NO07G00430.1, NO07G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00430.1
Unique NameNO07G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1131
Alignment locationchr7:159882..161012 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:159882..161012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00430.1 vs.
Match: EWM27338.1 (Thioesterase superfamily [Nannochloropsis gaditana])

HSP 1 Score: 446.8 bits (1148), Expect = 6.600e-122
Identity = 234/372 (62.90%), Postives = 278/372 (74.73%), Query Frame = 0 
Query:    6 PRLFAAIKNHSKHADALEFTQLFHSINFAHTLRVSEAELVRYDIKEGLETTHAITPYLCRTDSRGTYLSVGVITALFDEISTAACILQDKTHRPGVSVSLVVEVLANVAPGRTLLLKTWADKLGKSLAFLRLDLRDAVTGQLVAVGKHCKMLPMAGVPFWDAAFAPFLYPFLKRPLMGLTRNHVAQGERVDWHGAASLYDYFPLDDLVLSGNGGGVGGVDDGRDGGKVEGKATTTASLHVQPRHCNGLFKMHGGALAVVAEDVAVRDVAARLQSSSSSSSSSFSSSSSFSSSSSSSSAEAATAPRARSLSMHYLQANSKMVDVAAW-VNDAPHIKG--KGGEEVPCMSLGLSSQIEVRRGGKLCNHGTILWQ 375
            P L AA+K  S+H DALEFTQLFHSINFAHTLRVS+A L RYD K+GLETTH IT YLCRTD  GTYLS GVITA+FDEISTAACILQD+THRPGVSV+L VEV+AN+ PGR+L LKTWADK+GKSLAFLRLDLRDA + QLVAVGKHCK LPMAGVPFWD AF P LYP +++ L+GLTR HVA GERV+ H A+S++D+FPLD+L L          D G +  +++    T ASLHV+PRHCNGLFKMHGGALAV AE++A+ DVAAR + S+S                         APRAR+LS+HYLQAN ++VD+AAW + DA    G  +GG++      GL +QIEVRRGGKLCN G+I+WQ
Sbjct:    5 PSLIAALKQSSRHEDALEFTQLFHSINFAHTLRVSDAVLERYDAKKGLETTHEITKYLCRTDEGGTYLSAGVITAIFDEISTAACILQDRTHRPGVSVALDVEVMANITPGRSLRLKTWADKIGKSLAFLRLDLRDAASDQLVAVGKHCKYLPMAGVPFWDMAFTPLLYPIVRKSLLGLTRRHVATGERVNTHDASSIFDHFPLDNLTLENES------DKGDERQRLQ---ATRASLHVKPRHCNGLFKMHGGALAVAAEEIALLDVAARKKESTSQ------------------------APRARALSLHYLQANDRVVDLAAWTLQDACEKSGGEEGGDD------GLLTQIEVRRGGKLCNSGSIIWQ 337
The following BLAST results are available for this feature:
BLAST of NO07G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27338.16.600e-12262.90Thioesterase superfamily [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00430NO07G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00430.1NO07G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00430.1.cds1NO07G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00430.1 ID=NO07G00430.1|Name=NO07G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
ATGAGGATCAAGTGTCCCAGGCTGTTCGCGGCTATCAAGAACCACTCGAA
GCATGCCGATGCCTTGGAGTTCACGCAGCTCTTCCACAGCATCAATTTTG
CCCACACTCTGCGCGTCTCAGAAGCGGAGCTCGTGCGGTACGACATCAAG
GAGGGCTTGGAAACCACCCACGCTATCACACCTTACCTCTGTCGAACAGA
CAGTCGCGGCACCTACCTCTCTGTCGGAGTGATCACGGCCTTATTCGACG
AAATCTCCACGGCCGCATGCATCTTGCAAGATAAGACACATCGTCCCGGT
GTCAGTGTCAGCCTTGTCGTCGAAGTGCTTGCAAACGTCGCACCGGGCCG
CACCCTCCTCCTCAAAACATGGGCCGACAAGCTAGGGAAGAGCTTGGCCT
TTCTCCGCCTTGACTTGCGTGATGCTGTCACAGGGCAACTGGTTGCAGTG
GGGAAACATTGCAAGATGTTACCGATGGCAGGGGTACCGTTTTGGGACGC
TGCCTTTGCGCCCTTTCTCTATCCCTTCCTCAAGCGGCCATTGATGGGGT
TGACAAGAAATCATGTAGCCCAGGGAGAGAGGGTGGATTGGCATGGGGCG
GCGTCTTTGTACGATTATTTTCCGTTGGATGATTTGGTGTTGAGTGGAAA
TGGTGGTGGAGTGGGAGGGGTTGATGACGGAAGGGATGGAGGGAAGGTTG
AAGGGAAAGCGACGACGACGGCAAGTCTGCACGTCCAACCGCGGCATTGC
AATGGTCTCTTTAAAATGCACGGTGGGGCCTTGGCAGTCGTGGCAGAAGA
TGTCGCTGTGCGGGACGTGGCGGCGCGATTACAATCCTCCTCCTCCTCCT
CCTCCTCCTCCTTCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCT
TCCTCGGCAGAGGCTGCGACTGCGCCACGGGCACGTTCGCTGAGCATGCA
TTATTTACAAGCCAATAGTAAGATGGTGGACGTGGCGGCCTGGGTGAATG
ACGCCCCCCATATTAAGGGAAAGGGAGGAGAGGAAGTACCGTGTATGTCC
TTGGGGCTGTCGTCGCAGATAGAGGTGCGGCGTGGGGGTAAACTCTGCAA
CCATGGCACCATTTTGTGGCAGGAGAAGTGA
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protein sequence of NO07G00430.1

>NO07G00430.1-protein ID=NO07G00430.1-protein|Name=NO07G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MRIKCPRLFAAIKNHSKHADALEFTQLFHSINFAHTLRVSEAELVRYDIK
EGLETTHAITPYLCRTDSRGTYLSVGVITALFDEISTAACILQDKTHRPG
VSVSLVVEVLANVAPGRTLLLKTWADKLGKSLAFLRLDLRDAVTGQLVAV
GKHCKMLPMAGVPFWDAAFAPFLYPFLKRPLMGLTRNHVAQGERVDWHGA
ASLYDYFPLDDLVLSGNGGGVGGVDDGRDGGKVEGKATTTASLHVQPRHC
NGLFKMHGGALAVVAEDVAVRDVAARLQSSSSSSSSSFSSSSSFSSSSSS
SSAEAATAPRARSLSMHYLQANSKMVDVAAWVNDAPHIKGKGGEEVPCMS
LGLSSQIEVRRGGKLCNHGTILWQEK*
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mRNA from alignment at chr7:159882..161012-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00430.1 ID=NO07G00430.1|Name=NO07G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp|location=Sequence derived from alignment at chr7:159882..161012- (Nannochloropsis oceanica)
ATGAGGATCAAGTGTCCCAGGCTGTTCGCGGCTATCAAGAACCACTCGAA
GCATGCCGATGCCTTGGAGTTCACGCAGCTCTTCCACAGCATCAATTTTG
CCCACACTCTGCGCGTCTCAGAAGCGGAGCTCGTGCGGTACGACATCAAG
GAGGGCTTGGAAACCACCCACGCTATCACACCTTACCTCTGTCGAACAGA
CAGTCGCGGCACCTACCTCTCTGTCGGAGTGATCACGGCCTTATTCGACG
AAATCTCCACGGCCGCATGCATCTTGCAAGATAAGACACATCGTCCCGGT
GTCAGTGTCAGCCTTGTCGTCGAAGTGCTTGCAAACGTCGCACCGGGCCG
CACCCTCCTCCTCAAAACATGGGCCGACAAGCTAGGGAAGAGCTTGGCCT
TTCTCCGCCTTGACTTGCGTGATGCTGTCACAGGGCAACTGGTTGCAGTG
GGGAAACATTGCAAGATGTTACCGATGGCAGGGGTACCGTTTTGGGACGC
TGCCTTTGCGCCCTTTCTCTATCCCTTCCTCAAGCGGCCATTGATGGGGT
TGACAAGAAATCATGTAGCCCAGGGAGAGAGGGTGGATTGGCATGGGGCG
GCGTCTTTGTACGATTATTTTCCGTTGGATGATTTGGTGTTGAGTGGAAA
TGGTGGTGGAGTGGGAGGGGTTGATGACGGAAGGGATGGAGGGAAGGTTG
AAGGGAAAGCGACGACGACGGCAAGTCTGCACGTCCAACCGCGGCATTGC
AATGGTCTCTTTAAAATGCACGGTGGGGCCTTGGCAGTCGTGGCAGAAGA
TGTCGCTGTGCGGGACGTGGCGGCGCGATTACAATCCTCCTCCTCCTCCT
CCTCCTCCTCCTTCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCT
TCCTCGGCAGAGGCTGCGACTGCGCCACGGGCACGTTCGCTGAGCATGCA
TTATTTACAAGCCAATAGTAAGATGGTGGACGTGGCGGCCTGGGTGAATG
ACGCCCCCCATATTAAGGGAAAGGGAGGAGAGGAAGTACCGTGTATGTCC
TTGGGGCTGTCGTCGCAGATAGAGGTGCGGCGTGGGGGTAAACTCTGCAA
CCATGGCACCATTTTGTGGCAGGAGAAGTGA
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Coding sequence (CDS) from alignment at chr7:159882..161012-

>NO07G00430.1 ID=NO07G00430.1|Name=NO07G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr7:159882..161012- (Nannochloropsis oceanica)
ATGAGGATCAAGTGTCCCAGGCTGTTCGCGGCTATCAAGAACCACTCGAA
GCATGCCGATGCCTTGGAGTTCACGCAGCTCTTCCACAGCATCAATTTTG
CCCACACTCTGCGCGTCTCAGAAGCGGAGCTCGTGCGGTACGACATCAAG
GAGGGCTTGGAAACCACCCACGCTATCACACCTTACCTCTGTCGAACAGA
CAGTCGCGGCACCTACCTCTCTGTCGGAGTGATCACGGCCTTATTCGACG
AAATCTCCACGGCCGCATGCATCTTGCAAGATAAGACACATCGTCCCGGT
GTCAGTGTCAGCCTTGTCGTCGAAGTGCTTGCAAACGTCGCACCGGGCCG
CACCCTCCTCCTCAAAACATGGGCCGACAAGCTAGGGAAGAGCTTGGCCT
TTCTCCGCCTTGACTTGCGTGATGCTGTCACAGGGCAACTGGTTGCAGTG
GGGAAACATTGCAAGATGTTACCGATGGCAGGGGTACCGTTTTGGGACGC
TGCCTTTGCGCCCTTTCTCTATCCCTTCCTCAAGCGGCCATTGATGGGGT
TGACAAGAAATCATGTAGCCCAGGGAGAGAGGGTGGATTGGCATGGGGCG
GCGTCTTTGTACGATTATTTTCCGTTGGATGATTTGGTGTTGAGTGGAAA
TGGTGGTGGAGTGGGAGGGGTTGATGACGGAAGGGATGGAGGGAAGGTTG
AAGGGAAAGCGACGACGACGGCAAGTCTGCACGTCCAACCGCGGCATTGC
AATGGTCTCTTTAAAATGCACGGTGGGGCCTTGGCAGTCGTGGCAGAAGA
TGTCGCTGTGCGGGACGTGGCGGCGCGATTACAATCCTCCTCCTCCTCCT
CCTCCTCCTCCTTCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCT
TCCTCGGCAGAGGCTGCGACTGCGCCACGGGCACGTTCGCTGAGCATGCA
TTATTTACAAGCCAATAGTAAGATGGTGGACGTGGCGGCCTGGGTGAATG
ACGCCCCCCATATTAAGGGAAAGGGAGGAGAGGAAGTACCGTGTATGTCC
TTGGGGCTGTCGTCGCAGATAGAGGTGCGGCGTGGGGGTAAACTCTGCAA
CCATGGCACCATTTTGTGGCAGGAGAAGTGA
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Synonyms
Publications