC
CTCCACTCTCCCCTCATCCCCCCCTTTCCTATCAAAAAAAGACACTCTCA
TCATGGGCGCGGCGCCTCTCGCCGCTCTCGGTCACGTGGAGTCCTTGCGC
GATCTAGGCGTGACGGGCGTCATAAATCTCTGCGACGAGTACGCAGGCCC
TATCCGAATGTACCAACGGTGAGCTTCCCTCCCTCCCTCCCTCCTTCCCT
CTCGCCGCCCGCCCATGCATCCCGTCCTAACCCCCTCTCTCTTCCTTTCC
TTCTCCCCTTGTCAGCCACGGCATCGAGCAGCTCTACCTCCCCACGGTGG
ACCACTTCGAACCTACCATCTCCGACCTCTACCGCGCTGTGGAGTTCATC
TCCCTGCGCCACGCCAAGGGCGAGAAGTGCTTCGTGCACTGCAAAGCAGG
GCATGGTCGCTCCGCTGCAGTTGCCCTTTCTTGGCTGGCGACACAGAATC
CAGGTAAGCCCGTCAGCCAGCCCTCCCTCCCTCCCTTTACCCCTCCCTTC
CTAAATGGGGCTTCAGCCAGAACAGAGGGCAGTCTTTCACTCACGCACTC
GCCCCCCCCCCCCTTCCTTCCTCCCTTGCTGCCTCCCTCCTCCTTCCTTA
AGGTGTAAGCATCCAACTCCTCAACCAGAGGCTGGGGGAAAAGCGCAAAG
TCCGCAAGACGCTGTACAAACAAAATTGTGTCAAAGGCTTCCTGAGGGAG
TGGGGCTTGCAGTCCAAGGGCGTGAAGAAGGGAGAAGTCGAGATGGTGGA
GAGGAAGGAGGGGTCAGTGGAGGAGGAGGAGGGAGGAGGAGGAGGGAGGG
GGAAGATTGCGATGACAACGAGGAAAAAGGGGCAGCAGCAGGTCGTGAAG
GGAAGGGGGGATGGAAGGACCGGGGCGGGAAGGAGGAGATGAATACGTGG
GACATCATTGTTGAAAGCAACGAACTGAACAGGC
back to top

Coding sequence (CDS) from alignment at chr7:175203..177186-

>NO07G00480.1 ID=NO07G00480.1|Name=NO07G00480.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr7:175203..177186- (Nannochloropsis oceanica)
ATGGGTTCCTTCGGCCCTGGTCGTAGCTCCTCGTCGGGAAACGCAAACAA
GGCACTCTCCGATGCGCTCTCCAAGGGCAATGGCTTGCCAGGCGCAGGTG
CCTTGGCCCAAAACACGGCATGGCTCTGTATGGGTATCTTCGGGTTCACC
TACCTCCTGTTCCAAAAGAAGCTTCTTCCCTTCCGGTACGCCCGCCTGGC
GGCCAAGCTTTTTTTCTGGCCCACCATACCTATCACCATATTGAATCGAT
GGAGCAACTATTGGACAGCGATAGACAACACTCTCATCATGGGCGCGGCG
CCTCTCGCCGCTCTCGGTCACGTGGAGTCCTTGCGCGATCTAGGCGTGAC
GGGCGTCATAAATCTCTGCGACGAGTACGCAGGCCCTATCCGAATGTACC
AACGCCACGGCATCGAGCAGCTCTACCTCCCCACGGTGGACCACTTCGAA
CCTACCATCTCCGACCTCTACCGCGCTGTGGAGTTCATCTCCCTGCGCCA
CGCCAAGGGCGAGAAGTGCTTCGTGCACTGCAAAGCAGGGCATGGTCGCT
CCGCTGCAGTTGCCCTTTCTTGGCTGGCGACACAGAATCCAGGTGTAAGC
ATCCAACTCCTCAACCAGAGGCTGGGGGAAAAGCGCAAAGTCCGCAAGAC
GCTGTACAAACAAAATTGTGTCAAAGGCTTCCTGAGGGAGTGGGGCTTGC
AGTCCAAGGGCGTGAAGAAGGGAGAAGTCGAGATGGTGGAGAGGAAGGAG
GGGTCAGTGGAGGAGGAGGAGGGAGGAGGAGGAGGGAGGGGGAAGATTGC
GATGACAACGAGGAAAAAGGGGCAGCAGCAGGTCGTGAAGGGAAGGGGGG
ATGGAAGGACCGGGGCGGGAAGGAGGAGATGA
back to top
Synonyms
Publications