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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:91518..95190 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00210.1 vs.
Match: CEM32846.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 84.0 bits (206), Expect = 1.700e-12 Identity = 81/316 (25.63%), Postives = 143/316 (45.25%), Query Frame = 0
Query: 196 AVATALVAMSALMYSLEAVNVKLMGKDVGYWTISVWRGGVGAVC---CLTSYFATPREEGTNPLGQAANRPMLALRGVTGAAAVISSFAALTSMDMGDATCIFSTAPLWTALIAVSVRKGTWSHFDTLAAICCTVGVLLVLKPSPLSSTPSLPPSPLPTGASTPILRNTPFGILMALVSAVTTAAFTVLTRYVQHENTSVVSGYVMVACILLAFPGMIYEQLTRENLTLS-------HGWVSTLIQLFLTGVFSYAALMSKTYAMQITRKIGVIVMRYLSIFFAFGFEAFLLHHEVDGLALLGAAVIVAGCVLSVL 502
A AM+A++ ++ + VK+ + + RG VC CL R +PLG R +L +R V G+ A+ F ++ + +GDA+ T P++TAL+A V W+ TLAA+C GV+ + +P L S+ P G++TP++ + +L+AL A+ TR + ++VV + I LA G+I ++++ S +GW++ + GV + A +QI + + L + FA+ + +L +D +L GA +IVA L ++
Sbjct: 106 AAGLVFCAMAAVLRAVSSTLVKVTAGKTSVLYVLLARGVTEMVCGIVCLAVQMVVERR-WISPLGPKEIRHLLVVRAVCGSLAIGFFFFCISQLPIGDASAASFTTPIFTALLASCVLGEPWTTVCTLAAMCSLAGVIFIAQPDVLFHHGSIQPHESIVGSATPVVASRVVAVLLALTGALAGGTAYTATRRIGPRVSAVVLVLWISTMITLASTGLIATLAPNDSISSSGDDGFSLYGWLAAV------GVIGFGAHWCLNRGLQIGQAGPGAFLINLDVAFAYILQVCVLGRALDQWSLYGALLIVAAASLMIV 414
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00210.1 ID=NO07G00210.1|Name=NO07G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2334bp AAAGGAGCCAACTGCTGCTGCCTATCACGATCATATATACACGACGCACC CCTTGCATACCAGCTGCGGCATCCCCCGGAAAATTCGTCGGGTCGACGAT CTCGTTGTCGTCAGGCTATAAGATCTAGGTACCACAGGTCACGCTATTTG CAGTCCCTCTCCCTTTCACCATCAGGCATCGCATGCCCGACAAACCACGA CGTGCATAAGGGCGCGGACCAAAACCAGAATATGGTCATCAATGCGCTCC CTTCTCCCTCATCTAGAGGACAGAATATGCAGGAAGAGGAGTCTCTACCA CAACCACAGTTACCACCACCACCACTAACATCGGAAGATGGAGAGGGAGG AGAGAATGAAGTGGCATTGACGCTGTCCAGCTCCAACCGCAACCAACTCT ACAGCCATTGTGATGACGAGGACGATGAAGGCGTGATGGCCGTTCCAGTG TGCTACCGTCCTTTCCCGCAGCATAGGCAGGCTAGCATGGATGTGGAGGG AGGGAGAGGTTACTCCACGACCTTTGGCGCGGAGGAAGACATGCACATGC GCACCCTCCGCCTCAGCCAGCAGCTGTGCCTAGATGATGGCGACAGTAGC AGCCATGACAAGGCGGCGGCAATGGCAACCATGACAGCCACCGGGGCCGG AACCTTAACCCACACCGATAGTAAGGGCAAGTCACTGCAATCGCCCTTCT CCCTCCGCACTTCTGAAACCATCCCCTCCTCCTCCCCTTCCTCTGAGCCC CTTGGGCGGTCTGTTGTCGTACCTGGCTGGGGAGGCAAATTAATTTGTGG CATGGACGAGCCCACAGCAGTAGCAACAGCGCTGGTGGCCATGTCTGCCT TGATGTACAGCTTGGAAGCCGTCAATGTCAAACTTATGGGGAAGGACGTG GGCTACTGGACCATCAGCGTGTGGCGCGGAGGGGTAGGCGCGGTGTGTTG CCTCACGTCTTACTTCGCCACGCCCAGAGAGGAGGGGACGAACCCCCTGG GTCAAGCTGCCAACAGACCGATGCTCGCCCTTCGGGGAGTCACGGGCGCC GCCGCGGTCATCTCCAGCTTTGCCGCTCTGACGAGCATGGACATGGGAGA TGCCACCTGCATATTTTCCACGGCCCCGCTGTGGACGGCGCTGATAGCCG TGAGCGTGAGAAAGGGCACCTGGTCTCACTTCGACACCCTGGCTGCAATC TGCTGCACGGTCGGTGTCCTCCTCGTTCTCAAGCCCAGCCCCCTCTCCTC CACACCCTCCCTCCCTCCCTCCCCCCTCCCGACTGGGGCCTCGACCCCGA TATTGCGGAACACGCCGTTCGGCATCCTCATGGCTCTGGTCTCCGCAGTC ACCACAGCCGCCTTCACCGTCCTGACCCGCTACGTGCAGCACGAGAACAC CTCTGTGGTCTCGGGCTACGTGATGGTGGCTTGCATTCTCCTCGCCTTCC CCGGCATGATCTACGAGCAACTCACGCGGGAAAATCTGACACTGTCTCAC GGCTGGGTTTCCACCCTGATTCAACTCTTCCTCACCGGCGTCTTCTCCTA CGCGGCCCTCATGTCCAAAACCTATGCCATGCAAATCACCCGGAAAATCG GCGTGATCGTCATGCGCTACCTCTCCATCTTCTTCGCCTTCGGTTTTGAG GCTTTCCTCCTCCACCATGAGGTAGATGGCCTAGCCCTCCTAGGTGCCGC CGTCATTGTGGCAGGCTGCGTCCTCTCTGTACTGACGCAGGGTGCGAAAG GAGGTGCTGTTGATTCAACCGTTGTAGATGACACTCTTTCCCTTTCCGGC TCCCTGGCCAAAGCCCAGGCGGCTGCTGCTACTGCTGCTACTGCTGCTGC TACTGCTGCTGCTGGAGCGGCGGCGGGGAGGGGGTCGAGAGGAAGGAAGA ACATCGTGACGGCGCAGGCGTGATGGGGAAGGAAGAGCGTGATGGAGAAG AGCGGGGAAAACGGCGCAGGGGACAAGGAAGAGGCCACGTCACGAAGGGA GGGAAGAGACGAAAAAAGGCACGAGAGTGTGGGGGGGGTGATGAGGCAGG AGGAAGCGACAGAGGGAGCGAGGGACCGCAAGGGATTGAACATTTTCTGT ATGGATGCAGGTGAGGTGCGCGTGAGTGAATAGAAAAAATAGAGGAAGCC CAATTTTGTGGTGGTTTATGCCTGTAGGTGCAGAAGAGCGTGTATAAATC ATGTGGGGAGTGAGTGTGTGTGTTTCCAAGCATAACAAGGCCGGGGGAAA AGGCTAGAGACAGAGGCCGAGGTTGGATGAATCAAATCCAAATAACAGAA GATTCAGCGATTTTCGCCACGCGAATATCAGGGG back to topprotein sequence of NO07G00210.1 >NO07G00210.1-protein ID=NO07G00210.1-protein|Name=NO07G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=564bp MVINALPSPSSRGQNMQEEESLPQPQLPPPPLTSEDGEGGENEVALTLSS SNRNQLYSHCDDEDDEGVMAVPVCYRPFPQHRQASMDVEGGRGYSTTFGA EEDMHMRTLRLSQQLCLDDGDSSSHDKAAAMATMTATGAGTLTHTDSKGK SLQSPFSLRTSETIPSSSPSSEPLGRSVVVPGWGGKLICGMDEPTAVATA LVAMSALMYSLEAVNVKLMGKDVGYWTISVWRGGVGAVCCLTSYFATPRE EGTNPLGQAANRPMLALRGVTGAAAVISSFAALTSMDMGDATCIFSTAPL WTALIAVSVRKGTWSHFDTLAAICCTVGVLLVLKPSPLSSTPSLPPSPLP TGASTPILRNTPFGILMALVSAVTTAAFTVLTRYVQHENTSVVSGYVMVA CILLAFPGMIYEQLTRENLTLSHGWVSTLIQLFLTGVFSYAALMSKTYAM QITRKIGVIVMRYLSIFFAFGFEAFLLHHEVDGLALLGAAVIVAGCVLSV LTQGAKGGAVDSTVVDDTLSLSGSLAKAQAAAATAATAAATAAAGAAAGR GSRGRKNIVTAQA* back to topmRNA from alignment at chr7:91518..95190- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00210.1 ID=NO07G00210.1|Name=NO07G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=3673bp|location=Sequence derived from alignment at chr7:91518..95190- (Nannochloropsis oceanica) AAAGGAGCCAACTGCTGCTGCCTATCACGATCATATATACACGACGCACC
CCTTGCATACCAGCTGCGGCATCCCCCGGAAAATTCGTCGGGTCGACGAT
CTCGTTGTCGTCAGGCTATAAGATCTAGGTACCACAGGTCACGCTATTTG
CAGTCCCTCTCCCTTTCACCATCAGGCATCGCATGCCCGACAAACCACGA
CGTGCATAAGGGCGCGGACCAAAACCAGAATATGGTCATCAATGCGCTCC
CTTCTCCCTCATCTAGAGGACAGAATATGCAGGAAGAGGAGTCTCTACCA
CAACCACAGTTACCACCACCACCACTAACATCGGAAGATGGAGAGGGAGG
AGAGAATGAAGTGGCATTGACGCTGTCCAGCTCCAACCGCAACCAACTCT
ACAGCCATTGTGATGACGAGGACGATGAAGGCGTGATGGCCGTTCCAGTG
TGCTACCGTCCTTTCCCGCAGCATAGGCAGGCTAGCATGGATGTGGAGGG
AGGGAGAGGTTACTCCACGACCTTTGGCGCGGAGGAAGACATGCACATGC
GCACCCTCCGCCTCAGCCAGCAGCTGTGCCTAGATGATGGCGACAGTAGC
AGCCATGACAAGGCGGCGGCAATGGTACGCAAGTCTTTATGGTTTTGACT
TTTTGCTGTCACGAAACAAGTAGATAACAAAACAGTGCGCCTCATTGATC
TTTACATCCCTCCCTCCCTCCCTCCCTCCTTCCTTCCCTCATTCTTCTCC
TCTGTGGCTCACTCTACAGGCAACCATGACAGCCACCGGGGCCGGAACCT
TAACCCACACCGATAGTAAGGGCAAGTCACTGCAATCGCCCTTCTCCCTC
CGCACTTCTGAAACCATCCCCTCCTCCTCCCCTTCCTCTGAGCCCCTTGG
GCGGTCTGTTGTCGTACCTGGCTGGGGAGGCAAATTAATTTGTGGCATGG
ACGAGCCCACAGCAGTAGCAACAGCGCTGGTGGCCATGTCTGCCTTGATG
TACAGGTAAATGGGAGCAGGGGAGGAAGGACGGATAAGCGATACGGGGAG
AGGGAGTTTGTGGGAAACGGTCACATTGAGCGGTAGACGCGGCTTTATCA
ACCGTGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCT
CCCTTCCTTCCTCCTAAGCTTGGAAGCCGTCAATGTCAAACTTATGGGGA
AGGACGTGGGCTACTGGACCATCAGCGTGTGGCGCGGAGGGGTAGGCGCG
GTGTGTTGCCTCACGTCTTACTTCGCCACGCCCAGAGAGGAGGGGACGAA
CCCCCTGGGTAGGGCAGGAGGGAGGGAGGGAGGGAGGGAAATGAAGGAGA
TATAAAATATCCGCTCAGACGGGATAACAATCCCTTTCCCTCCTTCTCTC
CCTTACTGCCTTACTCCCTCCCTCCCTCCCTCCCTGCAGGTCAAGCTGCC
AACAGACCGATGCTCGCCCTTCGGGGAGTCACGGGCGCCGCCGCGGTCAT
CTCCAGCTTTGCCGCTCTGACGGTACGTAGGGAGGGAGGGAGAGAGGGAG
GGAGGAAGAAGAAGTGATGTGGTAATTCGGGACGAGTGTCCCTTACTCCT
ACTCCTCCCTCCCTCCTTCGGCCCCTCCCTCCCTCCCTCCCTCCCAGAGC
ATGGACATGGGAGATGCCACCTGCATATTTTCCACGGCCCCGCTGTGGAC
GGCGCTGATAGCCGTGAGCGTGAGAAAGGTGAGGAAGGGAGGGAGGGAGG
GAGGGAGGGGCCGAAGGAGGGAACAGGGTTGGTTTCAATTCTTTCCGTCA
CGCGCGACAATCGTTCACGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT
TCAGGGCACCTGGTCTCACTTCGACACCCTGGCTGCAATCTGCTGCACGG
TCGGTGTCCTCCTCGTTCTCAAGCCCAGCCCCCTCTCCTCCACACCCTCC
CTCCCTCCCTCCCCCCTCCCGACTGGGGCCTCGACCCCGATATTGCGGAA
CACGCCGTTCGGCATCCTCATGGCTCTGGTCTCCGCAGTCACCACAGGTA
AGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGATGGAGAAGCCACTGTACG
GGGAGAATTTCGTCCAAATTACGGTTTGTTTCGGCTCACCTTCACCTGCT
CCCCTCCCTCCCAGCCGCCTTCACCGTCCTGACCCGCTACGTGCAGCACG
AGAACACCTCTGTGGTCTCGGGCTACGTGATGGTGGCTTGCATTCTCCTC
GCCTTCCCCGGCATGATCTACGAGCAACTCACGCGGGAAAATCTGGTACG
CCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTGATT
CACCCGAGGCCCGCCGACCGGACTATGCAGACCCGTTGCGGTTCTCGTTA
TTCATATCCTTCTATCTCCCTCCCTCTTCCCCTGAACCCCTCCCTCCCTC
CTTCTTCTCTCCCAGACACTGTCTCACGGCTGGGTTTCCACCCTGATTCA
ACTCTTCCTCACCGGCGTCTTCTCCTACGCGGCCCTCATGTCCAAAACCT
ATGCCATGCAAATCACCCGGAAAATCGGCGGTATGTCCCCTCCTCCCTCC
CTCCTTCCCCTGCTCCCCCTCTCCCTCCAAACCTCCCCCCGTGATCGTCA
TGTGCTACCTTTCCATTCTTTTGGGCCGTCGGATTCGAAACTTTCCTCCT
CCATCAACCTCATCCTTCCTCCCTCCCTCCCTCTTCTCTCCCTCCCTCCC
CCCCTCCAATAGTGATCGTCATGCGCTACCTCTCCATCTTCTTCGCCTTC
GGTTTTGAGGCTTTCCTCCTCCACCATGAGGTAGATGGCCTAGCCCTCCT
AGGTGCCGCCGTCATTGTGGCAGGCTGCGTCCTCTCTGTACTGACGCAGG
GTGCGAAAGGAGGTAAGTGAAAGAGAGGAGGCGACTGGAGGAAGGGAGGG
AGGGAGAGAGGGAAGGAGGGAGGGAAGAAGAGGGGGGAGGGAGGATACGG
GAGACCATCGCGAGATGTATGAGCATCACCGCCATTTCTCACGACCTTCC
TTCCCTTCTTGCCCACCTCCCTCCCTTCCTTCCTCCATCCAGGTGCTGTT
GATTCAACCGTTGTAGATGACACTCTTTCCCTTTCCGGCTCCCTGGCCAA
AGCCCAGGCGGCTGCTGCTACTGCTGCTACTGCTGCTGCTACTGCTGCTG
CTGGAGCGGCGGCGGGGAGGGGGTCGAGAGGAAGGAAGAACATCGTGACG
GCGCAGGCGTGATGGGGAAGGAAGAGCGTGATGGAGAAGAGCGGGGAAAA
CGGCGCAGGGGACAAGGAAGAGGCCACGTCACGAAGGGAGGGAAGAGACG
AAAAAAGGCACGAGAGTGTGGGGGGGGTGATGAGGCAGGAGGAAGCGACA
GAGGGAGCGAGGGACCGCAAGGGATTGAACATTTTCTGTATGGATGCAGG
TGAGGTGCGCGTGAGTGAATAGAAAAAATAGAGGAAGCCCAATTTTGTGG
TGGTTTATGCCTGTAGGTGCAGAAGAGCGTGTATAAATCATGTGGGGAGT
GAGTGTGTGTGTTTCCAAGCATAACAAGGCCGGGGGAAAAGGCTAGAGAC
AGAGGCCGAGGTTGGATGAATCAAATCCAAATAACAGAAGATTCAGCGAT
TTTCGCCACGCGAATATCAGGGG back to topCoding sequence (CDS) from alignment at chr7:91518..95190- >NO07G00210.1 ID=NO07G00210.1|Name=NO07G00210.1|organism=Nannochloropsis oceanica|type=CDS|length=1692bp|location=Sequence derived from alignment at chr7:91518..95190- (Nannochloropsis oceanica) ATGGTCATCAATGCGCTCCCTTCTCCCTCATCTAGAGGACAGAATATGCA GGAAGAGGAGTCTCTACCACAACCACAGTTACCACCACCACCACTAACAT CGGAAGATGGAGAGGGAGGAGAGAATGAAGTGGCATTGACGCTGTCCAGC TCCAACCGCAACCAACTCTACAGCCATTGTGATGACGAGGACGATGAAGG CGTGATGGCCGTTCCAGTGTGCTACCGTCCTTTCCCGCAGCATAGGCAGG CTAGCATGGATGTGGAGGGAGGGAGAGGTTACTCCACGACCTTTGGCGCG GAGGAAGACATGCACATGCGCACCCTCCGCCTCAGCCAGCAGCTGTGCCT AGATGATGGCGACAGTAGCAGCCATGACAAGGCGGCGGCAATGGCAACCA TGACAGCCACCGGGGCCGGAACCTTAACCCACACCGATAGTAAGGGCAAG TCACTGCAATCGCCCTTCTCCCTCCGCACTTCTGAAACCATCCCCTCCTC CTCCCCTTCCTCTGAGCCCCTTGGGCGGTCTGTTGTCGTACCTGGCTGGG GAGGCAAATTAATTTGTGGCATGGACGAGCCCACAGCAGTAGCAACAGCG CTGGTGGCCATGTCTGCCTTGATGTACAGCTTGGAAGCCGTCAATGTCAA ACTTATGGGGAAGGACGTGGGCTACTGGACCATCAGCGTGTGGCGCGGAG GGGTAGGCGCGGTGTGTTGCCTCACGTCTTACTTCGCCACGCCCAGAGAG GAGGGGACGAACCCCCTGGGTCAAGCTGCCAACAGACCGATGCTCGCCCT TCGGGGAGTCACGGGCGCCGCCGCGGTCATCTCCAGCTTTGCCGCTCTGA CGAGCATGGACATGGGAGATGCCACCTGCATATTTTCCACGGCCCCGCTG TGGACGGCGCTGATAGCCGTGAGCGTGAGAAAGGGCACCTGGTCTCACTT CGACACCCTGGCTGCAATCTGCTGCACGGTCGGTGTCCTCCTCGTTCTCA AGCCCAGCCCCCTCTCCTCCACACCCTCCCTCCCTCCCTCCCCCCTCCCG ACTGGGGCCTCGACCCCGATATTGCGGAACACGCCGTTCGGCATCCTCAT GGCTCTGGTCTCCGCAGTCACCACAGCCGCCTTCACCGTCCTGACCCGCT ACGTGCAGCACGAGAACACCTCTGTGGTCTCGGGCTACGTGATGGTGGCT TGCATTCTCCTCGCCTTCCCCGGCATGATCTACGAGCAACTCACGCGGGA AAATCTGACACTGTCTCACGGCTGGGTTTCCACCCTGATTCAACTCTTCC TCACCGGCGTCTTCTCCTACGCGGCCCTCATGTCCAAAACCTATGCCATG CAAATCACCCGGAAAATCGGCGTGATCGTCATGCGCTACCTCTCCATCTT CTTCGCCTTCGGTTTTGAGGCTTTCCTCCTCCACCATGAGGTAGATGGCC TAGCCCTCCTAGGTGCCGCCGTCATTGTGGCAGGCTGCGTCCTCTCTGTA CTGACGCAGGGTGCGAAAGGAGGTGCTGTTGATTCAACCGTTGTAGATGA CACTCTTTCCCTTTCCGGCTCCCTGGCCAAAGCCCAGGCGGCTGCTGCTA CTGCTGCTACTGCTGCTGCTACTGCTGCTGCTGGAGCGGCGGCGGGGAGG GGGTCGAGAGGAAGGAAGAACATCGTGACGGCGCAGGCGTGA back to top
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