NO06G04400.1, NO06G04400.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G04400.1
Unique Name	NO06G04400.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1405
Alignment location	chr6:1231484..1233587 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:1231484..1233587 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO06G04400.1 vs.
Match: WP_010312409.1 (carbohydrate kinase [Synechococcus sp. CB0101])

HSP 1 Score: 375.9 bits (964), Expect = 1.600e-100
Identity = 200/346 (57.80%), Postives = 239/346 (69.08%), Query Frame = 0

Query:   84 AAQASPKVLCYGEALVDRLGPLGGDPATDLPV--DDRLGGAPANVACGLSRLGTPAAFLGRLGEDEIGRQFKKVFQQRHVNTQALQWDPSRPSRIVLVKRDVCGDREFGGFTGDAANSGFADQGVDPLALLPALPSFLPAAEWLLVGTLPLGSALSAEALRAAVRWAGQAGVRLALDINWRPTFWEGHSQPSEGPSAMAQAAIRPLLQQADLIKFAKEEAEWLFDGETDPSSISEALPHKPAVLVTDGGGMLRWTMGGGGRERGRVGEMEAFRVNAVDTTGAGDAFVAGLLHGLVADPSVLEGGGGGGKVEEMVRFACGCGALVCQGAGAIDPQPTVEEVQAFLVE 428
            AA  +P+V+C GEALVDRLGPLGGDP T  P   DDRLGGAPANVAC L+RLGTP+AF+GRLG D IG  F+++ ++R V+   LQ DP  PSR+VLV+RD  GDR FGGF+GD  + GFADQ +    +  +LP  L  A WL +GT+PL SALSAEAL AAV+ A  AGV +ALD+NWRPTFW+  +    GP+  A AAIRPLL+QA LIK A EEA+WLF G  DP  I   LP  PAV+VTDGG  + W  G         G M A+ V  VD+TGAGDAF+AGLLH L   P +L+GG       E VRFA  CGALVC GAGAIDPQPT E+ +AFL +
Sbjct:    2 AAGPTPQVICLGEALVDRLGPLGGDPFTAGPEQSDDRLGGAPANVACALARLGTPSAFVGRLGSDAIGAAFQQLMRERGVDLSGLQRDPIHPSRVVLVRRDASGDRSFGGFSGDQGD-GFADQALQASGVQASLPPLLAGARWLQIGTIPLASALSAEALVAAVQLAVDAGVAIALDVNWRPTFWDVSAPADAGPTPAAVAAIRPLLEQAGLIKLAAEEAQWLF-GSRDPVVIRAGLPQHPAVVVTDGGAQVAWCFGSSS------GVMPAYPVAVVDSTGAGDAFLAGLLHQLCLQPQLLDGGSA-----EAVRFASACGALVCSGAGAIDPQPTHEQAEAFLAK 334

The following BLAST results are available for this feature:

BLAST of NO06G04400.1 vs.

BLAST of NO06G04400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
WP_010312409.1	1.600e-100	57.80	carbohydrate kinase [Synechococcus sp. CB0101]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G04400	NO06G04400	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G04400.1	NO06G04400.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G04400.1.cds1	NO06G04400.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04400.1.cds2	NO06G04400.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04400.1.cds3	NO06G04400.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04400.1.cds4	NO06G04400.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04400.1.cds5	NO06G04400.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04400.1.cds6	NO06G04400.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:1231484..1233587-
coding sequence from alignment at chr6:1231484..1233587-

mRNA sequence

>NO06G04400.1 ID=NO06G04400.1|Name=NO06G04400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1405bp
AAAAGACACAGCGTGTATGCCAAGCTGCACGATGACGGTAACGACAACGA
TACCGCTAAGAAGACGGCAAAACGGGACGTTGACGTCTCTAAATCGCGGG
CAACAACCAACGGCCCTCTCAAAGCTACTGCTGCTCACCCTCCTCCTCCT
GCCTTCGCTTGAGGCTTTCATCCCGTCTCGCCTTTCCTCCTCCTCCACCT
CCTCGTCCTCTACATCCGCCTCTCCCTTCTCCTTCCTTCGTTTCCGCCCC
AGCCTGAGCATGTCGGCAGCTCAAGCTTCCCCCAAGGTGCTGTGCTATGG
CGAGGCCCTTGTCGATCGCTTGGGCCCGCTGGGAGGAGATCCTGCGACTG
ACTTGCCCGTGGACGATCGCTTGGGTGGCGCGCCTGCGAACGTGGCTTGT
GGATTATCGCGGCTGGGGACGCCGGCGGCCTTCCTAGGTCGGTTGGGCGA
GGACGAAATTGGCCGGCAGTTCAAGAAGGTCTTCCAGCAACGACATGTCA
ACACCCAAGCCTTGCAGTGGGACCCCTCCCGGCCATCGCGCATCGTCCTT
GTCAAGCGCGACGTCTGCGGAGACAGAGAGTTCGGTGGCTTTACCGGTGA
CGCTGCCAACTCAGGGTTCGCCGACCAGGGCGTGGACCCCCTCGCCCTCC
TTCCCGCCCTCCCCTCTTTCCTCCCGGCAGCGGAATGGCTGTTGGTGGGC
ACCTTGCCCTTGGGAAGCGCCTTGTCAGCCGAGGCCTTGCGGGCCGCGGT
CAGGTGGGCGGGACAAGCAGGCGTGCGCTTGGCTCTAGACATTAACTGGC
GCCCCACGTTCTGGGAGGGTCACAGTCAACCCTCAGAGGGACCCTCGGCG
ATGGCCCAAGCCGCCATCCGGCCGCTCTTGCAACAAGCCGACCTGATTAA
GTTCGCTAAGGAAGAGGCAGAATGGCTCTTTGACGGGGAGACCGATCCCA
GCAGCATAAGTGAGGCCCTGCCGCACAAGCCGGCGGTGCTGGTGACGGAC
GGAGGGGGGATGCTCAGGTGGACCATGGGTGGGGGAGGGAGGGAAAGAGG
GAGGGTGGGGGAGATGGAGGCCTTTCGGGTGAATGCGGTAGACACCACGG
GGGCAGGCGATGCCTTCGTGGCGGGATTGTTGCATGGCTTGGTCGCAGAC
CCGAGTGTGTTGGAGGGAGGGGGAGGGGGAGGGAAGGTAGAGGAGATGGT
CCGGTTTGCGTGTGGGTGTGGGGCGCTGGTGTGCCAGGGGGCGGGGGCAA
TTGACCCTCAGCCGACGGTGGAGGAGGTGCAGGCGTTCTTGGTGGAGGCG
GGCCGGGAGCAATGAGGAGGATGGACGAGGGGGAGGGAAAGGGGAAAGAG
AGGAGATAGTGAGTGCCACGAAATGTTTATTGTGTGGCGTGTGTGTCCTA
ACCCT

protein sequence of NO06G04400.1

>NO06G04400.1-protein ID=NO06G04400.1-protein|Name=NO06G04400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MPSCTMTVTTTIPLRRRQNGTLTSLNRGQQPTALSKLLLLTLLLLPSLEA
FIPSRLSSSSTSSSSTSASPFSFLRFRPSLSMSAAQASPKVLCYGEALVD
RLGPLGGDPATDLPVDDRLGGAPANVACGLSRLGTPAAFLGRLGEDEIGR
QFKKVFQQRHVNTQALQWDPSRPSRIVLVKRDVCGDREFGGFTGDAANSG
FADQGVDPLALLPALPSFLPAAEWLLVGTLPLGSALSAEALRAAVRWAGQ
AGVRLALDINWRPTFWEGHSQPSEGPSAMAQAAIRPLLQQADLIKFAKEE
AEWLFDGETDPSSISEALPHKPAVLVTDGGGMLRWTMGGGGRERGRVGEM
EAFRVNAVDTTGAGDAFVAGLLHGLVADPSVLEGGGGGGKVEEMVRFACG
CGALVCQGAGAIDPQPTVEEVQAFLVEAGREQ*

mRNA from alignment at chr6:1231484..1233587-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G04400.1 ID=NO06G04400.1|Name=NO06G04400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2104bp|location=Sequence derived from alignment at chr6:1231484..1233587- (Nannochloropsis oceanica)
AAAAGACACAGCGTGTATGCCAAGCTGCACGATGACGGTAACGACAACGA
TACCGCTAAGAAGACGGCAAAACGGGACGTTGACGTCTCTAAATCGCGGG
CAACAACCAACGGCCCTCTCAAAGCTACTGCTGCTCACCCTCCTCCTCCT
GCCTTCGCTTGAGGTAACGTAATTCCCCTGTCTACGTGTCCGCTCTCTCG
CCGCCTGATCACCGGCATATTGAATATCGCATCTCGTTCTGGGATTTTAC
CTGTTACATAGGCTTTCATCCCGTCTCGCCTTTCCTCCTCCTCCACCTCC
TCGTCCTCTACATCCGCCTCTCCCTTCTCCTTCCTTCGTTTCCGCCCCAG
CCTGAGCATGTCGGCAGCTCAAGCTTCCCCCAAGGTGCTGTGCTATGGCG
AGGCCCTTGTCGATCGCTTGGGCCCGCTGGGAGGAGATCCTGCGACTGAC
TTGCCCGTGGTACGTCCCTTTCTATTTCACTTTGCGCTTCCCTCCCTCCT
CTCCTTCCCCCTCACCCGCCCTATCAGTCTCCAAACCCTGCGATCATTTG
CAATTTGAATCCCACGGCCTTTCCCCCCCTTTTATTTTTGTCTATAGGAC
GATCGCTTGGGTGGCGCGCCTGCGAACGTGGCTTGTGGATTATCGCGGCT
GGGGACGCCGGCGGCCTTCCTAGGTCGGTTGGGCGAGGACGAAATTGGCC
GGCAGTTCAAGAAGGTCTTCCAGGTGCGGAGAGAGGGAACGAGGGATTGT
GGAAAGGAGGGAAGGAGGGAGAAACGAAGTGGGAGCAGTCTTCCTGGAGA
ACGCGGGCCCGGTTGTCTCTCTTCGGCAACACGTGCATCCATGAAGCCAC
CCTCCTTCCCTCCCTCCTTCCTTCCCTCCTTCCCTCCCTTCCTTCCAGCA
ACGACATGTCAACACCCAAGCCTTGCAGTGGGACCCCTCCCGGCCATCGC
GCATCGTCCTTGTCAAGCGCGACGTCTGCGGAGACAGAGAGTTCGGTGGC
TTTACCGGTGACGCTGCCAACTCAGGGTTCGCCGACCAGGGCGTGGACCC
CCTCGCCCTCCTTCCCGCCCTCCCCTCTTTCCTCCCGGCAGCGGAATGGC
TGTTGGTGGGCACCTTGCCCTTGGGAAGCGCCTTGTCAGCCGAGGCCTTG
CGGGTAGGTCAGGGTGTGGAGGAGGTAGCAGGAACACTCCCAGGGAGAGC
GAGGACCGTGGCTAGACGCACAGATCACTAACCTTCCCTCCCTCCGTGCC
TCCCTCCCTTCTTCCCCCAGGCCGCGGTCAGGTGGGCGGGACAAGCAGGC
GTGCGCTTGGCTCTAGACATTAACTGGCGCCCCACGTTCTGGGAGGGTCA
CAGTCAACCCTCAGAGGGACCCTCGGCGATGGTAGGGAGGGAGGGATGGG
CGGAGGGAGGGAGGGGCGGAGGACAATCTGGATGGGGAGTGGAAATAGGG
GCTTTCTCGTGACACTGCTAGTATGTGTACACCCTTAACGCCCCCTCTCC
ACCCCCACCTTCCCTTTCTCGTTCCTTCCCTCCTCCCTCACCTTCTCCTT
AGGCCCAAGCCGCCATCCGGCCGCTCTTGCAACAAGCCGACCTGATTAAG
TTCGCTAAGGAAGAGGCAGAATGGCTCTTTGACGGGGAGACCGATCCCAG
CAGCATAAGTGAGGCCCTGCCGCACAAGCCGGCGGTGCTGGTGACGGACG
GAGGGGGGATGCTCAGGTGGACCATGGGTGGGGGAGGGAGGGAAAGAGGG
AGGGTGGGGGAGATGGAGGCCTTTCGGGTGAATGCGGTAGACACCACGGG
GGCAGGCGATGCCTTCGTGGCGGGATTGTTGCATGGCTTGGTCGCAGACC
CGAGTGTGTTGGAGGGAGGGGGAGGGGGAGGGAAGGTAGAGGAGATGGTC
CGGTTTGCGTGTGGGTGTGGGGCGCTGGTGTGCCAGGGGGCGGGGGCAAT
TGACCCTCAGCCGACGGTGGAGGAGGTGCAGGCGTTCTTGGTGGAGGCGG
GCCGGGAGCAATGAGGAGGATGGACGAGGGGGAGGGAAAGGGGAAAGAGA
GGAGATAGTGAGTGCCACGAAATGTTTATTGTGTGGCGTGTGTGTCCTAA
CCCT

Coding sequence (CDS) from alignment at chr6:1231484..1233587-

>NO06G04400.1 ID=NO06G04400.1|Name=NO06G04400.1|organism=Nannochloropsis oceanica|type=CDS|length=1299bp|location=Sequence derived from alignment at chr6:1231484..1233587- (Nannochloropsis oceanica)
ATGCCAAGCTGCACGATGACGGTAACGACAACGATACCGCTAAGAAGACG
GCAAAACGGGACGTTGACGTCTCTAAATCGCGGGCAACAACCAACGGCCC
TCTCAAAGCTACTGCTGCTCACCCTCCTCCTCCTGCCTTCGCTTGAGGCT
TTCATCCCGTCTCGCCTTTCCTCCTCCTCCACCTCCTCGTCCTCTACATC
CGCCTCTCCCTTCTCCTTCCTTCGTTTCCGCCCCAGCCTGAGCATGTCGG
CAGCTCAAGCTTCCCCCAAGGTGCTGTGCTATGGCGAGGCCCTTGTCGAT
CGCTTGGGCCCGCTGGGAGGAGATCCTGCGACTGACTTGCCCGTGGACGA
TCGCTTGGGTGGCGCGCCTGCGAACGTGGCTTGTGGATTATCGCGGCTGG
GGACGCCGGCGGCCTTCCTAGGTCGGTTGGGCGAGGACGAAATTGGCCGG
CAGTTCAAGAAGGTCTTCCAGCAACGACATGTCAACACCCAAGCCTTGCA
GTGGGACCCCTCCCGGCCATCGCGCATCGTCCTTGTCAAGCGCGACGTCT
GCGGAGACAGAGAGTTCGGTGGCTTTACCGGTGACGCTGCCAACTCAGGG
TTCGCCGACCAGGGCGTGGACCCCCTCGCCCTCCTTCCCGCCCTCCCCTC
TTTCCTCCCGGCAGCGGAATGGCTGTTGGTGGGCACCTTGCCCTTGGGAA
GCGCCTTGTCAGCCGAGGCCTTGCGGGCCGCGGTCAGGTGGGCGGGACAA
GCAGGCGTGCGCTTGGCTCTAGACATTAACTGGCGCCCCACGTTCTGGGA
GGGTCACAGTCAACCCTCAGAGGGACCCTCGGCGATGGCCCAAGCCGCCA
TCCGGCCGCTCTTGCAACAAGCCGACCTGATTAAGTTCGCTAAGGAAGAG
GCAGAATGGCTCTTTGACGGGGAGACCGATCCCAGCAGCATAAGTGAGGC
CCTGCCGCACAAGCCGGCGGTGCTGGTGACGGACGGAGGGGGGATGCTCA
GGTGGACCATGGGTGGGGGAGGGAGGGAAAGAGGGAGGGTGGGGGAGATG
GAGGCCTTTCGGGTGAATGCGGTAGACACCACGGGGGCAGGCGATGCCTT
CGTGGCGGGATTGTTGCATGGCTTGGTCGCAGACCCGAGTGTGTTGGAGG
GAGGGGGAGGGGGAGGGAAGGTAGAGGAGATGGTCCGGTTTGCGTGTGGG
TGTGGGGCGCTGGTGTGCCAGGGGGCGGGGGCAATTGACCCTCAGCCGAC
GGTGGAGGAGGTGCAGGCGTTCTTGGTGGAGGCGGGCCGGGAGCAATGA

Synonyms

Publications