NO07G00210.1, NO07G00210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00210.1
Unique NameNO07G00210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2334
Alignment locationchr7:91518..95190 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:91518..95190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G00210.1 vs.
Match: CEM32846.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 84.0 bits (206), Expect = 1.700e-12
Identity = 81/316 (25.63%), Postives = 143/316 (45.25%), Query Frame = 0
Query:  196 AVATALVAMSALMYSLEAVNVKLMGKDVGYWTISVWRGGVGAVC---CLTSYFATPREEGTNPLGQAANRPMLALRGVTGAAAVISSFAALTSMDMGDATCIFSTAPLWTALIAVSVRKGTWSHFDTLAAICCTVGVLLVLKPSPLSSTPSLPPSPLPTGASTPILRNTPFGILMALVSAVTTAAFTVLTRYVQHENTSVVSGYVMVACILLAFPGMIYEQLTRENLTLS-------HGWVSTLIQLFLTGVFSYAALMSKTYAMQITRKIGVIVMRYLSIFFAFGFEAFLLHHEVDGLALLGAAVIVAGCVLSVL 502
            A      AM+A++ ++ +  VK+         + + RG    VC   CL       R    +PLG    R +L +R V G+ A+   F  ++ + +GDA+    T P++TAL+A  V    W+   TLAA+C   GV+ + +P  L    S+ P     G++TP++ +    +L+AL  A+        TR +    ++VV    +   I LA  G+I      ++++ S       +GW++ +      GV  + A       +QI +      +  L + FA+  +  +L   +D  +L GA +IVA   L ++
Sbjct:  106 AAGLVFCAMAAVLRAVSSTLVKVTAGKTSVLYVLLARGVTEMVCGIVCLAVQMVVERR-WISPLGPKEIRHLLVVRAVCGSLAIGFFFFCISQLPIGDASAASFTTPIFTALLASCVLGEPWTTVCTLAAMCSLAGVIFIAQPDVLFHHGSIQPHESIVGSATPVVASRVVAVLLALTGALAGGTAYTATRRIGPRVSAVVLVLWISTMITLASTGLIATLAPNDSISSSGDDGFSLYGWLAAV------GVIGFGAHWCLNRGLQIGQAGPGAFLINLDVAFAYILQVCVLGRALDQWSLYGALLIVAAASLMIV 414          
The following BLAST results are available for this feature:
BLAST of NO07G00210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CEM32846.11.700e-1225.63unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00210NO07G00210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00210.1NO07G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00210.1.cds1NO07G00210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00210.1.cds2NO07G00210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00210.1.cds3NO07G00210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00210.1.cds4NO07G00210.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00210.1.cds5NO07G00210.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00210.1.cds6NO07G00210.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00210.1.cds7NO07G00210.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00210.1.cds8NO07G00210.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00210.1.cds9NO07G00210.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00210.1.cds10NO07G00210.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00210.1 ID=NO07G00210.1|Name=NO07G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2334bp
AAAGGAGCCAACTGCTGCTGCCTATCACGATCATATATACACGACGCACC
CCTTGCATACCAGCTGCGGCATCCCCCGGAAAATTCGTCGGGTCGACGAT
CTCGTTGTCGTCAGGCTATAAGATCTAGGTACCACAGGTCACGCTATTTG
CAGTCCCTCTCCCTTTCACCATCAGGCATCGCATGCCCGACAAACCACGA
CGTGCATAAGGGCGCGGACCAAAACCAGAATATGGTCATCAATGCGCTCC
CTTCTCCCTCATCTAGAGGACAGAATATGCAGGAAGAGGAGTCTCTACCA
CAACCACAGTTACCACCACCACCACTAACATCGGAAGATGGAGAGGGAGG
AGAGAATGAAGTGGCATTGACGCTGTCCAGCTCCAACCGCAACCAACTCT
ACAGCCATTGTGATGACGAGGACGATGAAGGCGTGATGGCCGTTCCAGTG
TGCTACCGTCCTTTCCCGCAGCATAGGCAGGCTAGCATGGATGTGGAGGG
AGGGAGAGGTTACTCCACGACCTTTGGCGCGGAGGAAGACATGCACATGC
GCACCCTCCGCCTCAGCCAGCAGCTGTGCCTAGATGATGGCGACAGTAGC
AGCCATGACAAGGCGGCGGCAATGGCAACCATGACAGCCACCGGGGCCGG
AACCTTAACCCACACCGATAGTAAGGGCAAGTCACTGCAATCGCCCTTCT
CCCTCCGCACTTCTGAAACCATCCCCTCCTCCTCCCCTTCCTCTGAGCCC
CTTGGGCGGTCTGTTGTCGTACCTGGCTGGGGAGGCAAATTAATTTGTGG
CATGGACGAGCCCACAGCAGTAGCAACAGCGCTGGTGGCCATGTCTGCCT
TGATGTACAGCTTGGAAGCCGTCAATGTCAAACTTATGGGGAAGGACGTG
GGCTACTGGACCATCAGCGTGTGGCGCGGAGGGGTAGGCGCGGTGTGTTG
CCTCACGTCTTACTTCGCCACGCCCAGAGAGGAGGGGACGAACCCCCTGG
GTCAAGCTGCCAACAGACCGATGCTCGCCCTTCGGGGAGTCACGGGCGCC
GCCGCGGTCATCTCCAGCTTTGCCGCTCTGACGAGCATGGACATGGGAGA
TGCCACCTGCATATTTTCCACGGCCCCGCTGTGGACGGCGCTGATAGCCG
TGAGCGTGAGAAAGGGCACCTGGTCTCACTTCGACACCCTGGCTGCAATC
TGCTGCACGGTCGGTGTCCTCCTCGTTCTCAAGCCCAGCCCCCTCTCCTC
CACACCCTCCCTCCCTCCCTCCCCCCTCCCGACTGGGGCCTCGACCCCGA
TATTGCGGAACACGCCGTTCGGCATCCTCATGGCTCTGGTCTCCGCAGTC
ACCACAGCCGCCTTCACCGTCCTGACCCGCTACGTGCAGCACGAGAACAC
CTCTGTGGTCTCGGGCTACGTGATGGTGGCTTGCATTCTCCTCGCCTTCC
CCGGCATGATCTACGAGCAACTCACGCGGGAAAATCTGACACTGTCTCAC
GGCTGGGTTTCCACCCTGATTCAACTCTTCCTCACCGGCGTCTTCTCCTA
CGCGGCCCTCATGTCCAAAACCTATGCCATGCAAATCACCCGGAAAATCG
GCGTGATCGTCATGCGCTACCTCTCCATCTTCTTCGCCTTCGGTTTTGAG
GCTTTCCTCCTCCACCATGAGGTAGATGGCCTAGCCCTCCTAGGTGCCGC
CGTCATTGTGGCAGGCTGCGTCCTCTCTGTACTGACGCAGGGTGCGAAAG
GAGGTGCTGTTGATTCAACCGTTGTAGATGACACTCTTTCCCTTTCCGGC
TCCCTGGCCAAAGCCCAGGCGGCTGCTGCTACTGCTGCTACTGCTGCTGC
TACTGCTGCTGCTGGAGCGGCGGCGGGGAGGGGGTCGAGAGGAAGGAAGA
ACATCGTGACGGCGCAGGCGTGATGGGGAAGGAAGAGCGTGATGGAGAAG
AGCGGGGAAAACGGCGCAGGGGACAAGGAAGAGGCCACGTCACGAAGGGA
GGGAAGAGACGAAAAAAGGCACGAGAGTGTGGGGGGGGTGATGAGGCAGG
AGGAAGCGACAGAGGGAGCGAGGGACCGCAAGGGATTGAACATTTTCTGT
ATGGATGCAGGTGAGGTGCGCGTGAGTGAATAGAAAAAATAGAGGAAGCC
CAATTTTGTGGTGGTTTATGCCTGTAGGTGCAGAAGAGCGTGTATAAATC
ATGTGGGGAGTGAGTGTGTGTGTTTCCAAGCATAACAAGGCCGGGGGAAA
AGGCTAGAGACAGAGGCCGAGGTTGGATGAATCAAATCCAAATAACAGAA
GATTCAGCGATTTTCGCCACGCGAATATCAGGGG
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protein sequence of NO07G00210.1

>NO07G00210.1-protein ID=NO07G00210.1-protein|Name=NO07G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=564bp
MVINALPSPSSRGQNMQEEESLPQPQLPPPPLTSEDGEGGENEVALTLSS
SNRNQLYSHCDDEDDEGVMAVPVCYRPFPQHRQASMDVEGGRGYSTTFGA
EEDMHMRTLRLSQQLCLDDGDSSSHDKAAAMATMTATGAGTLTHTDSKGK
SLQSPFSLRTSETIPSSSPSSEPLGRSVVVPGWGGKLICGMDEPTAVATA
LVAMSALMYSLEAVNVKLMGKDVGYWTISVWRGGVGAVCCLTSYFATPRE
EGTNPLGQAANRPMLALRGVTGAAAVISSFAALTSMDMGDATCIFSTAPL
WTALIAVSVRKGTWSHFDTLAAICCTVGVLLVLKPSPLSSTPSLPPSPLP
TGASTPILRNTPFGILMALVSAVTTAAFTVLTRYVQHENTSVVSGYVMVA
CILLAFPGMIYEQLTRENLTLSHGWVSTLIQLFLTGVFSYAALMSKTYAM
QITRKIGVIVMRYLSIFFAFGFEAFLLHHEVDGLALLGAAVIVAGCVLSV
LTQGAKGGAVDSTVVDDTLSLSGSLAKAQAAAATAATAAATAAAGAAAGR
GSRGRKNIVTAQA*
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mRNA from alignment at chr7:91518..95190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00210.1 ID=NO07G00210.1|Name=NO07G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=3673bp|location=Sequence derived from alignment at chr7:91518..95190- (Nannochloropsis oceanica)
AAAGGAGCCAACTGCTGCTGCCTATCACGATCATATATACACGACGCACC CCTTGCATACCAGCTGCGGCATCCCCCGGAAAATTCGTCGGGTCGACGAT CTCGTTGTCGTCAGGCTATAAGATCTAGGTACCACAGGTCACGCTATTTG CAGTCCCTCTCCCTTTCACCATCAGGCATCGCATGCCCGACAAACCACGA CGTGCATAAGGGCGCGGACCAAAACCAGAATATGGTCATCAATGCGCTCC CTTCTCCCTCATCTAGAGGACAGAATATGCAGGAAGAGGAGTCTCTACCA CAACCACAGTTACCACCACCACCACTAACATCGGAAGATGGAGAGGGAGG AGAGAATGAAGTGGCATTGACGCTGTCCAGCTCCAACCGCAACCAACTCT ACAGCCATTGTGATGACGAGGACGATGAAGGCGTGATGGCCGTTCCAGTG TGCTACCGTCCTTTCCCGCAGCATAGGCAGGCTAGCATGGATGTGGAGGG AGGGAGAGGTTACTCCACGACCTTTGGCGCGGAGGAAGACATGCACATGC GCACCCTCCGCCTCAGCCAGCAGCTGTGCCTAGATGATGGCGACAGTAGC AGCCATGACAAGGCGGCGGCAATGGTACGCAAGTCTTTATGGTTTTGACT TTTTGCTGTCACGAAACAAGTAGATAACAAAACAGTGCGCCTCATTGATC TTTACATCCCTCCCTCCCTCCCTCCCTCCTTCCTTCCCTCATTCTTCTCC TCTGTGGCTCACTCTACAGGCAACCATGACAGCCACCGGGGCCGGAACCT TAACCCACACCGATAGTAAGGGCAAGTCACTGCAATCGCCCTTCTCCCTC CGCACTTCTGAAACCATCCCCTCCTCCTCCCCTTCCTCTGAGCCCCTTGG GCGGTCTGTTGTCGTACCTGGCTGGGGAGGCAAATTAATTTGTGGCATGG ACGAGCCCACAGCAGTAGCAACAGCGCTGGTGGCCATGTCTGCCTTGATG TACAGGTAAATGGGAGCAGGGGAGGAAGGACGGATAAGCGATACGGGGAG AGGGAGTTTGTGGGAAACGGTCACATTGAGCGGTAGACGCGGCTTTATCA ACCGTGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCT CCCTTCCTTCCTCCTAAGCTTGGAAGCCGTCAATGTCAAACTTATGGGGA AGGACGTGGGCTACTGGACCATCAGCGTGTGGCGCGGAGGGGTAGGCGCG GTGTGTTGCCTCACGTCTTACTTCGCCACGCCCAGAGAGGAGGGGACGAA CCCCCTGGGTAGGGCAGGAGGGAGGGAGGGAGGGAGGGAAATGAAGGAGA TATAAAATATCCGCTCAGACGGGATAACAATCCCTTTCCCTCCTTCTCTC CCTTACTGCCTTACTCCCTCCCTCCCTCCCTCCCTGCAGGTCAAGCTGCC AACAGACCGATGCTCGCCCTTCGGGGAGTCACGGGCGCCGCCGCGGTCAT CTCCAGCTTTGCCGCTCTGACGGTACGTAGGGAGGGAGGGAGAGAGGGAG GGAGGAAGAAGAAGTGATGTGGTAATTCGGGACGAGTGTCCCTTACTCCT ACTCCTCCCTCCCTCCTTCGGCCCCTCCCTCCCTCCCTCCCTCCCAGAGC ATGGACATGGGAGATGCCACCTGCATATTTTCCACGGCCCCGCTGTGGAC GGCGCTGATAGCCGTGAGCGTGAGAAAGGTGAGGAAGGGAGGGAGGGAGG GAGGGAGGGGCCGAAGGAGGGAACAGGGTTGGTTTCAATTCTTTCCGTCA CGCGCGACAATCGTTCACGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT TCAGGGCACCTGGTCTCACTTCGACACCCTGGCTGCAATCTGCTGCACGG TCGGTGTCCTCCTCGTTCTCAAGCCCAGCCCCCTCTCCTCCACACCCTCC CTCCCTCCCTCCCCCCTCCCGACTGGGGCCTCGACCCCGATATTGCGGAA CACGCCGTTCGGCATCCTCATGGCTCTGGTCTCCGCAGTCACCACAGGTA AGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGATGGAGAAGCCACTGTACG GGGAGAATTTCGTCCAAATTACGGTTTGTTTCGGCTCACCTTCACCTGCT CCCCTCCCTCCCAGCCGCCTTCACCGTCCTGACCCGCTACGTGCAGCACG AGAACACCTCTGTGGTCTCGGGCTACGTGATGGTGGCTTGCATTCTCCTC GCCTTCCCCGGCATGATCTACGAGCAACTCACGCGGGAAAATCTGGTACG CCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTGATT CACCCGAGGCCCGCCGACCGGACTATGCAGACCCGTTGCGGTTCTCGTTA TTCATATCCTTCTATCTCCCTCCCTCTTCCCCTGAACCCCTCCCTCCCTC CTTCTTCTCTCCCAGACACTGTCTCACGGCTGGGTTTCCACCCTGATTCA ACTCTTCCTCACCGGCGTCTTCTCCTACGCGGCCCTCATGTCCAAAACCT ATGCCATGCAAATCACCCGGAAAATCGGCGGTATGTCCCCTCCTCCCTCC CTCCTTCCCCTGCTCCCCCTCTCCCTCCAAACCTCCCCCCGTGATCGTCA TGTGCTACCTTTCCATTCTTTTGGGCCGTCGGATTCGAAACTTTCCTCCT CCATCAACCTCATCCTTCCTCCCTCCCTCCCTCTTCTCTCCCTCCCTCCC CCCCTCCAATAGTGATCGTCATGCGCTACCTCTCCATCTTCTTCGCCTTC GGTTTTGAGGCTTTCCTCCTCCACCATGAGGTAGATGGCCTAGCCCTCCT AGGTGCCGCCGTCATTGTGGCAGGCTGCGTCCTCTCTGTACTGACGCAGG GTGCGAAAGGAGGTAAGTGAAAGAGAGGAGGCGACTGGAGGAAGGGAGGG AGGGAGAGAGGGAAGGAGGGAGGGAAGAAGAGGGGGGAGGGAGGATACGG GAGACCATCGCGAGATGTATGAGCATCACCGCCATTTCTCACGACCTTCC TTCCCTTCTTGCCCACCTCCCTCCCTTCCTTCCTCCATCCAGGTGCTGTT GATTCAACCGTTGTAGATGACACTCTTTCCCTTTCCGGCTCCCTGGCCAA AGCCCAGGCGGCTGCTGCTACTGCTGCTACTGCTGCTGCTACTGCTGCTG CTGGAGCGGCGGCGGGGAGGGGGTCGAGAGGAAGGAAGAACATCGTGACG GCGCAGGCGTGATGGGGAAGGAAGAGCGTGATGGAGAAGAGCGGGGAAAA CGGCGCAGGGGACAAGGAAGAGGCCACGTCACGAAGGGAGGGAAGAGACG AAAAAAGGCACGAGAGTGTGGGGGGGGTGATGAGGCAGGAGGAAGCGACA GAGGGAGCGAGGGACCGCAAGGGATTGAACATTTTCTGTATGGATGCAGG TGAGGTGCGCGTGAGTGAATAGAAAAAATAGAGGAAGCCCAATTTTGTGG TGGTTTATGCCTGTAGGTGCAGAAGAGCGTGTATAAATCATGTGGGGAGT GAGTGTGTGTGTTTCCAAGCATAACAAGGCCGGGGGAAAAGGCTAGAGAC AGAGGCCGAGGTTGGATGAATCAAATCCAAATAACAGAAGATTCAGCGAT TTTCGCCACGCGAATATCAGGGG
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Coding sequence (CDS) from alignment at chr7:91518..95190-

>NO07G00210.1 ID=NO07G00210.1|Name=NO07G00210.1|organism=Nannochloropsis oceanica|type=CDS|length=1692bp|location=Sequence derived from alignment at chr7:91518..95190- (Nannochloropsis oceanica)
ATGGTCATCAATGCGCTCCCTTCTCCCTCATCTAGAGGACAGAATATGCA
GGAAGAGGAGTCTCTACCACAACCACAGTTACCACCACCACCACTAACAT
CGGAAGATGGAGAGGGAGGAGAGAATGAAGTGGCATTGACGCTGTCCAGC
TCCAACCGCAACCAACTCTACAGCCATTGTGATGACGAGGACGATGAAGG
CGTGATGGCCGTTCCAGTGTGCTACCGTCCTTTCCCGCAGCATAGGCAGG
CTAGCATGGATGTGGAGGGAGGGAGAGGTTACTCCACGACCTTTGGCGCG
GAGGAAGACATGCACATGCGCACCCTCCGCCTCAGCCAGCAGCTGTGCCT
AGATGATGGCGACAGTAGCAGCCATGACAAGGCGGCGGCAATGGCAACCA
TGACAGCCACCGGGGCCGGAACCTTAACCCACACCGATAGTAAGGGCAAG
TCACTGCAATCGCCCTTCTCCCTCCGCACTTCTGAAACCATCCCCTCCTC
CTCCCCTTCCTCTGAGCCCCTTGGGCGGTCTGTTGTCGTACCTGGCTGGG
GAGGCAAATTAATTTGTGGCATGGACGAGCCCACAGCAGTAGCAACAGCG
CTGGTGGCCATGTCTGCCTTGATGTACAGCTTGGAAGCCGTCAATGTCAA
ACTTATGGGGAAGGACGTGGGCTACTGGACCATCAGCGTGTGGCGCGGAG
GGGTAGGCGCGGTGTGTTGCCTCACGTCTTACTTCGCCACGCCCAGAGAG
GAGGGGACGAACCCCCTGGGTCAAGCTGCCAACAGACCGATGCTCGCCCT
TCGGGGAGTCACGGGCGCCGCCGCGGTCATCTCCAGCTTTGCCGCTCTGA
CGAGCATGGACATGGGAGATGCCACCTGCATATTTTCCACGGCCCCGCTG
TGGACGGCGCTGATAGCCGTGAGCGTGAGAAAGGGCACCTGGTCTCACTT
CGACACCCTGGCTGCAATCTGCTGCACGGTCGGTGTCCTCCTCGTTCTCA
AGCCCAGCCCCCTCTCCTCCACACCCTCCCTCCCTCCCTCCCCCCTCCCG
ACTGGGGCCTCGACCCCGATATTGCGGAACACGCCGTTCGGCATCCTCAT
GGCTCTGGTCTCCGCAGTCACCACAGCCGCCTTCACCGTCCTGACCCGCT
ACGTGCAGCACGAGAACACCTCTGTGGTCTCGGGCTACGTGATGGTGGCT
TGCATTCTCCTCGCCTTCCCCGGCATGATCTACGAGCAACTCACGCGGGA
AAATCTGACACTGTCTCACGGCTGGGTTTCCACCCTGATTCAACTCTTCC
TCACCGGCGTCTTCTCCTACGCGGCCCTCATGTCCAAAACCTATGCCATG
CAAATCACCCGGAAAATCGGCGTGATCGTCATGCGCTACCTCTCCATCTT
CTTCGCCTTCGGTTTTGAGGCTTTCCTCCTCCACCATGAGGTAGATGGCC
TAGCCCTCCTAGGTGCCGCCGTCATTGTGGCAGGCTGCGTCCTCTCTGTA
CTGACGCAGGGTGCGAAAGGAGGTGCTGTTGATTCAACCGTTGTAGATGA
CACTCTTTCCCTTTCCGGCTCCCTGGCCAAAGCCCAGGCGGCTGCTGCTA
CTGCTGCTACTGCTGCTGCTACTGCTGCTGCTGGAGCGGCGGCGGGGAGG
GGGTCGAGAGGAAGGAAGAACATCGTGACGGCGCAGGCGTGA
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Synonyms
Publications