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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:19869..24358 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00030.2 vs.
Match: EWM27373.1 (hypothetical protein Naga_100696g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 246.9 bits (629), Expect = 8.300e-62 Identity = 123/189 (65.08%), Postives = 146/189 (77.25%), Query Frame = 0
Query: 1 MVFHPIFLSPALLQTPALLQSSSLSLALIACLSMAVLYVAALYVLPASIRQRHRDDATHVKARFFSVVAACLLSIRIFLLFTNPAPDAVHPVYHWLGFTGWTNPAIFLPLLAIICLFFGPIVVICAESYYDRWYEVVMHLSSSPLLFRLRRRRIPLPSTWYDWWERRRIAHRLTKETLWRNLVVAPLTE 190
MV HP L P+LL+ A LQ SSL+LAL ACLSMA+LYVA+LY+LPASIR RHRDD H+KARF SV+ ACLLSIRIFLLF +P+P A P+Y WLG TGW NP++FLPLLAI+CLF GPI V+ AE YYDRWYE+V + SS LL+ L RR P P +W +W ++RR H K+ LWRNLVVAPLTE
Sbjct: 1 MVLHPAVLPPSLLRAHAGLQPSSLTLALAACLSMAILYVASLYLLPASIRLRHRDDPLHIKARFVSVIVACLLSIRIFLLFASPSPGAGLPIYVWLGLTGWNNPSVFLPLLAIVCLFLGPITVMIAECYYDRWYELVEYQSSRSLLYHLSRRTAPSPRSWLEWVDQRRRRHGQGKDVLWRNLVVAPLTE 189
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00030.2 ID=NO07G00030.2|Name=NO07G00030.2|organism=Nannochloropsis oceanica|type=mRNA|length=3935bp TCCAGTTGCTGGCAGCAACGGAGGATGAGGGAAGGGGATGTAGAAAGGTT GAAGACAAGAGGAGATGAGCAAATGTCGAGGGCTCATGGGGCTCAGGCTC TTGTGCCCTATTAGCAACTAGATTGATACCCTTTTGAAGCTCTCGAGCAT CGAAGGCCATGTCGACCCTCTCCCTCGTTTCCTCCCCCCCTTCCCACGCC CTGTCATTCCCTTGCTGCGACTTACCCGCACTTCGCTCTTGTGCCGCTTG CGCATCTCCTCCTGCGTTTCCCCGACTGTCTCTCGCGCGGCCTCCTCTTC TTTCATCATGGCCTCGCTTGGGCTCGTGTGAGGCCTGCGTGTAGGGAGAC GAGGAGGTAGAGGCGAAATCGGATGATGACCGAGGTGAGTCGTCGCTCGT GTGCAATTAAAAAAAATCATTAAGAGGACAAAAAACATGCAAATGGCCTC GTTGACTACTGCGTCTCTATGTCTCTTATTACAGAAACTGGTTCACTGCC TGGGTGTGTGACCAAAGGCCAGAAGGTACCTAACTGCTTGTCCATGGCAA CCAACATCGCCGCTTCGTCGCCCAAAAATCAAGCAACGTCTCACTCCCCT TTTCTCTTTCTCACGCACACACATAGACACACTCACACGCCGTGGCGAAC TGCCCATTTGCTGTACTCTCCCGCCCTCCACCGCCATGGTGTTCCATCCC ATATTTCTCTCGCCCGCCCTGCTTCAAACCCCTGCCCTCCTCCAGTCTTC CTCCCTCAGTCTCGCCCTCATTGCGTGTCTGTCCATGGCCGTGCTTTACG TTGCCGCGCTCTACGTCTTGCCGGCCTCTATCAGGCAACGGCACCGTGAC GATGCCACCCACGTCAAGGCGCGATTCTTCTCTGTGGTGGCGGCCTGTCT GCTTTCAATACGGATCTTCTTGCTCTTCACTAATCCCGCGCCTGACGCTG TGCATCCCGTCTATCACTGGCTGGGCTTCACAGGCTGGACGAACCCTGCC ATCTTTCTCCCCCTCCTGGCCATCATCTGCCTCTTCTTCGGGCCCATCGT AGTCATTTGCGCAGAGAGCTACTACGATCGTTGGTATGAGGTAGTGATGC ACCTATCCTCTTCTCCCCTCCTCTTTCGGCTGCGTCGTCGTCGTATCCCC CTGCCCTCGACCTGGTACGACTGGTGGGAGAGGAGGAGAATCGCGCACAG GCTGACCAAGGAAACGCTATGGAGAAACCTGGTGGTGGCGCCACTGACGG AGGTAGGGCATGGGAGGGTCAACACAAAGGGACAGAAATTTGAGAACTTC ATTCCATCCATCGCCCGGCCTCGACTTGAACCTATCTGCCTTCTTTTTTC AAGGTCCCTTCTTCCCTCCCTCCTTCCGCTTACAGGAAATCGTATTCCGT GCCTGCATGCTCCCTCTCCTTTACCAAGCTTCCTCCTCCCCTTCCTCCCT GGATTCCCCCCGTGCTATCCCTTTCGTGAAACTGATCTTCTTGTCACCCC TTTTTTTTGGTCTGGCGCACGCCCACCACGCCCTGCAGCGGGTGCGAGAA GGATTGCCGCCCGCACAGGCCCTTCTCGAAGTAGCGTTGCAAGTTGCCTA CACCAGCATCTTCGGCTGGCATGCAGGTAAGGGCATGTTGGGGGCCGGAG GGATAGAGAGAAAGTTAGGAAAGAGGACGCCTTCAACTTTTCCCCATTCT CGATTATATATTCAGTTACCTCTTTCTTCTTCCACTCTCCAGCGTTCCTT TTCCTCCGCACCGGCTCTCTCCTGCCCTGCATCCTAACCCACTCCTTCTG CAACTTTGTGGGCCTCCCAAACCTGGCCTTTATGCTTTCACCCTCCTCTC TTACGCCCTCTCCTGCCTCCGCCTTCCTCCTGTATGTGCATCGATGGAAG TTTCTCGCTGCTCACCTTCTAGGGATCGCCCTTTTTGTCGCACTTTTGTT CCCATTCTCGGAGCCGAAGCTGTTCACCGAGAGAAGATTAGAAGGGGAAA GAGGTGTGCCATTATACTGGCAATGAGAACGGCAAAAAAGGCATGCGAGG GCGAGGGGTTTGTGGATAAATTCGTCCTTGAAAGGGAGCTCTGGAGGAAT TAATCAAAATAAAGAAATGAAATGAAAATGTCTCTATAAGTAGGCTTCGA CATATTTAGCGCTAAAGATCCCATTTGGCAAATGATGCTCGCTATTTTGC TTTTGATGACAGTGAATTGTGGGCGTTAATCATTTATGATACTGGCCATG TATTCGACGCGCCCGCGCCTCATCATCATATTTGGGAGAAATGAGACGGA TCTCGAAGGAAGTAAGTGCCCACCCAACAATTCACATGCGAGGCCCAAGA ATGTCTCTTACGTGATTGCTAGGCTCCATGATTTGTAGCATCCATCTGGC TTGTGTTATCCGTTGAACGTCAGGGAGCGTAATACAAATAAACAAATTGT TTCGTTTTGGGGGGGGAAGAGGTGGGGGGTATTTTTTCCCCAACTTACAA CCACACAAGCACTCCTCTGTATCTGCATCGTTACCTATGTACACGTTTAC ATACAATTTACGAGTGAATGGCATAGCCCATGTGCGGAAAACACGGCTTG TCGAGTTTCAAACCAGCAGCCGTGCACCAACCATCCCTCTGCTGCGCCCC TCTTTCCACTGCGCTTCTCCATCCTCCCGGTTTAGGTGATGCGTACCAAG TCCTATCCTAGACTCCGATGCTTCGTATACGCCAAGAATAATGTATGGGT GTATGGCGGTACGCGTCGTAGCGACATACGGGACAGCTACGCACGTTGTG CAGCCGTCCGCCAGCTGCCGCTGCCGCCCAGTCATCAAGTCTTGCCTGTT GTCAAAGTCAATATTTTGTGCCAATTCTTGAATAGTGCCCCAATCAGGTA AGAATGTGCCTGTTCTCTATACCAAAATTGATTTACCAGATAGCCCATAA GAGGAGCGACAGCGAAAGAAATAAAGAAACGATTCAAGTAACATGGCCAC AGTGGTGGGCTTTAGAAAGGTCACTGCGAGGACCCAAATAAACCAAAAAG CAACGCGCACAACACGCACTCAATTGTCGTTCACACGACATGAAGCAGTC AGTCACTACACTGGCGGAGATGAGTCTCCAAACGTCTCCACGCCGGAGAT ACACGCACGAGCGTTCGACCGACAAAAGCCCTACCTAACCTATCCCCTTT CATTCAACTATACGTGCTTTTCATCTCCCAATTGATTGCCATATCCCTCC GGTACAAGCATACACACTACGCTGCCTATGTGAGAAACGACAACTATCGA TAAAAAGGGGCCAAGGCATTGATATGAGCCGCTGGCCCACTCTTTCACGA GTGTGCTCTCCAGAGAGGAGGGGAAGTCTCACGTCCACTTCCGAGTCGTC ATATTACGCTGAAATGTAAAGTAGAAATGCTCGTCCGCTGCAAGAAAGAG TGAGATGGTTTTAGCCCTGCCTATAAACGTGTGGTAGGAGGGGGGGAAGG TGAAAGGGAGAAGGTGGATGCTGCAGCTCGACCATGCATGGTTACCCCCC GACCCATCCAGAGCCTATTTTTACCCTCTTTCTCTCGTGACACTCGAGCT TGCCTCTTTCCCTCGCCTCTAATCTCCCTCTCATGCCCCCGTCCTCTTTC AGATGTTTCCCATCCTCGCCCTTTCAGCCTCCACCTTTCCTTCGCCACCC TTACCCCGCATACGCTCCTTGTGTTTGCCCTCTCAAACCTATTTTCTACA ATTTCGTAGGCATATCATAAAGCTTGGCCATATCAATGCCCTTAGGATGG TCTATTCGTCTATTTCTCTCCCTCCCTCTCTCTCCCTCTTCCTCTACTTC TCACCTCTTCCCCTCCGTCGTCTTGTGGCGGCCTCGGACGCCTCCAGCTT GCTCTCAAGAATGTCTGGATCACATGTGTACCTGT back to topprotein sequence of NO07G00030.2 >NO07G00030.2-protein ID=NO07G00030.2-protein|Name=NO07G00030.2|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp MVFHPIFLSPALLQTPALLQSSSLSLALIACLSMAVLYVAALYVLPASIR QRHRDDATHVKARFFSVVAACLLSIRIFLLFTNPAPDAVHPVYHWLGFTG WTNPAIFLPLLAIICLFFGPIVVICAESYYDRWYEVVMHLSSSPLLFRLR RRRIPLPSTWYDWWERRRIAHRLTKETLWRNLVVAPLTEVGHGRVNTKGQ KFENFIPSIARPRLEPICLLFSRSLLPSLLPLTGNRIPCLHAPSPLPSFL LPFLPGFPPCYPFRETDLLVTPFFWSGARPPRPAAGARRIAARTGPSRSS VASCLHQHLRLACR* back to topmRNA from alignment at chr7:19869..24358- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00030.2 ID=NO07G00030.2|Name=NO07G00030.2|organism=Nannochloropsis oceanica|type=mRNA|length=4490bp|location=Sequence derived from alignment at chr7:19869..24358- (Nannochloropsis oceanica) TCCAGTTGCTGGCAGCAACGGAGGATGAGGGAAGGGGATGTAGAAAGGTT
GAAGACAAGAGGAGATGAGCAAATGTCGAGGGCTCATGGGGCTCAGGCTC
TTGTGCCCTATTAGCAACTAGATTGATACCCTTTTGAAGCTCTCGAGCAT
CGAAGGCCATGTCGACCCTCTCCCTCGTTTCCTCCCCCCCTTCCCACGCC
CTGTCATTCCCTTGCTGCGACTTACCCGCACTTCGCTCTTGTGCCGCTTG
CGCATCTCCTCCTGCGTTTCCCCGACTGTCTCTCGCGCGGCCTCCTCTTC
TTTCATCATGGCCTCGCTTGGGCTCGTGTGAGGCCTGCGTGTAGGGAGAC
GAGGAGGTAGAGGCGAAATCGGATGATGACCGAGGTGAGTCGTCGCTCGT
GTGCAATTAAAAAAAATCATTAAGAGGACAAAAAACATGCAAATGGCCTC
GTTGACTACTGCGTCTCTATGTCTCTTATTACAGAAACTGGTTCACTGCC
TGGGTGTGTGACCAAAGGCCAGAAGGTACCTAACTGCTTGTCCATGGCAA
CCAACATCGCCGCTTCGTCGCCCAAAAATCAAGCAACGTCTCACTCCCCT
TTTCTCTTTCTCACGCACACACATAGACACACTCACACGCCGTGGCGAAC
TGCCCATTTGCTGTACTCTCCCGCCCTCCACCGCCATGGTGTTCCATCCC
ATATTTCTCTCGCCCGCCCTGCTTCAAACCCCTGCCCTCCTCCAGTCTTC
CTCCCTCAGTCTCGCCCTCATTGCGTGTCTGTCCATGGCCGTGCTTTACG
TTGCCGCGCTCTACGTCTTGCCGGCCTCTATCAGGCAACGGCACCGTGAC
GATGCCACCCACGTCAAGGCGCGATTCTTCTCTGTGGTGGCGGCCTGTCT
GCTTTCAATACGGTAGGGTTGGAGAACGGAGGAGAGGAAGGAGGCCAGAA
GGGGAGGGGATGATAATGCTGACGAATCAAAACGAACCAAACTACCAGGA
TCTTCTTGCTCTTCACTAATCCCGCGCCTGACGCTGTGCATCCCGTCTAT
CACTGGCTGGGCTTCACAGGTATGTCCACACCTTTCTTGATTTCGCTCTT
TCGCTGCGCTCTTCCTCCTTACCCACCTTCCATCCCCTCCTACTTACGAC
CCGCTTCATATTTTCTTTCCTCCTCGTTGGCCTCAAACTATTGACGACAT
AATGGTTAGGCTGGACGAACCCTGCCATCTTTCTCCCCCTCCTGGCCATC
ATCTGCCTCTTCTTCGGGCCCATCGTAGTCATTTGCGCAGGTATGTAAAG
GAAAGTATGCTATCCTGTGCTCAGCCGCCCAATTTTTAACCCTTCCTCCT
TCCATCCCTTCATTTCTGCTTATGGGTCTTCTATCGTGGACGATAAGAAG
TGGAGATACGACACTCCCTGTCCTGTCCTTTCCCCTTCCTCCTCTCATCC
CTATCTGCTTACCTCCCTCCTGTTCGTCTCTCAGAGAGCTACTACGATCG
TTGGTATGAGGTAGTGATGCACCTATCCTCTTCTCCCCTCCTCTTTCGGC
TGCGTCGTCGTCGTATCCCCCTGCCCTCGACCTGGTACGACTGGTGGGAG
AGGAGGAGAATCGCGCACAGGCTGACCAAGGAAACGCTATGGAGAAACCT
GGTGGTGGCGCCACTGACGGAGGTAGGGCATGGGAGGGTCAACACAAAGG
GACAGAAATTTGAGAACTTCATTCCATCCATCGCCCGGCCTCGACTTGAA
CCTATCTGCCTTCTTTTTTCAAGGTCCCTTCTTCCCTCCCTCCTTCCGCT
TACAGGAAATCGTATTCCGTGCCTGCATGCTCCCTCTCCTTTACCAAGCT
TCCTCCTCCCCTTCCTCCCTGGATTCCCCCCGTGCTATCCCTTTCGTGAA
ACTGATCTTCTTGTCACCCCTTTTTTTTGGTCTGGCGCACGCCCACCACG
CCCTGCAGCGGGTGCGAGAAGGATTGCCGGTAGGGGACGAGGGAAGGCGG
GATGAAGGAGGCAAATCCTAAAAGAGAGAGCACCTATGAAGAGCTGAGGC
AAAAGAGCGTGAGGTTCATGAAAATCTGTTTTTCTCCCCTTCGCTCTCCT
CGTTTGCCTCACAGCCCGCACAGGCCCTTCTCGAAGTAGCGTTGCAAGTT
GCCTACACCAGCATCTTCGGCTGGCATGCAGGTAAGGGCATGTTGGGGGC
CGGAGGGATAGAGAGAAAGTTAGGAAAGAGGACGCCTTCAACTTTTCCCC
ATTCTCGATTATATATTCAGTTACCTCTTTCTTCTTCCACTCTCCAGCGT
TCCTTTTCCTCCGCACCGGCTCTCTCCTGCCCTGCATCCTAACCCACTCC
TTCTGCAACTTTGTGGGCCTCCCAAACCTGGCCTTTATGCTTTCACCCTC
CTCTCTTACGCCCTCTCCTGCCTCCGCCTTCCTCCTGTATGTGCATCGAT
GGAAGTTTCTCGCTGCTCACCTTCTAGGGATCGCCCTTTTTGTCGCACTT
TTGTTCCCATTCTCGGAGCCGAAGCTGTTCACCGAGAGAAGATTAGAAGG
GGAAAGAGGTGTGCCATTATACTGGCAATGAGAACGGCAAAAAAGGCATG
CGAGGGCGAGGGGTTTGTGGATAAATTCGTCCTTGAAAGGGAGCTCTGGA
GGAATTAATCAAAATAAAGAAATGAAATGAAAATGTCTCTATAAGTAGGC
TTCGACATATTTAGCGCTAAAGATCCCATTTGGCAAATGATGCTCGCTAT
TTTGCTTTTGATGACAGTGAATTGTGGGCGTTAATCATTTATGATACTGG
CCATGTATTCGACGCGCCCGCGCCTCATCATCATATTTGGGAGAAATGAG
ACGGATCTCGAAGGAAGTAAGTGCCCACCCAACAATTCACATGCGAGGCC
CAAGAATGTCTCTTACGTGATTGCTAGGCTCCATGATTTGTAGCATCCAT
CTGGCTTGTGTTATCCGTTGAACGTCAGGGAGCGTAATACAAATAAACAA
ATTGTTTCGTTTTGGGGGGGGAAGAGGTGGGGGGTATTTTTTCCCCAACT
TACAACCACACAAGCACTCCTCTGTATCTGCATCGTTACCTATGTACACG
TTTACATACAATTTACGAGTGAATGGCATAGCCCATGTGCGGAAAACACG
GCTTGTCGAGTTTCAAACCAGCAGCCGTGCACCAACCATCCCTCTGCTGC
GCCCCTCTTTCCACTGCGCTTCTCCATCCTCCCGGTTTAGGTGATGCGTA
CCAAGTCCTATCCTAGACTCCGATGCTTCGTATACGCCAAGAATAATGTA
TGGGTGTATGGCGGTACGCGTCGTAGCGACATACGGGACAGCTACGCACG
TTGTGCAGCCGTCCGCCAGCTGCCGCTGCCGCCCAGTCATCAAGTCTTGC
CTGTTGTCAAAGTCAATATTTTGTGCCAATTCTTGAATAGTGCCCCAATC
AGGTAAGAATGTGCCTGTTCTCTATACCAAAATTGATTTACCAGATAGCC
CATAAGAGGAGCGACAGCGAAAGAAATAAAGAAACGATTCAAGTAACATG
GCCACAGTGGTGGGCTTTAGAAAGGTCACTGCGAGGACCCAAATAAACCA
AAAAGCAACGCGCACAACACGCACTCAATTGTCGTTCACACGACATGAAG
CAGTCAGTCACTACACTGGCGGAGATGAGTCTCCAAACGTCTCCACGCCG
GAGATACACGCACGAGCGTTCGACCGACAAAAGCCCTACCTAACCTATCC
CCTTTCATTCAACTATACGTGCTTTTCATCTCCCAATTGATTGCCATATC
CCTCCGGTACAAGCATACACACTACGCTGCCTATGTGAGAAACGACAACT
ATCGATAAAAAGGGGCCAAGGCATTGATATGAGCCGCTGGCCCACTCTTT
CACGAGTGTGCTCTCCAGAGAGGAGGGGAAGTCTCACGTCCACTTCCGAG
TCGTCATATTACGCTGAAATGTAAAGTAGAAATGCTCGTCCGCTGCAAGA
AAGAGTGAGATGGTTTTAGCCCTGCCTATAAACGTGTGGTAGGAGGGGGG
GAAGGTGAAAGGGAGAAGGTGGATGCTGCAGCTCGACCATGCATGGTTAC
CCCCCGACCCATCCAGAGCCTATTTTTACCCTCTTTCTCTCGTGACACTC
GAGCTTGCCTCTTTCCCTCGCCTCTAATCTCCCTCTCATGCCCCCGTCCT
CTTTCAGATGTTTCCCATCCTCGCCCTTTCAGCCTCCACCTTTCCTTCGC
CACCCTTACCCCGCATACGCTCCTTGTGTTTGCCCTCTCAAACCTATTTT
CTACAATTTCGTAGGCATATCATAAAGCTTGGCCATATCAATGCCCTTAG
GATGGTCTATTCGTCTATTTCTCTCCCTCCCTCTCTCTCCCTCTTCCTCT
ACTTCTCACCTCTTCCCCTCCGTCGTCTTGTGGCGGCCTCGGACGCCTCC
AGCTTGCTCTCAAGAATGTCTGGATCACATGTGTACCTGT back to topCoding sequence (CDS) from alignment at chr7:19869..24358- >NO07G00030.2 ID=NO07G00030.2|Name=NO07G00030.2|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr7:19869..24358- (Nannochloropsis oceanica) ATGGTGTTCCATCCCATATTTCTCTCGCCCGCCCTGCTTCAAACCCCTGC CCTCCTCCAGTCTTCCTCCCTCAGTCTCGCCCTCATTGCGTGTCTGTCCA TGGCCGTGCTTTACGTTGCCGCGCTCTACGTCTTGCCGGCCTCTATCAGG CAACGGCACCGTGACGATGCCACCCACGTCAAGGCGCGATTCTTCTCTGT GGTGGCGGCCTGTCTGCTTTCAATACGGATCTTCTTGCTCTTCACTAATC CCGCGCCTGACGCTGTGCATCCCGTCTATCACTGGCTGGGCTTCACAGGC TGGACGAACCCTGCCATCTTTCTCCCCCTCCTGGCCATCATCTGCCTCTT CTTCGGGCCCATCGTAGTCATTTGCGCAGAGAGCTACTACGATCGTTGGT ATGAGGTAGTGATGCACCTATCCTCTTCTCCCCTCCTCTTTCGGCTGCGT CGTCGTCGTATCCCCCTGCCCTCGACCTGGTACGACTGGTGGGAGAGGAG GAGAATCGCGCACAGGCTGACCAAGGAAACGCTATGGAGAAACCTGGTGG TGGCGCCACTGACGGAGGTAGGGCATGGGAGGGTCAACACAAAGGGACAG AAATTTGAGAACTTCATTCCATCCATCGCCCGGCCTCGACTTGAACCTAT CTGCCTTCTTTTTTCAAGGTCCCTTCTTCCCTCCCTCCTTCCGCTTACAG GAAATCGTATTCCGTGCCTGCATGCTCCCTCTCCTTTACCAAGCTTCCTC CTCCCCTTCCTCCCTGGATTCCCCCCGTGCTATCCCTTTCGTGAAACTGA TCTTCTTGTCACCCCTTTTTTTTGGTCTGGCGCACGCCCACCACGCCCTG CAGCGGGTGCGAGAAGGATTGCCGCCCGCACAGGCCCTTCTCGAAGTAGC GTTGCAAGTTGCCTACACCAGCATCTTCGGCTGGCATGCAGGTAA back to top
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