NO07G00360.1, NO07G00360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00360.1
Unique NameNO07G00360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1795
Alignment locationchr7:139271..141065 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:139271..141065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00360.1 vs.
Match: EWM27352.1 (protein of unknown function DUF4203 [Nannochloropsis gaditana])

HSP 1 Score: 309.7 bits (792), Expect = 1.100e-80
Identity = 172/283 (60.78%), Postives = 211/283 (74.56%), Query Frame = 0 
Query:   52 RRVPRPTSLLFQILLFLLSIVYTYAQQSKSDRLSPSSEVLGGIILTLGLILAFGGKNVMSLYCAAAGFLFGFIISYVVLERIQVDHDLGPNKDLIELVSALLMGIIGAALGLCLSRFAAFLVAVLFGLVVTVAILTIPGT---RSRLPSWALALIVIAISIVIYALLETWLVVLFTALVGSFAFACGLDGILKTGLNEELSMVLTQSTESAPIPFEGTEDMLPILYAFCACFVLGSITQVCVSRRAGNGSDGEEARKMRASRRDRAFEEEEEKMERGAVAHVY 332
            RR P    ++F +LL LL+  +  AQ   S  LSPS+EV+GGI + LGLILAFGGK++M LYCAAAGFLFG +  ++ L R+Q  +D+GPN++LIEL+  L+ G+IGAALGLCLS+FA FLVAVLFGLVVT+A+L IPGT   R+RLP W LALIV+A+S+V Y LLE++LVV FTALVGS AFA GLD ILKTG NEEL+  LT    S   PF+GTEDMLPI+YAF  C VLG ITQVCVSR+    +DGEE RK +  RR   FEEE++    GAVA +Y
Sbjct:   57 RRAPFSFDVVFNLLLCLLACSFALAQDFSSGSLSPSAEVMGGITMGLGLILAFGGKSIMRLYCAAAGFLFGMVACHLALLRVQASYDMGPNRELIELICVLIAGVIGAALGLCLSQFAVFLVAVLFGLVVTMALLAIPGTEQFRTRLPPWGLALIVVALSVVFYFLLESYLVVFFTALVGSVAFANGLDAILKTGFNEELTQALTSKDPSDAEPFQGTEDMLPIVYAFFGCLVLGMITQVCVSRKMRRQADGEEDRKAQQRRRGMMFEEEKDMESGGAVARLY 339
The following BLAST results are available for this feature:
BLAST of NO07G00360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27352.11.100e-8060.78protein of unknown function DUF4203 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00360NO07G00360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00360.1NO07G00360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00360.1.cds1NO07G00360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00360.1 ID=NO07G00360.1|Name=NO07G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp
TCGTTATGCTTCAGACCATAATGCTCCTCCTTGTCAGGTTTGTGCTTGCA
GAGAAGGACAACCTATTCAAGCGCATATATCCTGTCAGGTTCGACTCTCA
GAGCCGGTGGTTGGTGGCTTTCGAGAGAACAGAGTTATCCAAGCCAGAAG
CGGTTGTTCTGATGCCCGATGCCTTCAAACAGAGGCAAACTCAACAGCAG
TGTGAAGCGCACTCATCCCCCCCTTCATCCTTTCTACACACAGCACACAG
GCCTCCTCCAAGCTCCCGCTACCCTTCGAACACAAATTCTGACCCTCGTA
ATGGCTTCCAAGTTGGCACCTCGACGTGTTCCTCGGCCGACCAGCTTGCT
TTTCCAGATCCTCCTTTTCCTCCTCTCCATCGTCTATACCTATGCCCAAC
AGTCCAAGAGCGACAGACTCTCCCCATCCTCAGAAGTGTTGGGGGGAATC
ATCCTTACACTGGGCCTCATTCTTGCCTTTGGTGGGAAGAACGTCATGTC
TCTTTATTGTGCTGCAGCCGGGTTTTTGTTTGGATTTATCATCTCGTACG
TAGTTCTTGAGAGGATTCAAGTCGATCATGACCTGGGGCCGAACAAGGAC
CTCATCGAGCTTGTCAGTGCCTTGCTCATGGGCATCATTGGAGCGGCCCT
AGGGTTATGTTTATCGCGATTCGCTGCATTTCTTGTGGCGGTATTGTTTG
GCCTGGTGGTGACTGTAGCAATCCTCACCATTCCTGGCACTCGTTCCCGC
CTGCCGTCTTGGGCTTTGGCTCTCATTGTCATCGCCATTTCTATCGTCAT
ATATGCCCTTCTCGAGACGTGGCTCGTCGTGCTTTTCACGGCTTTGGTCG
GTTCCTTTGCGTTTGCCTGTGGGTTGGACGGGATCTTGAAGACGGGGCTC
AACGAGGAGCTATCGATGGTGTTGACTCAGAGCACGGAGTCTGCCCCGAT
TCCATTTGAGGGGACGGAGGACATGCTCCCTATTCTATACGCTTTTTGCG
CTTGTTTTGTGCTGGGGAGCATCACGCAGGTGTGTGTAAGCAGGAGGGCG
GGAAACGGGAGTGATGGGGAGGAGGCGAGAAAGATGAGGGCAAGCAGGAG
GGACCGGGCTTTTGAGGAGGAGGAGGAGAAGATGGAACGTGGCGCAGTGG
CACATGTGTACTAAGAGAAAAGTTGGTGGGGAGATGTGGAGAAGAGAGGG
AGGGAAAGAGGGAGGAGTTGGAGGTATGGGTTTGCATACATAAATATACA
TTGATGTGACAGCAGACGTAGCAGCAGCGGCAGGAGCAGGAGCAGCAGTA
GGAGCAAGAGCAGGAGCAGCAGTAGGAGCAAGAGCAGCAGTAGCAGCAGC
ATAATGATGAAACTTGGAGCGACTGAACCGCACCACGCCCAGCAGCGGGA
GCAGCACAGGGGCAGGAACAACTCAGAGGGGACGTAGAATGTATTACGGG
CATAAGCCACCGCCTTATTGGAACACAAGGGAGAGAAGCCGCCTCAGCTC
TGTGTTATGAAAGAGGAAAAGGGAGCAGTATGTGAATGTGAGAACACGTG
GAATAAAAGCGTTGATAAAGGAATGGAAAGGTTCACGTGCTGACTGTAGC
GGTCGACTAGCCTCATCTACATGGGCAAGGGAAAATGAAATTTGAACAGC
GCAGGTTTGTTCGATATTGTTTGTTCGAGAAGGGAAAAGAACGAGGGAGG
TTTCATAGCGTATCACACACGCGTAAAGAGAGAAAAAGAGAAAAGAAGAA
CGACCTCCATGGTAAGCCCCCCAAATGAAGGCCAGAAACATTATC
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protein sequence of NO07G00360.1

>NO07G00360.1-protein ID=NO07G00360.1-protein|Name=NO07G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MPSNRGKLNSSVKRTHPPLHPFYTQHTGLLQAPATLRTQILTLVMASKLA
PRRVPRPTSLLFQILLFLLSIVYTYAQQSKSDRLSPSSEVLGGIILTLGL
ILAFGGKNVMSLYCAAAGFLFGFIISYVVLERIQVDHDLGPNKDLIELVS
ALLMGIIGAALGLCLSRFAAFLVAVLFGLVVTVAILTIPGTRSRLPSWAL
ALIVIAISIVIYALLETWLVVLFTALVGSFAFACGLDGILKTGLNEELSM
VLTQSTESAPIPFEGTEDMLPILYAFCACFVLGSITQVCVSRRAGNGSDG
EEARKMRASRRDRAFEEEEEKMERGAVAHVY*
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mRNA from alignment at chr7:139271..141065+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00360.1 ID=NO07G00360.1|Name=NO07G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at chr7:139271..141065+ (Nannochloropsis oceanica)
TCGTTATGCTTCAGACCATAATGCTCCTCCTTGTCAGGTTTGTGCTTGCA
GAGAAGGACAACCTATTCAAGCGCATATATCCTGTCAGGTTCGACTCTCA
GAGCCGGTGGTTGGTGGCTTTCGAGAGAACAGAGTTATCCAAGCCAGAAG
CGGTTGTTCTGATGCCCGATGCCTTCAAACAGAGGCAAACTCAACAGCAG
TGTGAAGCGCACTCATCCCCCCCTTCATCCTTTCTACACACAGCACACAG
GCCTCCTCCAAGCTCCCGCTACCCTTCGAACACAAATTCTGACCCTCGTA
ATGGCTTCCAAGTTGGCACCTCGACGTGTTCCTCGGCCGACCAGCTTGCT
TTTCCAGATCCTCCTTTTCCTCCTCTCCATCGTCTATACCTATGCCCAAC
AGTCCAAGAGCGACAGACTCTCCCCATCCTCAGAAGTGTTGGGGGGAATC
ATCCTTACACTGGGCCTCATTCTTGCCTTTGGTGGGAAGAACGTCATGTC
TCTTTATTGTGCTGCAGCCGGGTTTTTGTTTGGATTTATCATCTCGTACG
TAGTTCTTGAGAGGATTCAAGTCGATCATGACCTGGGGCCGAACAAGGAC
CTCATCGAGCTTGTCAGTGCCTTGCTCATGGGCATCATTGGAGCGGCCCT
AGGGTTATGTTTATCGCGATTCGCTGCATTTCTTGTGGCGGTATTGTTTG
GCCTGGTGGTGACTGTAGCAATCCTCACCATTCCTGGCACTCGTTCCCGC
CTGCCGTCTTGGGCTTTGGCTCTCATTGTCATCGCCATTTCTATCGTCAT
ATATGCCCTTCTCGAGACGTGGCTCGTCGTGCTTTTCACGGCTTTGGTCG
GTTCCTTTGCGTTTGCCTGTGGGTTGGACGGGATCTTGAAGACGGGGCTC
AACGAGGAGCTATCGATGGTGTTGACTCAGAGCACGGAGTCTGCCCCGAT
TCCATTTGAGGGGACGGAGGACATGCTCCCTATTCTATACGCTTTTTGCG
CTTGTTTTGTGCTGGGGAGCATCACGCAGGTGTGTGTAAGCAGGAGGGCG
GGAAACGGGAGTGATGGGGAGGAGGCGAGAAAGATGAGGGCAAGCAGGAG
GGACCGGGCTTTTGAGGAGGAGGAGGAGAAGATGGAACGTGGCGCAGTGG
CACATGTGTACTAAGAGAAAAGTTGGTGGGGAGATGTGGAGAAGAGAGGG
AGGGAAAGAGGGAGGAGTTGGAGGTATGGGTTTGCATACATAAATATACA
TTGATGTGACAGCAGACGTAGCAGCAGCGGCAGGAGCAGGAGCAGCAGTA
GGAGCAAGAGCAGGAGCAGCAGTAGGAGCAAGAGCAGCAGTAGCAGCAGC
ATAATGATGAAACTTGGAGCGACTGAACCGCACCACGCCCAGCAGCGGGA
GCAGCACAGGGGCAGGAACAACTCAGAGGGGACGTAGAATGTATTACGGG
CATAAGCCACCGCCTTATTGGAACACAAGGGAGAGAAGCCGCCTCAGCTC
TGTGTTATGAAAGAGGAAAAGGGAGCAGTATGTGAATGTGAGAACACGTG
GAATAAAAGCGTTGATAAAGGAATGGAAAGGTTCACGTGCTGACTGTAGC
GGTCGACTAGCCTCATCTACATGGGCAAGGGAAAATGAAATTTGAACAGC
GCAGGTTTGTTCGATATTGTTTGTTCGAGAAGGGAAAAGAACGAGGGAGG
TTTCATAGCGTATCACACACGCGTAAAGAGAGAAAAAGAGAAAAGAAGAA
CGACCTCCATGGTAAGCCCCCCAAATGAAGGCCAGAAACATTATC
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Coding sequence (CDS) from alignment at chr7:139271..141065+

>NO07G00360.1 ID=NO07G00360.1|Name=NO07G00360.1|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at chr7:139271..141065+ (Nannochloropsis oceanica)
ATGCCTTCAAACAGAGGCAAACTCAACAGCAGTGTGAAGCGCACTCATCC
CCCCCTTCATCCTTTCTACACACAGCACACAGGCCTCCTCCAAGCTCCCG
CTACCCTTCGAACACAAATTCTGACCCTCGTAATGGCTTCCAAGTTGGCA
CCTCGACGTGTTCCTCGGCCGACCAGCTTGCTTTTCCAGATCCTCCTTTT
CCTCCTCTCCATCGTCTATACCTATGCCCAACAGTCCAAGAGCGACAGAC
TCTCCCCATCCTCAGAAGTGTTGGGGGGAATCATCCTTACACTGGGCCTC
ATTCTTGCCTTTGGTGGGAAGAACGTCATGTCTCTTTATTGTGCTGCAGC
CGGGTTTTTGTTTGGATTTATCATCTCGTACGTAGTTCTTGAGAGGATTC
AAGTCGATCATGACCTGGGGCCGAACAAGGACCTCATCGAGCTTGTCAGT
GCCTTGCTCATGGGCATCATTGGAGCGGCCCTAGGGTTATGTTTATCGCG
ATTCGCTGCATTTCTTGTGGCGGTATTGTTTGGCCTGGTGGTGACTGTAG
CAATCCTCACCATTCCTGGCACTCGTTCCCGCCTGCCGTCTTGGGCTTTG
GCTCTCATTGTCATCGCCATTTCTATCGTCATATATGCCCTTCTCGAGAC
GTGGCTCGTCGTGCTTTTCACGGCTTTGGTCGGTTCCTTTGCGTTTGCCT
GTGGGTTGGACGGGATCTTGAAGACGGGGCTCAACGAGGAGCTATCGATG
GTGTTGACTCAGAGCACGGAGTCTGCCCCGATTCCATTTGAGGGGACGGA
GGACATGCTCCCTATTCTATACGCTTTTTGCGCTTGTTTTGTGCTGGGGA
GCATCACGCAGGTGTGTGTAAGCAGGAGGGCGGGAAACGGGAGTGATGGG
GAGGAGGCGAGAAAGATGAGGGCAAGCAGGAGGGACCGGGCTTTTGAGGA
GGAGGAGGAGAAGATGGAACGTGGCGCAGTGGCACATGTGTACTAA
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Synonyms
Publications