NO07G00450.1, NO07G00450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00450.1
Unique NameNO07G00450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1823
Alignment locationchr7:165873..168291 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:165873..168291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00450.1 vs.
Match: EWM27297.1 (phosphoribosylglycinamide synthetase family protein [Nannochloropsis gaditana])

HSP 1 Score: 539.7 bits (1389), Expect = 1.200e-149
Identity = 282/387 (72.87%), Postives = 315/387 (81.40%), Query Frame = 0 
Query:  185 RDGGWEGGSTPS-IPAAALKGNVPSLSLARRNKYLMGEAIRSAGLRAVKQIQTSDWTDIPPFLDTCRKPSLHPSLPPSLKVVLKPLSSAGSDGVFFASSEQEVREAFDTILSSKNVFGEKNTSVLVQEYLRGTEFVVDSISHEGVHRVTALWRYDKRPLNGAAFVYYGLRLFESEGGGEGGRGGGREVEWALARYAHRCLDALGIKNGFSHAEVMWVEGEGGMGGEPCLVEVGARPHGGEGTFVSLTEAAIGYNQLSVALDLIEDPHALTLLPILPPRLKAHAAEVCLVSRQAGRLVRHFLEERVNTDVLPSLKSVALHVNVGDCLKKTVDMLSSPGSAILCHPDPTVLEEDYEMLHAMDNLFLVEKEGEGGGE---EGTTTTEEGG 568
            R GG EGG   +  P + L GNV +LS ARRNKYLMGEAIRSAGLRA KQ+ T+ W ++PPFL+TCR+PS  PS P SLKVVLKPLSSAGSDGV FASS++E REAF+ IL+S NVFGE+NT+VL+QEYL+GTEFVVDSISHEG HRVTA+WRYDKRPLNGAAFVYYGLRL+E + G        RE++WALARYAH CLDALG++NGFSHAEVMW+EGE G  G PCLVEVGARPHGGEGTFVSLT  AIGYNQLSVALDLI DP AL  +P+LPP LKAHAAEVCLVSR++GRL+RHFL E V  + LPSLKSV LHV VGD LKKTVDMLSSPGSAIL H D  VLE DYE +H MD LFLVE EG G GE   EG+ TT  GG
Sbjct:   80 RGGGEEGGKEDTPFPPSTLGGNVFALSCARRNKYLMGEAIRSAGLRAAKQLMTASWEEVPPFLETCRRPSPSPSAPSSLKVVLKPLSSAGSDGVVFASSKEEAREAFERILASTNVFGERNTAVLIQEYLQGTEFVVDSISHEGEHRVTAIWRYDKRPLNGAAFVYYGLRLWEGKDG--------REMDWALARYAHACLDALGVRNGFSHAEVMWLEGEAGGAGGPCLVEVGARPHGGEGTFVSLTAEAIGYNQLSVALDLIRDPQALAGIPLLPPPLKAHAAEVCLVSRKSGRLLRHFLTEHVAGNTLPSLKSVELHVAVGDYLKKTVDMLSSPGSAILAHGDARVLERDYECIHEMD-LFLVE-EGGGEGEEEGEGSLTTGAGG 456
The following BLAST results are available for this feature:
BLAST of NO07G00450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27297.11.200e-14972.87phosphoribosylglycinamide synthetase family protei... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00450NO07G00450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00450.1NO07G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00450.1.cds1NO07G00450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00450.1.cds2NO07G00450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00450.1.cds3NO07G00450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00450.1 ID=NO07G00450.1|Name=NO07G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1823bp
ATGGCCAGGAGACGAGACGGGAGCCAGAAGCATAAGCAGTTTCCCCGCCC
CCGGGCAATGGCACCCCTCGGTCCGTTTGACCCCTTGCCGGAGCGCGGGC
ACCAGCAACACCACCAACCTCAAGTCACCGCTGCGCACGTGGCCGAGGAG
GAGGCCCTAACGAGCAGCAGACCAATTACTACCACCGCACACAAGAATGG
AAGAGCACAAGGCGCTTTGGTCATCGTCGACCCCATTTCCAGTGGGGCAA
TTCTGGCCTTACTGGGCCAGAAACGCGATTACCGTTTGATCGCAGTGTAC
AGCGAGGGGTTAGAAGCCGAGCTCAAGGCCTTGGTCCCAGCCGAGTGCAA
CAAAGCAGGGTTGCATTTTGACCACGTAGTCGAGCACACTGGTAACATCC
CTGCCACAGCCGCCAAGATACGGGCCCTCTTTTCCTCTTCCCCCTCCTAC
CCCTCCCTCCCTCCCCCTCTCGTCCTCAAGTCCCTCCTTGTCGGCTGCGA
ATCTGGTGTTGCCCTCTATGATGCGTTGATTGAAGAACTCCTTCTCTCAT
CCAGGGATGGAGGGTGGGAGGGAGGGAGTACTCCCTCCATCCCTGCCGCT
GCCTTGAAGGGAAACGTACCGTCCCTCTCCCTGGCCCGTCGTAACAAGTA
CCTGATGGGCGAGGCCATCCGTTCCGCCGGTCTCCGTGCGGTCAAACAAA
TTCAGACGTCCGATTGGACGGATATCCCTCCTTTCCTCGACACTTGCCGC
AAGCCTTCCCTCCATCCCTCCCTTCCTCCCTCCCTCAAGGTGGTGCTCAA
GCCCCTGTCGTCCGCGGGTTCGGATGGTGTTTTTTTTGCGTCTTCAGAAC
AGGAGGTAAGGGAAGCTTTCGACACTATTTTATCGTCTAAAAATGTATTT
GGGGAGAAGAATACAAGTGTGCTGGTACAGGAGTACCTGCGCGGGACGGA
GTTCGTAGTGGACTCCATTTCTCACGAGGGGGTCCATCGCGTAACGGCTT
TGTGGCGTTACGACAAACGGCCCTTGAACGGCGCGGCATTTGTTTACTAC
GGTTTACGTCTGTTTGAGAGTGAGGGCGGGGGGGAGGGAGGGAGGGGTGG
GGGGAGGGAGGTGGAGTGGGCCTTGGCGAGGTATGCTCACAGGTGCTTGG
ATGCCTTGGGGATTAAAAATGGGTTTAGTCATGCGGAGGTGATGTGGGTG
GAGGGGGAGGGAGGGATGGGAGGGGAGCCTTGTTTGGTGGAGGTGGGTGC
TCGGCCGCATGGAGGGGAAGGGACGTTTGTGTCGTTAACAGAGGCGGCCA
TAGGCTATAACCAGCTGTCGGTCGCGCTGGACCTGATTGAGGATCCGCAT
GCCCTCACCCTCCTTCCCATCCTCCCCCCGCGGCTCAAGGCACACGCGGC
GGAGGTGTGTTTGGTTTCACGGCAGGCCGGGCGGTTAGTGAGGCATTTTT
TGGAGGAGAGGGTAAATACGGACGTGCTGCCGTCGCTTAAGAGCGTGGCT
CTTCACGTCAACGTCGGCGACTGTCTCAAAAAGACAGTGGACATGCTCTC
TTCTCCTGGCTCGGCGATTTTATGCCATCCTGACCCGACGGTCCTCGAGG
AGGATTACGAGATGCTTCATGCGATGGACAACTTGTTTTTGGTTGAGAAA
GAGGGCGAAGGAGGGGGAGAGGAGGGGACGACGACGACGGAGGAAGGGGG
GAGTAGCGATTGTGGAGCGAGCTTGGAGGGGGAGGAGGAGGAGGAGGAAG
AGGGGGAGGAGGAGGAAGCGGTGCAGGCGCTGAAGGATGGGGAAAGATGA
GGAGGGGAGGGTGGGAGGGAGGG
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protein sequence of NO07G00450.1

>NO07G00450.1-protein ID=NO07G00450.1-protein|Name=NO07G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MARRRDGSQKHKQFPRPRAMAPLGPFDPLPERGHQQHHQPQVTAAHVAEE
EALTSSRPITTTAHKNGRAQGALVIVDPISSGAILALLGQKRDYRLIAVY
SEGLEAELKALVPAECNKAGLHFDHVVEHTGNIPATAAKIRALFSSSPSY
PSLPPPLVLKSLLVGCESGVALYDALIEELLLSSRDGGWEGGSTPSIPAA
ALKGNVPSLSLARRNKYLMGEAIRSAGLRAVKQIQTSDWTDIPPFLDTCR
KPSLHPSLPPSLKVVLKPLSSAGSDGVFFASSEQEVREAFDTILSSKNVF
GEKNTSVLVQEYLRGTEFVVDSISHEGVHRVTALWRYDKRPLNGAAFVYY
GLRLFESEGGGEGGRGGGREVEWALARYAHRCLDALGIKNGFSHAEVMWV
EGEGGMGGEPCLVEVGARPHGGEGTFVSLTEAAIGYNQLSVALDLIEDPH
ALTLLPILPPRLKAHAAEVCLVSRQAGRLVRHFLEERVNTDVLPSLKSVA
LHVNVGDCLKKTVDMLSSPGSAILCHPDPTVLEEDYEMLHAMDNLFLVEK
EGEGGGEEGTTTTEEGGSSDCGASLEGEEEEEEEGEEEEAVQALKDGER*
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mRNA from alignment at chr7:165873..168291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00450.1 ID=NO07G00450.1|Name=NO07G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2419bp|location=Sequence derived from alignment at chr7:165873..168291- (Nannochloropsis oceanica)
ATGGCCAGGAGACGAGACGGGAGCCAGAAGCATAAGCAGTTTCCCCGCCC
CCGGGTGCGTGCTCGTCGCCCACCCCTTTTCACACCTGCCTTGTGGAGCC
TTTCCCGACCTACAGCTTACGATATGATACTGCATCCGCTGGGATGAGTA
GAAGTTACAACAAAAGCAATGTCGTAGACAAGCTTGCATGCATCCTGCAA
CGTGGCTTGTTTGCCCATTAGTGCTGGGAGGCTCGAACTCCTTCCACTGG
CCAGCCACGACTTGCTGCTTGTGTGCGACATCCTTCTGCTTTCCAATGCG
CTGACTCCACTCTCCTCCTTTCCTTCTCATGCGAAGAACACAGAAATCAC
CAACAACATATATTCCAATACTCTACAGGCAATGGCACCCCTCGGTCCGT
TTGACCCCTTGCCGGAGCGCGGGCACCAGCAACACCACCAACCTCAAGTC
ACCGCTGCGCACGTGGCCGAGGAGGAGGCCCTAACGAGCAGCAGACCAAT
TACTACCACCGCACACAAGAATGGAAGAGCACAAGGCGCTTTGGTCATCG
TCGACCCCATTTCCAGTGGGGCAATTCTGGCCTTACTGGGCCAGAAACGC
GATTACCGTTTGATCGCAGTGTACAGCGAGGGGTTAGAAGCCGAGCTCAA
GGCCTTGGTCCCAGCCGAGTGCAACAAAGCAGGGTTGCATTTTGACCACG
TAGTCGAGCACACTGGTAACATCCCTGCCACAGCCGCCAAGATACGGGCC
CTCTTTTCCTCTTCCCCCTCCTACCCCTCCCTCCCTCCCCCTCTCGTCCT
CAAGTCCCTCCTTGTCGGCTGCGAATCTGGTGTTGCCCTCTATGATGCGT
TGATTGAAGAACTCCTTCTCTCATCCAGGGATGGAGGGTGGGAGGGAGGG
AGTACTCCCTCCATCCCTGCCGCTGCCTTGAAGGGAAACGTACCGTCCCT
CTCCCTGGCCCGTCGTAACAAGTACCTGATGGGCGAGGCCATCCGTTCCG
CCGGTCTCCGTGCGGTCAAACAAATTCAGACGTCCGATTGGACGGATATC
CCTCCTTTCCTCGACACTTGCCGCAAGCCTTCCCTCCATCCCTCCCTTCC
TCCCTCCCTCAAGGTGGTGCTCAAGCCCCTGTCGTCCGCGGGTTCGGATG
GTGTTTTTTTTGCGTCTTCAGAACAGGAGGTAAGGGAAGCTTTCGACACT
ATTTTATCGTCTAAAAATGTATTTGGGGAGAAGAATACAAGTGTGCTGGT
ACAGGAGTACCTGCGCGGGACGGAGTTCGTAGTGGACTCCATTTCTCACG
AGGGGGTCCATCGCGTAACGGCTTTGTGGCGTTACGACAAACGGCCCTTG
AACGGCGCGGCATTTGTTTACTACGGTTTACGTCTGTTTGAGAGTGAGGG
CGGGGGGGAGGGAGGGAGGGGTGGGGGGAGGGAGGTGGAGTGGGCCTTGG
CGAGGTATGCTCACAGGTGCTTGGATGCCTTGGGGATTAAAAATGGGTTT
AGTCATGCGGAGGTGATGTGGGTGGAGGGGGAGGGAGGGATGGGAGGGGA
GCCTTGTTTGGTGGAGGTGGGTGCTCGGCCGCATGGAGGGGAAGGGACGT
TTGTGTCGTTAACAGAGGCGGCCATAGGCTATAACCAGCTGTCGGTCGCG
CTGGACCTGATTGAGGATCCGCATGCCCTCACCCTCCTTCCCATCCTCCC
CCCGCGGCTCAAGGCACACGCGGCGGAGGTGTGTTTGGTTTCACGGCAGG
CCGGGCGGTTAGTGAGGCATTTTTTGGAGGAGAGGGTAAATACGGACGTG
CTGCCGTCGCTTAAGGTACGTGTGGGTGTGTTCATGTCAGGGTGGTAGAT
ATGTGTTTGTGTGTCAGGGGTGGAAGGTGCTGTCATGTTCTTCCTCCTCT
TCCTTGTTTCCTGACAGTCGCCCGTCTCACAGTCACCCGCGTTGTGTGTC
TGTGGTAAGATACTGATTCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTC
CCTCTCTCTCTCCGTCCCTCTCTCCCTCCTCCCCTCCCTCTCTCCCTCCC
TCCCTCCCTCCCTCCCTTCCTTCCTTCCTCCTCACAGAGCGTGGCTCTTC
ACGTCAACGTCGGCGACTGTCTCAAAAAGACAGTGGACATGCTCTCTTCT
CCTGGCTCGGCGATTTTATGCCATCCTGACCCGACGGTCCTCGAGGAGGA
TTACGAGATGCTTCATGCGATGGACAACTTGTTTTTGGTTGAGAAAGAGG
GCGAAGGAGGGGGAGAGGAGGGGACGACGACGACGGAGGAAGGGGGGAGT
AGCGATTGTGGAGCGAGCTTGGAGGGGGAGGAGGAGGAGGAGGAAGAGGG
GGAGGAGGAGGAAGCGGTGCAGGCGCTGAAGGATGGGGAAAGATGAGGAG
GGGAGGGTGGGAGGGAGGG
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Coding sequence (CDS) from alignment at chr7:165873..168291-

>NO07G00450.1 ID=NO07G00450.1|Name=NO07G00450.1|organism=Nannochloropsis oceanica|type=CDS|length=1800bp|location=Sequence derived from alignment at chr7:165873..168291- (Nannochloropsis oceanica)
ATGGCCAGGAGACGAGACGGGAGCCAGAAGCATAAGCAGTTTCCCCGCCC
CCGGGCAATGGCACCCCTCGGTCCGTTTGACCCCTTGCCGGAGCGCGGGC
ACCAGCAACACCACCAACCTCAAGTCACCGCTGCGCACGTGGCCGAGGAG
GAGGCCCTAACGAGCAGCAGACCAATTACTACCACCGCACACAAGAATGG
AAGAGCACAAGGCGCTTTGGTCATCGTCGACCCCATTTCCAGTGGGGCAA
TTCTGGCCTTACTGGGCCAGAAACGCGATTACCGTTTGATCGCAGTGTAC
AGCGAGGGGTTAGAAGCCGAGCTCAAGGCCTTGGTCCCAGCCGAGTGCAA
CAAAGCAGGGTTGCATTTTGACCACGTAGTCGAGCACACTGGTAACATCC
CTGCCACAGCCGCCAAGATACGGGCCCTCTTTTCCTCTTCCCCCTCCTAC
CCCTCCCTCCCTCCCCCTCTCGTCCTCAAGTCCCTCCTTGTCGGCTGCGA
ATCTGGTGTTGCCCTCTATGATGCGTTGATTGAAGAACTCCTTCTCTCAT
CCAGGGATGGAGGGTGGGAGGGAGGGAGTACTCCCTCCATCCCTGCCGCT
GCCTTGAAGGGAAACGTACCGTCCCTCTCCCTGGCCCGTCGTAACAAGTA
CCTGATGGGCGAGGCCATCCGTTCCGCCGGTCTCCGTGCGGTCAAACAAA
TTCAGACGTCCGATTGGACGGATATCCCTCCTTTCCTCGACACTTGCCGC
AAGCCTTCCCTCCATCCCTCCCTTCCTCCCTCCCTCAAGGTGGTGCTCAA
GCCCCTGTCGTCCGCGGGTTCGGATGGTGTTTTTTTTGCGTCTTCAGAAC
AGGAGGTAAGGGAAGCTTTCGACACTATTTTATCGTCTAAAAATGTATTT
GGGGAGAAGAATACAAGTGTGCTGGTACAGGAGTACCTGCGCGGGACGGA
GTTCGTAGTGGACTCCATTTCTCACGAGGGGGTCCATCGCGTAACGGCTT
TGTGGCGTTACGACAAACGGCCCTTGAACGGCGCGGCATTTGTTTACTAC
GGTTTACGTCTGTTTGAGAGTGAGGGCGGGGGGGAGGGAGGGAGGGGTGG
GGGGAGGGAGGTGGAGTGGGCCTTGGCGAGGTATGCTCACAGGTGCTTGG
ATGCCTTGGGGATTAAAAATGGGTTTAGTCATGCGGAGGTGATGTGGGTG
GAGGGGGAGGGAGGGATGGGAGGGGAGCCTTGTTTGGTGGAGGTGGGTGC
TCGGCCGCATGGAGGGGAAGGGACGTTTGTGTCGTTAACAGAGGCGGCCA
TAGGCTATAACCAGCTGTCGGTCGCGCTGGACCTGATTGAGGATCCGCAT
GCCCTCACCCTCCTTCCCATCCTCCCCCCGCGGCTCAAGGCACACGCGGC
GGAGGTGTGTTTGGTTTCACGGCAGGCCGGGCGGTTAGTGAGGCATTTTT
TGGAGGAGAGGGTAAATACGGACGTGCTGCCGTCGCTTAAGAGCGTGGCT
CTTCACGTCAACGTCGGCGACTGTCTCAAAAAGACAGTGGACATGCTCTC
TTCTCCTGGCTCGGCGATTTTATGCCATCCTGACCCGACGGTCCTCGAGG
AGGATTACGAGATGCTTCATGCGATGGACAACTTGTTTTTGGTTGAGAAA
GAGGGCGAAGGAGGGGGAGAGGAGGGGACGACGACGACGGAGGAAGGGGG
GAGTAGCGATTGTGGAGCGAGCTTGGAGGGGGAGGAGGAGGAGGAGGAAG
AGGGGGAGGAGGAGGAAGCGGTGCAGGCGCTGAAGGATGGGGAAAGATGA
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Synonyms
Publications