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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:1233561..1237399 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04410.1 vs.
Match: XP_005855412.1 (amino acid transport protein [Nannochloropsis gaditana CCMP526]; EKU20943.1 amino acid transport protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 552.0 bits (1421), Expect = 2.200e-153 Identity = 347/620 (55.97%), Postives = 407/620 (65.65%), Query Frame = 0
Query: 8 QQQSQHDGDGIGNA---TANERSSLL-----LREVSSTESQYSSLGGPATPICSPMTPAFERRGRPGSRKRPRKLQGRAALNINLLTALNGPASFAIPWAFQEAGLAAGVIGVVLVALFSYFTLWFLIRCKRHLSASGSGDAGAARGLKQQEESGDDGGADK------GKHPAMAVLAPTPLPPSQQQQQQLRRWRGLQDNDGLQQLTYAEIAALSLGAPASSLVKAATCISCLGACAAYATFIAGMLTQLFPVWEEGEVLCGLLPIFVLLSWVRGFRRLSFFNVGGNLSLVVGVLAIFYDGFTRLAASSSASSPP-----SSPVIPP------PSSSSPSF-LEARGIHLLQPQTLFLFFGPTAFLFVIHYCA----------------------------------------VPIESEAEYPEDFTQALGLSMALTAMLDIAVGSAGYIFYGGTSPLVRNPAGQVVAGCERPVCDNVLKNIEAGPLKTIIFAAFSLNLTLTYIIMLAPPREYLEEIVVGSDSLLPTKWQRNILRSLLVTFTFVVASTIHQFGLITAFVGAITDTLQGFILPPLIYAATFAACVSKCEKMLLWAMSGLGVVLMFTATSQNVGELKRLVL 562
++ S+H+ + + N + +ERS LL +R +SS ESQY+SLGGPATP CSP A + RKRPRKLQG AFQEAGLAAGV+GV+ VA FSY TL LIR KR L SG A AR +E+ D G + G + A A + S Q Q G D QL+YAE+AAL+LGAPAS LVK ATC+SCLGACAAY TF+AGML QLFP W E +L LLP FVLLSWVRGFRRLSF NV GN SLV+G++AIF DGF+RL A SS++ PP SS PP P+ SSPSF L RGIHL++PQTL LFFGPTAFLFV+HY +PIESEA+ PEDF +ALGLSM+LTA LD+A+G+AGYIFYGG SPLVR+ AGQVV GCERPVCDNVLKNI GPLKTIIFAAFS+NLTLTY+IMLAPPREY+EE +V DS++ +KWQRNI RS+LV FTF+VAS++HQFGLITAFVGAITDTLQGF+LPPLIYAATFA + K EK L+ MS LG+VLM TAT QN+ EL+ LVL
Sbjct: 2 EETSRHEEEQLKNGDTDSPSERSFLLPTALVVRSLSS-ESQYASLGGPATPSCSP---AAADKESTRLRKRPRKLQG----------------------AFQEAGLAAGVLGVLAVAFFSYTTLLLLIRAKRFL--SGGPPALEARERMGREDKRKDAGVEAVAGEKGGNGLSEAASAAVTVLSSVQDQ------AGAGPAD--LQLSYAEVAALALGAPASLLVKTATCVSCLGACAAYITFVAGMLLQLFPAWSERGILLALLPPFVLLSWVRGFRRLSFLNVLGNASLVLGIIAIFLDGFSRLVAPSSSTFPPVSSSLSSAPKPPTPTALSPAPSSPSFSLSTRGIHLVRPQTLLLFFGPTAFLFVVHYSPRPREFEHAHDLMAVFVDLLPLPETQTLPSLPFLPSALSGALPIESEAKRPEDFKRALGLSMSLTAALDVAIGAAGYIFYGGLSPLVRDQAGQVVPGCERPVCDNVLKNISPGPLKTIIFAAFSINLTLTYVIMLAPPREYVEEAMVRGDSIISSKWQRNIWRSVLVIFTFMVASSVHQFGLITAFVGAITDTLQGFVLPPLIYAATFAVWMPKAEKALMITMSTLGIVLMLTATYQNMRELENLVL 585
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04410.1 ID=NO06G04410.1|Name=NO06G04410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2073bp
CAGCTTGGCATACACGCTGTGTCTTTTTTGGAGGGATTCATTGCAGGGGG
AATGGGGAGGGATTTGAGTCTGAGGATTAACTGTCAATTCGTGACAGCTA
TCGCCGCCAGAATTGCATGCTTATCCGCGTACAAACTTCTGCACCATCAC
AAGAGAACACAAGCAAGGCAGCAACTTAAAACGTAGAGAACAACGCCAGT
TCTCGTCCTATTGTCCAACTGCCTGCCTGCCCACGTCTTTCCCTTGCTCT
CCTCCTCGCTTGCTTCAGCCGCACGGCATCGAGCCCTCAACGGAGAAACC
CGGCCATGCCGGACCAGCGCCACTACCAGCAACAGTCGCAGCACGACGGC
GATGGCATTGGCAATGCCACCGCGAACGAGCGCTCCTCCCTTCTTCTGCG
CGAGGTCTCTTCGACTGAGAGCCAGTACTCAAGTCTTGGAGGGCCGGCCA
CCCCCATCTGCTCGCCCATGACGCCCGCATTTGAAAGGAGAGGAAGACCA
GGAAGTAGGAAACGGCCGAGAAAGCTGCAGGGAAGGGCGGCCCTTAACAT
CAATCTTTTGACGGCCCTCAATGGCCCAGCGTCTTTTGCCATCCCCTGGG
CGTTTCAAGAAGCAGGGTTGGCGGCGGGTGTGATCGGCGTAGTCTTAGTC
GCCCTCTTCTCCTACTTCACCCTGTGGTTCCTCATCCGTTGCAAGCGGCA
TCTATCCGCAAGCGGCAGCGGTGATGCGGGGGCTGCTAGAGGTCTGAAGC
AGCAGGAGGAGAGTGGGGACGACGGCGGTGCTGACAAAGGGAAACACCCC
GCGATGGCGGTACTGGCGCCGACTCCCCTGCCACCATCACAGCAACAGCA
GCAGCAGTTGCGGCGATGGAGGGGGTTGCAAGATAATGACGGGCTGCAGC
AGCTGACGTATGCGGAGATCGCCGCCCTTTCCCTCGGCGCTCCTGCATCT
TCCCTGGTCAAGGCCGCCACCTGCATCTCCTGCTTGGGTGCCTGTGCTGC
CTACGCGACCTTCATCGCCGGGATGCTCACGCAGCTGTTTCCAGTCTGGG
AGGAGGGAGAGGTCCTCTGTGGTCTCCTTCCCATCTTCGTCCTCCTGTCC
TGGGTGCGGGGGTTCCGGCGCTTATCCTTTTTTAACGTTGGGGGCAATCT
TTCGCTCGTTGTCGGCGTCCTGGCCATCTTCTACGACGGGTTTACGCGGC
TTGCTGCCTCCTCTTCTGCATCCTCCCCGCCCTCCTCCCCTGTCATCCCT
CCTCCCTCCTCTTCCTCTCCCTCCTTTTTGGAAGCCCGCGGCATCCACCT
CCTCCAGCCCCAGACCCTCTTCCTTTTCTTTGGTCCCACAGCCTTCCTCT
TTGTCATCCATTACTGCGCCGTCCCCATTGAGTCCGAAGCCGAGTACCCG
GAGGACTTTACGCAGGCTCTTGGCCTTTCCATGGCCCTGACAGCAATGCT
GGACATAGCCGTCGGTTCTGCGGGCTATATTTTCTATGGTGGGACCTCTC
CCTTGGTGCGCAACCCGGCGGGACAGGTGGTGGCTGGATGTGAGCGGCCA
GTGTGCGACAATGTACTGAAAAATATCGAAGCCGGACCCCTCAAGACCAT
CATTTTCGCCGCCTTTTCCCTCAACCTCACGCTTACCTACATTATCATGC
TGGCTCCACCGCGCGAGTACCTGGAAGAGATCGTTGTTGGCAGCGACAGT
CTTCTCCCAACAAAGTGGCAACGCAACATCTTGAGGTCCCTCCTTGTCAC
ATTCACCTTTGTAGTCGCTTCGACCATCCATCAGTTCGGCCTAATCACAG
CTTTTGTGGGCGCAATAACCGACACTCTCCAAGGATTTATCCTCCCGCCT
TTGATTTATGCAGCGACATTTGCTGCTTGTGTATCTAAATGCGAGAAGAT
GCTCTTGTGGGCCATGAGTGGATTGGGCGTGGTGTTGATGTTTACTGCGA
CCTCTCAAAATGTTGGGGAGCTGAAGCGCCTGGTCCTCGACAATATTAAT
CAGAAGTTCTAAGCGGCTGAGAAGAAAATAAGACAAATATAAAAAAGAAA
TAACTGTCTGGTACTACTGTTCA back to topprotein sequence of NO06G04410.1 >NO06G04410.1-protein ID=NO06G04410.1-protein|Name=NO06G04410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MPDQRHYQQQSQHDGDGIGNATANERSSLLLREVSSTESQYSSLGGPATP
ICSPMTPAFERRGRPGSRKRPRKLQGRAALNINLLTALNGPASFAIPWAF
QEAGLAAGVIGVVLVALFSYFTLWFLIRCKRHLSASGSGDAGAARGLKQQ
EESGDDGGADKGKHPAMAVLAPTPLPPSQQQQQQLRRWRGLQDNDGLQQL
TYAEIAALSLGAPASSLVKAATCISCLGACAAYATFIAGMLTQLFPVWEE
GEVLCGLLPIFVLLSWVRGFRRLSFFNVGGNLSLVVGVLAIFYDGFTRLA
ASSSASSPPSSPVIPPPSSSSPSFLEARGIHLLQPQTLFLFFGPTAFLFV
IHYCAVPIESEAEYPEDFTQALGLSMALTAMLDIAVGSAGYIFYGGTSPL
VRNPAGQVVAGCERPVCDNVLKNIEAGPLKTIIFAAFSLNLTLTYIIMLA
PPREYLEEIVVGSDSLLPTKWQRNILRSLLVTFTFVVASTIHQFGLITAF
VGAITDTLQGFILPPLIYAATFAACVSKCEKMLLWAMSGLGVVLMFTATS
QNVGELKRLVLDNINQKF* back to topmRNA from alignment at chr6:1233561..1237399+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04410.1 ID=NO06G04410.1|Name=NO06G04410.1|organism=Nannochloropsis oceanica|type=mRNA|length=3839bp|location=Sequence derived from alignment at chr6:1233561..1237399+ (Nannochloropsis oceanica)
CAGCTTGGCATACACGCTGTGTCTTTTTTGGAGGGATTCATTGCAGGGGG
AATGGGGAGGGATTTGAGTCTGAGGATTAACTGTCAATTCGTGACAGCTA
TCGCCGCCAGAATTGCATGCTTATCCGCGTACAAACTTCTGCACCATCAC
AAGAGAACACAAGCAAGGCAGCAACTTAAAACGTAGAGAACAACGCCAGT
TCTCGTCCTATTGTCCAACTGCCTGCCTGCCCACGTCTTTCCCTTGCTCT
CCTCCTCGCTTGCTTCAGCCGCACGGCATCGAGCCCTCAACGGAGAAACC
CGGCCATGCCGGACCAGCGCCACTACCAGCAACAGTCGCAGCACGACGGC
GATGGCATTGGCAATGCCACCGCGAACGAGCGCTCCTCCCTTCTTCTGCG
CGAGGTCTCTTCGACTGAGAGCCAGGTAGGGAGGTTGGAAGAGGGAGCAT
CTGATTCCCATGTATGATTAGCTATAGACGTCGTTGCAGCGGAGCAGTGA
CTGTCAGTATGATGACAGTTTAAGCTGCTGTAGGTACTCATCATAGGCAT
GCATTCATCCTCTCTCCTCCCTTCCCCCTTTCCTCCTCTTCCCTCTCCCT
TTCACCCTGAATAGTACTCAAGTCTTGGAGGGCCGGCCACCCCCATCTGC
TCGCCCATGACGCCCGCATTTGAAAGGAGAGGAAGACCAGGAAGTAGGAA
ACGGCCGAGAAAGCTGCAGGGGTAGGAAGGGGGGGGAAAGGGGGGAAGAG
GGACAGACGGGCCATGTGAAGGGAAGGCGGGAGGTGAATGACGGTAACCG
AGGCGTCGGTGGAAGCGTATTGCCTACTCAAATTCTCACTTGTCGTTCTT
TTCTTCCTTCTTCATACCAATCTACAGAAGGGCGGCCCTTAACATCAATC
TTTTGACGGCCCTCAATGGCCCAGCGTCTTTTGCCATCCCCTGGTAGGGA
GGATGGAGGAGAGGGGAGGGAGGGAGGGAGAGAGGGAGGGGGGGAGGAAA
GGCATGCTCGTGATGCCTGCGTGCGGGAAGATCAAGGCTTATTTTCATGT
CCCCTCTTTATCTCTGGCCCTGGTAGGGCGTTTCAAGAAGCAGGGTTGGC
GGCGGGTGTGATCGGCGTAGTCTTAGTCGCCCTCTTCTCCTACTTCACCC
TGTGGTTCCTCATCCGGTGCGTCAGTGGAATGGAAGGAGGGAGGGAAGAA
GGACGGAATCTTACTTATTTATCCACTCACACACACACACCTAGTTGCAA
GCGGCATCTATCCGCAAGCGGCAGCGGTGATGCGGGGGCTGCTAGAGGTC
TGAAGCAGCAGGAGGAGAGTGGGGACGACGGCGGTGCTGACAAAGGGAAA
CACCCCGCGATGGCGGTACTGGCGCCGACTCCCCTGCCACCATCACAGCA
ACAGCAGCAGCAGTTGCGGCGATGGAGGGGGTTGCAAGATAATGACGGGC
TGCAGCAGCTGACGTATGCGGAGGTAAGAAACGAATTTCCTGCTGTGGGC
GAGGAGGGGAAAGGTAGAGGGAAAAATAAAAGGAATGACTTGAAGTGGAA
TTAGCCATTCGGGCCGAAAGAAGACGGTGTCCGTGTTGCTAATGCTTGCA
TGAGTACTTACTAAAATACATCAATACTGCCCACACTACGACATGGCGAT
ATGCATTCTTCCCGTATGTCCATTGATTCGTTTTTCCATCATCTCCCTCC
TAATCATCCTTCAAATCCTCCTACTCCTCGCTTTCCTTTCATCCTCCACC
ACCTCCACCATCACCACCATCCCTTCCATACACCCCTGCAGATCGCCGCC
CTTTCCCTCGGCGCTCCTGCATCTTCCCTGGTCAAGGCCGCCACCTGCAT
CTCCTGCTTGGGTGCCTGTGCTGCCTACGCGACCTTCATCGCCGGGATGC
TCACGCAGCTGTTTCCAGTCTGGGAGGAGGTAAGGCGGGAGGGAGGGCTG
GAAGGAGGAGATGTCCAGAAGATTGAATCTCTAAGTGTGTTTTTTTTGGG
GGGGCTACAGTCACCCATTAAATTAAACGCCCACATAACTTGTAGGGAGA
GGTCCTCTGTGGTCTCCTTCCCATCTTCGTCCTCCTGTCCTGGGTGCGGG
GGTTCCGGCGCTTATCCTTTTTTAACGTTGGGGGCAATCTTTCGCTCGTT
GTCGGTGAGGCGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGAATGAAG
GGGATGAAGGGAGGTAGAGGTAATGGCAGGAGGGAAGGGGGACGTCACGT
CCGTATCCACCTTCCGTGTATGAACATTCTCGTCCTATGCGCATGTATTT
ATCTACCCCTGCAGGCGTCCTGGCCATCTTCTACGACGGGTTTACGCGGC
TTGCTGCCTCCTCTTCTGCATCCTCCCCGCCCTCCTCCCCTGTCATCCCT
CCTCCCTCCTCTTCCTCTCCCTCCTTTTTGGAAGCCCGCGGCATCCACCT
CCTCCAGCCCCAGACCCTCTTCCTTTTCTTTGGTCCCACAGCCTTCCTCT
TTGTCATCCATTACTGTATGTTGGCTAAGCGTGGGAAGAGAGGCAGGGTG
GGAGGGAGGGGTGGAGTCGCATGAGCGTATGAATGGGGTTTCTCTCTACG
TAACCTTGCATTTTCGTCTTGCGTCATGGATTGACATTTGTACCGGTAAA
TTCCTCCTCTTCTTCCCTCTTTCTCTCCCTCCAGGCGCCGTCCCCATTGA
GTCCGAAGCCGAGTACCCGGAGGACTTTACGCAGGCTCTTGGCCTTTCCA
TGGCCCTGACAGCAATGCTGGACATAGCCGTCGGGTGAGCTAGGAAAATT
AAGAGGATGAATTACGGGGGGAAGGAAGGCCTCGGGATTATAAACGTATC
ACTCACGATTCTTACAAATATGTTCACAGTTCTGCGGGCTATATTTTCTA
TGGTGGGACCTCTCCCTTGGTGCGCAACCCGGCGGGACAGGTGGTGGCTG
GATGTGAGCGGCCAGTGTGCGACAATGGTATGTGGAAGGGTATTGACGGC
GCTGGAATTGTATATGTGTGTATATATATTACCTTGCAGCTACGTAGGGC
TTTTGTGCGCGGTTGTGTGAGTGATTGCGGCCCGGACCAACCTCACTTTT
AGCGTTCATTTTGTTATTGCGTGTAGTCTCCAACCAAAGCACTCACGCCC
ATGCACACCCTCCCGCTCTATGACTGGCTAGTACTGAAAAATATCGAAGC
CGGACCCCTCAAGACCATCATTTTCGCCGCCTTTTCCCTCAACCTCACGC
TTACCTACATTATCATGCTGGCTCCACCGCGCGAGTACCTGGAAGAGATC
GTTGTTGGCAGCGACAGGTACGATTCGCGTGGAAAGGCGGAGACTAGGTG
GGAATGCACGATAGTGAAGAAGGGATGCAGGTGAAGAATATGTGCGCGTA
ACCGCGCTAAGAACGCCGGTATCACTTACAAGCCCATGTCCCAATTCATA
CACAACGCATCGCAGTCTTCTCCCAACAAAGTGGCAACGCAACATCTTGA
GGTCCCTCCTTGTCACATTCACCTTTGTAGTCGCTTCGACCATCCATCAG
TTCGGCCTAATCACAGCTTTTGTGGGCGCAATAACCGACACTCTCCAAGG
ATTTATCCTCCCGCCTTTGATTTATGCAGCGACATTTGCTGCTTGTGTAT
CTAAATGCGAGAAGATGCTCTTGTGGGCCATGAGTGGATTGGGCGTGGTG
TTGATGTTTACTGCGACCTCTCAAAATGTTGGGGAGCTGAAGCGCCTGGT
CCTCGACAATATTAATCAGAAGTTCTAAGCGGCTGAGAAGAAAATAAGAC
AAATATAAAAAAGAAATAACTGTCTGGTACTACTGTTCA back to topCoding sequence (CDS) from alignment at chr6:1233561..1237399+ >NO06G04410.1 ID=NO06G04410.1|Name=NO06G04410.1|organism=Nannochloropsis oceanica|type=CDS|length=1707bp|location=Sequence derived from alignment at chr6:1233561..1237399+ (Nannochloropsis oceanica)
ATGCCGGACCAGCGCCACTACCAGCAACAGTCGCAGCACGACGGCGATGG
CATTGGCAATGCCACCGCGAACGAGCGCTCCTCCCTTCTTCTGCGCGAGG
TCTCTTCGACTGAGAGCCAGTACTCAAGTCTTGGAGGGCCGGCCACCCCC
ATCTGCTCGCCCATGACGCCCGCATTTGAAAGGAGAGGAAGACCAGGAAG
TAGGAAACGGCCGAGAAAGCTGCAGGGAAGGGCGGCCCTTAACATCAATC
TTTTGACGGCCCTCAATGGCCCAGCGTCTTTTGCCATCCCCTGGGCGTTT
CAAGAAGCAGGGTTGGCGGCGGGTGTGATCGGCGTAGTCTTAGTCGCCCT
CTTCTCCTACTTCACCCTGTGGTTCCTCATCCGTTGCAAGCGGCATCTAT
CCGCAAGCGGCAGCGGTGATGCGGGGGCTGCTAGAGGTCTGAAGCAGCAG
GAGGAGAGTGGGGACGACGGCGGTGCTGACAAAGGGAAACACCCCGCGAT
GGCGGTACTGGCGCCGACTCCCCTGCCACCATCACAGCAACAGCAGCAGC
AGTTGCGGCGATGGAGGGGGTTGCAAGATAATGACGGGCTGCAGCAGCTG
ACGTATGCGGAGATCGCCGCCCTTTCCCTCGGCGCTCCTGCATCTTCCCT
GGTCAAGGCCGCCACCTGCATCTCCTGCTTGGGTGCCTGTGCTGCCTACG
CGACCTTCATCGCCGGGATGCTCACGCAGCTGTTTCCAGTCTGGGAGGAG
GGAGAGGTCCTCTGTGGTCTCCTTCCCATCTTCGTCCTCCTGTCCTGGGT
GCGGGGGTTCCGGCGCTTATCCTTTTTTAACGTTGGGGGCAATCTTTCGC
TCGTTGTCGGCGTCCTGGCCATCTTCTACGACGGGTTTACGCGGCTTGCT
GCCTCCTCTTCTGCATCCTCCCCGCCCTCCTCCCCTGTCATCCCTCCTCC
CTCCTCTTCCTCTCCCTCCTTTTTGGAAGCCCGCGGCATCCACCTCCTCC
AGCCCCAGACCCTCTTCCTTTTCTTTGGTCCCACAGCCTTCCTCTTTGTC
ATCCATTACTGCGCCGTCCCCATTGAGTCCGAAGCCGAGTACCCGGAGGA
CTTTACGCAGGCTCTTGGCCTTTCCATGGCCCTGACAGCAATGCTGGACA
TAGCCGTCGGTTCTGCGGGCTATATTTTCTATGGTGGGACCTCTCCCTTG
GTGCGCAACCCGGCGGGACAGGTGGTGGCTGGATGTGAGCGGCCAGTGTG
CGACAATGTACTGAAAAATATCGAAGCCGGACCCCTCAAGACCATCATTT
TCGCCGCCTTTTCCCTCAACCTCACGCTTACCTACATTATCATGCTGGCT
CCACCGCGCGAGTACCTGGAAGAGATCGTTGTTGGCAGCGACAGTCTTCT
CCCAACAAAGTGGCAACGCAACATCTTGAGGTCCCTCCTTGTCACATTCA
CCTTTGTAGTCGCTTCGACCATCCATCAGTTCGGCCTAATCACAGCTTTT
GTGGGCGCAATAACCGACACTCTCCAAGGATTTATCCTCCCGCCTTTGAT
TTATGCAGCGACATTTGCTGCTTGTGTATCTAAATGCGAGAAGATGCTCT
TGTGGGCCATGAGTGGATTGGGCGTGGTGTTGATGTTTACTGCGACCTCT
CAAAATGTTGGGGAGCTGAAGCGCCTGGTCCTCGACAATATTAATCAGAA
GTTCTAA back to top
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