NO06G04570.1, NO06G04570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04570.1
Unique NameNO06G04570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1362
Alignment locationchr6:1308081..1309558 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1308081..1309558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04570.1 vs.
Match: XP_023676506.1 (zinc finger BED domain-containing protein 1-like [Paramormyrops kingsleyae])

HSP 1 Score: 99.0 bits (245), Expect = 4.100e-17
Identity = 73/229 (31.88%), Postives = 109/229 (47.60%), Query Frame = 0 
Query:  146 LATDLHPAVQEVRQHMAQDMATRFHWD----ILRDTFAIASLLDPRFKKLADYHVPEHLVKDAWGLLRLELDKATTTLKDEGMYTDRAEQGAGGDIVVDSGDPFAAENTASRTSAVSAGDALGNGADGVPRSVLGTAREQLLNLSEVNQELADYIRMPVEPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTISNLRTRLSSKTVEMILFLRLN 371
            +AT+  P V E +  + Q ++ R   D    ++     IAS LDPR K L  +   E        L  L  D     +++E M  +     AGGD                  +AV+AG + G        S+L        + ++   E+  Y++       + PLDWWR N+  FP LA+LA++YLC+P TS   ER FSAAGL ++ LRTRL+ + V+M++FL  N
Sbjct:  389 IATNDRPRVAEFKAKVQQSLSERMEVDYNERLVSMPAVIASALDPRHKHLP-FLSREKTKAVLDKLKELCADMEHAAIEEEDMGEEEEPGAAGGD----------------DDAAVTAGPSSGASHKENAMSLLLGDDYSAADATDPQMEVDTYVKDSRPSLESNPLDWWRANQTRFPRLARLAQRYLCIPGTSVPSERVFSAAGLVVNRLRTRLTPEHVDMLVFLNKN 600
The following BLAST results are available for this feature:
BLAST of NO06G04570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_023676506.14.100e-1731.88zinc finger BED domain-containing protein 1-like [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04570NO06G04570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04570.1NO06G04570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04570.1.cds1NO06G04570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04570.1.cds2NO06G04570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04570.1 ID=NO06G04570.1|Name=NO06G04570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
ATGTCTGACATGTCCTCAGACGAAGAAGGCGTTGCTGCCGCGTCCACCAC
CAGCAGCTTGGCAGGGTCTGCTCGGGAGGCAGATGCGCGTGAGCGGGGCA
AGCGCGCCAAAGACCTCGACATCTACCCCACGGCACCACGGCAAGACAAG
GAGAAATCCTTCGTGTGGCGTTCCGTCCACATCTACAAGCCCTTCAGAAA
GGATTCAAGGGGAAACCTTTACTGCATGGCCTGCGATTCGTGGCTGAAGG
GAGCCGCGTCGCAGTGTGGCGACCACCTGAGGCATTGCCACCCGGAGGAG
TGGGCTCGCGTCAAACGCCTCAAAGCTGGAGACGAAGAGGATGACACCAT
GTCAGCCTTGTCTTCTGGGTCGAAGAAGGTGAAAGTAGTCACGCCTAGGT
CTGGGCCGAACCATCCCGGGTCGTCGGCCGAGGTGCTCGCCACGGACCTC
CACCCCGCCGTTCAGGAAGTCCGCCAGCATATGGCTCAAGACATGGCGAC
GCGCTTCCATTGGGACATTCTGCGGGACACCTTTGCAATCGCCTCCCTGC
TCGACCCCCGTTTCAAAAAGCTCGCCGATTACCATGTACCCGAGCACCTC
GTCAAGGATGCATGGGGGCTGCTTCGCCTAGAACTGGACAAGGCCACTAC
GACGCTCAAGGATGAGGGCATGTACACCGACAGGGCGGAGCAGGGCGCAG
GGGGCGACATCGTCGTGGACAGCGGGGACCCTTTCGCCGCAGAGAACACG
GCCTCCAGGACGTCGGCAGTTTCTGCCGGTGACGCCCTTGGCAACGGTGC
GGACGGTGTCCCTCGCTCCGTTTTGGGCACTGCAAGGGAGCAGCTTCTTA
ACCTTTCCGAGGTGAACCAGGAGTTGGCCGATTACATCCGCATGCCAGTC
GAGCCTTCTAGCACCTGCCCACTGGACTGGTGGCGGTGCAACAAGCGGTT
CTTTCCCGCCCTGGCGAAGCTTGCTCGGCAGTATCTGTGCGTGCCCGCAA
CCTCTGCCGGGGTGGAGCGGTTCTTTTCCGCTGCAGGCCTGACGATCAGC
AACCTTCGGACGCGCCTCAGCAGCAAGACTGTCGAGATGATTCTATTCCT
GCGGCTGAATTGGGACAACTCGCTGTACACGGTGGAGCTTGGGGGCGCAG
ATCTCGAGGAGGTCACCCGAGCGGAAGAAGGGGGGGGAGGGGGGGAAGGC
GACGCGATGACAGATGCTGCGGACGAAGGGGAGGAGGGGGGAGATCTTCT
GGATGACGATGAAGAAGGCGCCGCTCTTCAACCCATGGGCTTCGGGGAGG
ACGATGACTTCGCTTGGCTCAATGAGGACCTCTTCGACGTCGACTTTGAT
ATCGAAAGCTAA
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protein sequence of NO06G04570.1

>NO06G04570.1-protein ID=NO06G04570.1-protein|Name=NO06G04570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MSDMSSDEEGVAAASTTSSLAGSAREADARERGKRAKDLDIYPTAPRQDK
EKSFVWRSVHIYKPFRKDSRGNLYCMACDSWLKGAASQCGDHLRHCHPEE
WARVKRLKAGDEEDDTMSALSSGSKKVKVVTPRSGPNHPGSSAEVLATDL
HPAVQEVRQHMAQDMATRFHWDILRDTFAIASLLDPRFKKLADYHVPEHL
VKDAWGLLRLELDKATTTLKDEGMYTDRAEQGAGGDIVVDSGDPFAAENT
ASRTSAVSAGDALGNGADGVPRSVLGTAREQLLNLSEVNQELADYIRMPV
EPSSTCPLDWWRCNKRFFPALAKLARQYLCVPATSAGVERFFSAAGLTIS
NLRTRLSSKTVEMILFLRLNWDNSLYTVELGGADLEEVTRAEEGGGGGEG
DAMTDAADEGEEGGDLLDDDEEGAALQPMGFGEDDDFAWLNEDLFDVDFD
IES*
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mRNA from alignment at chr6:1308081..1309558+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04570.1 ID=NO06G04570.1|Name=NO06G04570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1478bp|location=Sequence derived from alignment at chr6:1308081..1309558+ (Nannochloropsis oceanica)
ATGTCTGACATGTCCTCAGACGAAGAAGGCGTTGCTGCCGCGTCCACCAC
CAGCAGCTTGGCAGGGTCTGCTCGGGAGGCAGATGCGCGTGAGCGGGGCA
AGCGCGCCAAAGACCTCGACATCTACCCCACGGCACCACGGCAAGACAAG
GAGAAATCCTTCGTGTGGCGTTCCGTCCACATCTACAAGCCCTTCAGAAA
GGATTCAAGGGGAAACCTTTACTGCATGGCCTGCGATTCGTGGCTGAAGG
GAGCCGCGTCGCAGTGTGGCGACCACCTGAGGCATTGCCACCCGGAGGAG
TGGGCTCGCGTCAAACGCCTCAAAGCTGGAGACGAAGAGGATGACACCAT
GTCAGCCTTGTCTTCTGGGTCGAAGAAGGTGCAGACCAAGCTCCATCACC
ACCAATACTGGCGGGGGGATGCCCTCCAGCGCGGGCACAAGTACCTTACA
GGCTTCTTGCTCCGCAGCCTCCGACCCTTCAACCTGCTGACAAGGTGAAA
GTAGTCACGCCTAGGTCTGGGCCGAACCATCCCGGGTCGTCGGCCGAGGT
GCTCGCCACGGACCTCCACCCCGCCGTTCAGGAAGTCCGCCAGCATATGG
CTCAAGACATGGCGACGCGCTTCCATTGGGACATTCTGCGGGACACCTTT
GCAATCGCCTCCCTGCTCGACCCCCGTTTCAAAAAGCTCGCCGATTACCA
TGTACCCGAGCACCTCGTCAAGGATGCATGGGGGCTGCTTCGCCTAGAAC
TGGACAAGGCCACTACGACGCTCAAGGATGAGGGCATGTACACCGACAGG
GCGGAGCAGGGCGCAGGGGGCGACATCGTCGTGGACAGCGGGGACCCTTT
CGCCGCAGAGAACACGGCCTCCAGGACGTCGGCAGTTTCTGCCGGTGACG
CCCTTGGCAACGGTGCGGACGGTGTCCCTCGCTCCGTTTTGGGCACTGCA
AGGGAGCAGCTTCTTAACCTTTCCGAGGTGAACCAGGAGTTGGCCGATTA
CATCCGCATGCCAGTCGAGCCTTCTAGCACCTGCCCACTGGACTGGTGGC
GGTGCAACAAGCGGTTCTTTCCCGCCCTGGCGAAGCTTGCTCGGCAGTAT
CTGTGCGTGCCCGCAACCTCTGCCGGGGTGGAGCGGTTCTTTTCCGCTGC
AGGCCTGACGATCAGCAACCTTCGGACGCGCCTCAGCAGCAAGACTGTCG
AGATGATTCTATTCCTGCGGCTGAATTGGGACAACTCGCTGTACACGGTG
GAGCTTGGGGGCGCAGATCTCGAGGAGGTCACCCGAGCGGAAGAAGGGGG
GGGAGGGGGGGAAGGCGACGCGATGACAGATGCTGCGGACGAAGGGGAGG
AGGGGGGAGATCTTCTGGATGACGATGAAGAAGGCGCCGCTCTTCAACCC
ATGGGCTTCGGGGAGGACGATGACTTCGCTTGGCTCAATGAGGACCTCTT
CGACGTCGACTTTGATATCGAAAGCTAA
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Coding sequence (CDS) from alignment at chr6:1308081..1309558+

>NO06G04570.1 ID=NO06G04570.1|Name=NO06G04570.1|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at chr6:1308081..1309558+ (Nannochloropsis oceanica)
ATGTCTGACATGTCCTCAGACGAAGAAGGCGTTGCTGCCGCGTCCACCAC
CAGCAGCTTGGCAGGGTCTGCTCGGGAGGCAGATGCGCGTGAGCGGGGCA
AGCGCGCCAAAGACCTCGACATCTACCCCACGGCACCACGGCAAGACAAG
GAGAAATCCTTCGTGTGGCGTTCCGTCCACATCTACAAGCCCTTCAGAAA
GGATTCAAGGGGAAACCTTTACTGCATGGCCTGCGATTCGTGGCTGAAGG
GAGCCGCGTCGCAGTGTGGCGACCACCTGAGGCATTGCCACCCGGAGGAG
TGGGCTCGCGTCAAACGCCTCAAAGCTGGAGACGAAGAGGATGACACCAT
GTCAGCCTTGTCTTCTGGGTCGAAGAAGGTGAAAGTAGTCACGCCTAGGT
CTGGGCCGAACCATCCCGGGTCGTCGGCCGAGGTGCTCGCCACGGACCTC
CACCCCGCCGTTCAGGAAGTCCGCCAGCATATGGCTCAAGACATGGCGAC
GCGCTTCCATTGGGACATTCTGCGGGACACCTTTGCAATCGCCTCCCTGC
TCGACCCCCGTTTCAAAAAGCTCGCCGATTACCATGTACCCGAGCACCTC
GTCAAGGATGCATGGGGGCTGCTTCGCCTAGAACTGGACAAGGCCACTAC
GACGCTCAAGGATGAGGGCATGTACACCGACAGGGCGGAGCAGGGCGCAG
GGGGCGACATCGTCGTGGACAGCGGGGACCCTTTCGCCGCAGAGAACACG
GCCTCCAGGACGTCGGCAGTTTCTGCCGGTGACGCCCTTGGCAACGGTGC
GGACGGTGTCCCTCGCTCCGTTTTGGGCACTGCAAGGGAGCAGCTTCTTA
ACCTTTCCGAGGTGAACCAGGAGTTGGCCGATTACATCCGCATGCCAGTC
GAGCCTTCTAGCACCTGCCCACTGGACTGGTGGCGGTGCAACAAGCGGTT
CTTTCCCGCCCTGGCGAAGCTTGCTCGGCAGTATCTGTGCGTGCCCGCAA
CCTCTGCCGGGGTGGAGCGGTTCTTTTCCGCTGCAGGCCTGACGATCAGC
AACCTTCGGACGCGCCTCAGCAGCAAGACTGTCGAGATGATTCTATTCCT
GCGGCTGAATTGGGACAACTCGCTGTACACGGTGGAGCTTGGGGGCGCAG
ATCTCGAGGAGGTCACCCGAGCGGAAGAAGGGGGGGGAGGGGGGGAAGGC
GACGCGATGACAGATGCTGCGGACGAAGGGGAGGAGGGGGGAGATCTTCT
GGATGACGATGAAGAAGGCGCCGCTCTTCAACCCATGGGCTTCGGGGAGG
ACGATGACTTCGCTTGGCTCAATGAGGACCTCTTCGACGTCGACTTTGAT
ATCGAAAGCTAA
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Synonyms
Publications