NO06G04380.1, NO06G04380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04380.1
Unique NameNO06G04380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1323
Alignment locationchr6:1228281..1229928 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1228281..1229928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04380.1 vs.
Match: XP_005854764.1 (short chain dehydrogenase [Nannochloropsis gaditana CCMP526]; XP_005855408.1 short chain dehydrogenase [Nannochloropsis gaditana CCMP526]; EKU20939.1 short chain dehydrogenase [Nannochloropsis gaditana CCMP526]; EKU21591.1 short chain dehydrogenase [Nannochloropsis gaditana CCMP526]; EWM26458.1 short chain dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 444.9 bits (1143), Expect = 1.900e-121
Identity = 227/261 (86.97%), Postives = 245/261 (93.87%), Query Frame = 0 
Query:   33 MTVGKYLIIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLTDLASSLHAPADTNPPTHSGVEGTVGFTDVDVTDTIALEKAIKSMGPLNGLAYCVGSINLKPLKATTTNDFIEAFKLNTVGAATAIRAALPGLMAQHKATGEAGSVVLFSSIAVQQGFPNHAIISTSKGAIEGLTRALAAELAPAIRVNAVAPSLTDTPLAQVLTRSAPMKEAIAKAHPIPRLGKGDDAAAAAAFLLDNNDSSWVTGQILGVDGGRSVVRK 294
            MT GKYL+IGGTGGIGRMLANRLVMKYHKVHLISRHQDQL  LASSLHAP DT   TH+GVEGTVGFTDVDVTDT ALEKAIK MGPLNGLAYCVGSINLKPLKATT++DF++AF LNT+GAATAIRAALPGL AQ+K +GEAGSVVLFSS+AVQQGFPNHAIIS  KG +EGLTRALAAELAP++RVNAVAPSLTDTPLAQVLTRS PMKEAIAKAHPIPRLG+GDDAAAAAAFLLDN++SSW+TGQI+GVDGGRSVVRK
Sbjct:    1 MTAGKYLVIGGTGGIGRMLANRLVMKYHKVHLISRHQDQLNHLASSLHAPGDTG--THTGVEGTVGFTDVDVTDTAALEKAIKGMGPLNGLAYCVGSINLKPLKATTSDDFLQAFMLNTLGAATAIRAALPGLSAQYKKSGEAGSVVLFSSVAVQQGFPNHAIISACKGGVEGLTRALAAELAPSVRVNAVAPSLTDTPLAQVLTRSQPMKEAIAKAHPIPRLGRGDDAAAAAAFLLDNSESSWITGQIVGVDGGRSVVRK 259
The following BLAST results are available for this feature:
BLAST of NO06G04380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854764.11.900e-12186.97short chain dehydrogenase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04380NO06G04380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04380.1NO06G04380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04380.1.cds1NO06G04380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04380.1.cds2NO06G04380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04380.1 ID=NO06G04380.1|Name=NO06G04380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp
GTGTACTTTGCCGCTCTCTGTATTTTTTTTCTATTTTCTTTTCCTTTCTC
CCAGAAGTTGTGTCAAGCAAATATTGGTATTCAGCTTTCGTGCATTTTTG
CTTTGCAGGTTGCGTCTCACAGCCACATTCGTGCTGCGGCTCGGCTCATC
GCGTCGCTGTTGGACTCGCCAAAAGGCCGTAAAAAAAAATAATGAAGTAA
ATCTATCTGACGCGCCATCCTCTCCTCGAGTTTGCCTGCTTGCATACTCT
CTGTCTGTTTGTTGTGAAGTAATGCCCCGGAGGCCTTGTCTGTTCTAGGA
TGGCGTGAGTGGAATTGCACCAGAAGCGAGCCGTCAACAAGTCTTGGGCC
CTTCAAAACACATGCGTATGCGTCGAAGACCTCCCACGCCCCCCGTCACC
TCATTCCGCCACATACCGCTTCACTCACAGCCCCAGCAAGACTCAACTAG
TAAAGGCATGACAGTGGGGAAGTATCTCATCATTGGCGGGACGGGTGGCA
TAGGACGGATGCTGGCCAACCGCTTGGTCATGAAGTATCACAAGGTGCAC
CTCATCTCCCGGCACCAAGACCAGCTTACCGACCTGGCGTCCTCACTGCA
CGCCCCCGCCGACACCAACCCCCCCACCCATAGCGGGGTGGAGGGCACCG
TGGGCTTCACCGACGTGGACGTGACCGACACAATCGCCCTGGAGAAAGCC
ATTAAGAGCATGGGTCCCCTAAACGGGCTCGCCTACTGCGTTGGCAGCAT
AAATTTGAAGCCTCTCAAGGCCACTACCACCAACGACTTCATCGAAGCAT
TTAAACTTAACACCGTTGGGGCCGCCACCGCAATCCGCGCCGCCCTTCCC
GGTCTCATGGCCCAGCACAAGGCAACAGGAGAGGCAGGGAGCGTCGTCCT
CTTCTCCTCCATCGCCGTGCAGCAAGGCTTCCCGAACCACGCCATCATTA
GCACCTCCAAAGGAGCGATCGAAGGGCTCACCCGGGCGCTAGCAGCTGAG
CTTGCCCCCGCCATCCGGGTCAATGCCGTGGCTCCCTCCCTGACCGATAC
ACCACTTGCGCAGGTGTTGACGAGGTCGGCGCCCATGAAGGAAGCGATTG
CAAAGGCGCACCCCATCCCGAGGCTTGGCAAGGGGGATGACGCTGCAGCA
GCCGCTGCCTTCTTGTTGGACAATAATGACTCGTCTTGGGTGACGGGGCA
AATCCTCGGGGTGGATGGGGGGAGGTCCGTGGTGAGGAAGTAAAAAGGGG
GGGGGGGTCGCGGAGGGCGGTATAGGGAATCAGGAGTCACGAGCTACGGG
TGGCTCGAAACGAATGAGGGGAG
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protein sequence of NO06G04380.1

>NO06G04380.1-protein ID=NO06G04380.1-protein|Name=NO06G04380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MRMRRRPPTPPVTSFRHIPLHSQPQQDSTSKGMTVGKYLIIGGTGGIGRM
LANRLVMKYHKVHLISRHQDQLTDLASSLHAPADTNPPTHSGVEGTVGFT
DVDVTDTIALEKAIKSMGPLNGLAYCVGSINLKPLKATTTNDFIEAFKLN
TVGAATAIRAALPGLMAQHKATGEAGSVVLFSSIAVQQGFPNHAIISTSK
GAIEGLTRALAAELAPAIRVNAVAPSLTDTPLAQVLTRSAPMKEAIAKAH
PIPRLGKGDDAAAAAAFLLDNNDSSWVTGQILGVDGGRSVVRK*
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mRNA from alignment at chr6:1228281..1229928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04380.1 ID=NO06G04380.1|Name=NO06G04380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp|location=Sequence derived from alignment at chr6:1228281..1229928+ (Nannochloropsis oceanica)
GTGTACTTTGCCGCTCTCTGTATTTTTTTTCTATTTTCTTTTCCTTTCTC
CCAGAAGTTGTGTCAAGCAAATATTGGTATTCAGCTTTCGTGCATTTTTG
CTTTGCAGGTTGCGTCTCACAGCCACATTCGTGCTGCGGCTCGGCTCATC
GCGTCGCTGTTGGACTCGCCAAAAGGCCGTAAAAAAAAATAATGAAGTAA
ATCTATCTGACGCGCCATCCTCTCCTCGAGTTTGCCTGCTTGCATACTCT
CTGTCTGTTTGTTGTGAAGTAATGCCCCGGAGGCCTTGTCTGTTCTAGGA
TGGCGTGAGTGGAATTGCACCAGAAGCGAGCCGTCAACAAGTCTTGGGCC
CTTCAAAACACATGCGTATGCGTCGAAGACCTCCCACGCCCCCCGTCACC
TCATTCCGCCACATACCGCTTCACTCACAGCCCCAGCAAGACTCAACTAG
TAAAGGCATGACAGTGGGGAAGTATCTCATCATTGGCGGGACGGGTGGCA
TAGGACGGATGCTGGCCAACCGCTTGGTCATGAAGTATCACAAGGTGAGC
CGGCGAGGCGGGGGAGAGGAGGGGAAGGACGGAAAGAGGGGTAATGAGTG
TGCTAGCGGACGTATGGATTAGCAAACTCGGAGGGATACCACATAGGGTG
CTAGAAAGTATTGAAAGGACGATTACTTGTCGAGCTTGTAAGTCCGAGTA
TGGCGGAAGACGTAGGATTTGGAGCAACAATGGGTGGAGGACACGAGTGG
ATCTCACTCCAAGCGCTCACAGGAGATGCTCTGTCCCTCTGCAATCTACA
TTACCGAACCACACATTTTCAATCGATCATAACCCTTTGATTCACATTCT
TCTTTCTCCTAAATCCTAGGTGCACCTCATCTCCCGGCACCAAGACCAGC
TTACCGACCTGGCGTCCTCACTGCACGCCCCCGCCGACACCAACCCCCCC
ACCCATAGCGGGGTGGAGGGCACCGTGGGCTTCACCGACGTGGACGTGAC
CGACACAATCGCCCTGGAGAAAGCCATTAAGAGCATGGGTCCCCTAAACG
GGCTCGCCTACTGCGTTGGCAGCATAAATTTGAAGCCTCTCAAGGCCACT
ACCACCAACGACTTCATCGAAGCATTTAAACTTAACACCGTTGGGGCCGC
CACCGCAATCCGCGCCGCCCTTCCCGGTCTCATGGCCCAGCACAAGGCAA
CAGGAGAGGCAGGGAGCGTCGTCCTCTTCTCCTCCATCGCCGTGCAGCAA
GGCTTCCCGAACCACGCCATCATTAGCACCTCCAAAGGAGCGATCGAAGG
GCTCACCCGGGCGCTAGCAGCTGAGCTTGCCCCCGCCATCCGGGTCAATG
CCGTGGCTCCCTCCCTGACCGATACACCACTTGCGCAGGTGTTGACGAGG
TCGGCGCCCATGAAGGAAGCGATTGCAAAGGCGCACCCCATCCCGAGGCT
TGGCAAGGGGGATGACGCTGCAGCAGCCGCTGCCTTCTTGTTGGACAATA
ATGACTCGTCTTGGGTGACGGGGCAAATCCTCGGGGTGGATGGGGGGAGG
TCCGTGGTGAGGAAGTAAAAAGGGGGGGGGGGTCGCGGAGGGCGGTATAG
GGAATCAGGAGTCACGAGCTACGGGTGGCTCGAAACGAATGAGGGGAG
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Coding sequence (CDS) from alignment at chr6:1228281..1229928+

>NO06G04380.1 ID=NO06G04380.1|Name=NO06G04380.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr6:1228281..1229928+ (Nannochloropsis oceanica)
ATGCGTATGCGTCGAAGACCTCCCACGCCCCCCGTCACCTCATTCCGCCA
CATACCGCTTCACTCACAGCCCCAGCAAGACTCAACTAGTAAAGGCATGA
CAGTGGGGAAGTATCTCATCATTGGCGGGACGGGTGGCATAGGACGGATG
CTGGCCAACCGCTTGGTCATGAAGTATCACAAGGTGCACCTCATCTCCCG
GCACCAAGACCAGCTTACCGACCTGGCGTCCTCACTGCACGCCCCCGCCG
ACACCAACCCCCCCACCCATAGCGGGGTGGAGGGCACCGTGGGCTTCACC
GACGTGGACGTGACCGACACAATCGCCCTGGAGAAAGCCATTAAGAGCAT
GGGTCCCCTAAACGGGCTCGCCTACTGCGTTGGCAGCATAAATTTGAAGC
CTCTCAAGGCCACTACCACCAACGACTTCATCGAAGCATTTAAACTTAAC
ACCGTTGGGGCCGCCACCGCAATCCGCGCCGCCCTTCCCGGTCTCATGGC
CCAGCACAAGGCAACAGGAGAGGCAGGGAGCGTCGTCCTCTTCTCCTCCA
TCGCCGTGCAGCAAGGCTTCCCGAACCACGCCATCATTAGCACCTCCAAA
GGAGCGATCGAAGGGCTCACCCGGGCGCTAGCAGCTGAGCTTGCCCCCGC
CATCCGGGTCAATGCCGTGGCTCCCTCCCTGACCGATACACCACTTGCGC
AGGTGTTGACGAGGTCGGCGCCCATGAAGGAAGCGATTGCAAAGGCGCAC
CCCATCCCGAGGCTTGGCAAGGGGGATGACGCTGCAGCAGCCGCTGCCTT
CTTGTTGGACAATAATGACTCGTCTTGGGTGACGGGGCAAATCCTCGGGG
TGGATGGGGGGAGGTCCGTGGTGAGGAAGTAA
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Synonyms
Publications