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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1126890..1131121 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04040.1 vs.
Match: XP_005855864.1 (hypothetical protein NGA_0525000 [Nannochloropsis gaditana CCMP526]; EKU20489.1 hypothetical protein NGA_0525000 [Nannochloropsis gaditana CCMP526]; EWM26401.1 hypothetical protein Naga_100365g4 [Nannochloropsis gaditana]) HSP 1 Score: 364.0 bits (933), Expect = 4.200e-97 Identity = 180/258 (69.77%), Postives = 205/258 (79.46%), Query Frame = 0
Query: 23 LVLSLTAISATASVLPRSRGTSRHHLPSAFTFLGLPIPALPNIEMPSSPIEVKLVYQRVIDPIHYGDYCGPTPEITPSTGCQHPLNLAALDDTDEVCRLHDHFYCKCDSIYARQGKTAPSSALIATRSVQSGFRKTYLANLDRDYYLCVHEADQEMLGHFDTLVSEGRLPAKYWDPVTRWKFDSLLDVFRRNMAVDAEILDLQAQGGMERGRAYWFGEDEKKGEEGMVQGSSHESRMINGKSKGLKSSSQVVTATTSS 281
L +SL + A ++ S G R P AF+FLGL +PA+P+++MP+SPIEVKLVYQRV+DPIHYGDYCGPTPEITP TGC+HPLNLAALDDTDE+CRLHDHFYCKCDS+Y RQGK+ PSSALIATRS+ + FRKTY ANLD+DYY+CVHEADQEMLG FDTLVSEGRLP YWDP+TRWKFDSLLDVFRRNMAVDAEILDLQAQ G ERGRAYWF ED + QG + + KG SQVVTA +S
Sbjct: 7 LFISLVPMMARST----SMGDRRRRCP-AFSFLGLTLPAIPDLQMPTSPIEVKLVYQRVLDPIHYGDYCGPTPEITPDTGCRHPLNLAALDDTDEICRLHDHFYCKCDSVYHRQGKSPPSSALIATRSLSADFRKTYFANLDKDYYMCVHEADQEMLGKFDTLVSEGRLPPSYWDPLTRWKFDSLLDVFRRNMAVDAEILDLQAQDGRERGRAYWFEED--ADAHAVKQGPGDDVPPARSEGKG----SQVVTAAATS 253
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04040.1 ID=NO06G04040.1|Name=NO06G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=3158bp GGGAGGAGGAGGGGAGGGGGAGATTGTAGTTGTAGATTTGTACTTGTGAT TTTAGGGTGGACGATGGAATGAAAGAATAGTTTATTATTGACAAAAATAC CACCAAGAAAAAGATCAAGAACGAAGAGAATAACAGCAGGACGAACACCA ACACACGATTGCGACCCGCGTGGAGAGGTACAGGATCATGGCTCCATCGT TTCCTCTGCCTCTCCATCCCGTTCATTATGCCACAATTATGTGGTATGTC TTCGAGAGGGGGGGGGGGGGGAATGCGAACATACATTCAGACTGGGTCAC ATCCCTTCCATGTGAAGGCAAATCATGAATGAACTGTGCGATACATGTTT AGAAGAAAGGGAAAGACACGTACCCCAATCCCCCATCCCCCCCTCCCTCC TTGTTGCTTGATTCCGTGACTCTTTGTTTGCTCTTATTGCAGTCTTTCAG TTTTCTTCCACTTGATTTAAAGCCATCATTCTATTCATTTGATCCATGCT AAATCTTGCTCTCCTCAGAGTCTTTGTGTATTAAATGTGAATATCTACGT ATGTACACTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCTCCCT CATCCCAATGACCCATCATGCCCCAGCCCCAAGCAGCTCCCGCACGTCTG CCACACCATCTGCCTCGCGAATGGGATGTACGATAAAACATAGTAACACA AGGACATAAACTGGATAATGATCATGATCACTAACAAGGCTCCCTGACCT GGTACATCCGAGAAGGCAACTGCGAGGGTCAACACCAACGTCAGCACATA CACCGCCGTACACAGGGCCCGAGTCGGATGGAACATGCTTTTCGCCTGTG CAAATGGCCCAGATAAGAAGCACGACCCTGCGAGGGAAATGAGATTTCCT AGGGTGTACATGACGGCGAAAGGCCCGGGACTGCCCGTCAGGAGCTTGGT GAACCGGAAGAACGAGCCCACCTCGAGGATGAGACCCAGAACGAAACAGC AGAGGCAGCCAAAAATGCGATGTTGCCAAGTCAAGGAAGGACACCACCAG CACATGTCTTCTTCCATTTGTTCACACCATGTCTTGGGTCGGGCTTCTAC TCCCAGGAGGCGGCGGGCCGAGTCCATGAAGGAAGGAGACGAGGAGGCGA AGGCGGCTTGGGCGGAGGAAGTGGAAGAGTGGGAGGCACCACGGCCAGGA TTTAGGCCAGCTTCTAGGTTCATTGGGTGGAAGCACGAAGGTACACTGTG GCGGGGGCTGGGTGTTGTGAGAGGTTCATGTAAGTTGATGGAATGAAGGG GGGAGGCGGCATGCTGCTCAGATGCGATGCTGTTCAAATAGGCAGACAGA ACGTTAAGACCTGGACGGGCATTCATGGAGGCATAAACTTAGAGTTTTGT TGTCAGCGTGATTGGTAGCGTGTGGGCGGTGTGATTTTGAGTGGGTAGGG GCTTAAGGCACGGGCTGCTGTGGGCACTTGATTATGATAATGATGACGGT GGTAGTATTTCTTTTCAAGCCGGAGCGTCTGTGGTGGAACAAAAAAGCAC TGGCCACCATGCCACCCTCTCATGAAGAACATATTGGCTCTGTTGTGTGA TGTTGTAGTCTATGCTAAGGCGGGTACGAAGGGACGGGGCATGGCAGACG CGAGACGCCATGCGAAGCAGCGGTCAATATAATAAATAATAATAAATTCA AGTCGTTCAAGTTGCCTCCGAACCGATCCCATCGAGAGTGCCGTCCACTC GCCGTGTGCATTTGGTTGTCGTCCCCCTGTCCAACCCAACCATTCCGTCC ACACCAAGGCATCTTTAGCTGCAATATGCTTGGCATCTCCCGTTTGTGCG TGTGAAGCGCCTCGGGCACCCTCACTGCCTCGCGTAGTAGAACCATCTCC GAGTTCCTCTCTCTCCTCATCAAACGCACACGTCACCACTTTTAACAGGC AGCAGCAGCCCCCCCGTCTTCCGTCCACCCTACGACTATACCGAGCACAA CAAGGACCAACGATGACGGCACCTCCTTGTCCTCGCCAGCTGCTCCAATG TGCTGCCACTACCTTCCATCTCCTCTCCCTTGTCCTGTCCCTCACCGCGA TCTCGGCTACCGCAAGTGTCCTCCCTCGATCCCGCGGAACAAGCAGGCAC CACCTTCCCAGTGCGTTCACATTCCTGGGACTCCCCATCCCGGCCCTTCC TAATATCGAGATGCCCTCGTCTCCTATCGAGGTGAAGCTCGTATACCAGC GCGTCATCGACCCAATACACTATGGCGATTATTGCGGCCCTACACCTGAG ATTACGCCGTCCACGGGCTGTCAGCACCCTCTGAATCTAGCGGCCTTGGA CGACACGGACGAGGTGTGTCGCCTGCACGACCATTTTTACTGCAAGTGTG ACTCGATCTACGCCAGACAAGGCAAAACGGCGCCCTCCTCGGCCCTCATC GCCACTCGTTCAGTCCAGTCGGGTTTCCGCAAGACCTATCTCGCCAACCT CGACCGCGACTATTACCTGTGTGTCCACGAGGCAGACCAGGAGATGCTGG GGCATTTCGACACGCTGGTGTCGGAGGGCCGCCTGCCTGCCAAATACTGG GATCCTGTGACCCGCTGGAAGTTTGACTCGCTCTTGGACGTATTTAGGAG GAATATGGCGGTGGACGCCGAGATCCTCGACCTGCAAGCACAGGGCGGGA TGGAAAGAGGGCGAGCCTACTGGTTTGGGGAGGACGAGAAGAAGGGGGAG GAAGGAATGGTGCAGGGCAGCAGCCATGAGTCCCGGATGATCAATGGGAA GAGCAAGGGACTCAAGTCGTCCTCACAGGTAGTGACGGCGACGACGAGCA GCAACGGCAAGCCTTGATGAAGGGGGAAGGAGTACGAGAAGAGCTGTAAA TTTATGTGTTCCATGTGCGGGGAATTGTGACGTTGAACAGAACATGCGAA TGAAAATCACTATTTACGTACACACCCTCCCACACACACTCTCACATACA TATATATATGTATATGTCGTGAGTGTTGTATGTGCGGTGTATGTCGGTGG AAAATGAGAAAAGTGAGACATAACGTGACTGAGGCATATAGTTAGAAATT GTACGGAGACGAGTGAGAAGGCAAGACACTTCCAAAAAGAAGGAAAAGAA TCCCGAAT back to topprotein sequence of NO06G04040.1 >NO06G04040.1-protein ID=NO06G04040.1-protein|Name=NO06G04040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp MTAPPCPRQLLQCAATTFHLLSLVLSLTAISATASVLPRSRGTSRHHLPS AFTFLGLPIPALPNIEMPSSPIEVKLVYQRVIDPIHYGDYCGPTPEITPS TGCQHPLNLAALDDTDEVCRLHDHFYCKCDSIYARQGKTAPSSALIATRS VQSGFRKTYLANLDRDYYLCVHEADQEMLGHFDTLVSEGRLPAKYWDPVT RWKFDSLLDVFRRNMAVDAEILDLQAQGGMERGRAYWFGEDEKKGEEGMV QGSSHESRMINGKSKGLKSSSQVVTATTSSNGKP* back to topmRNA from alignment at chr6:1126890..1131121+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04040.1 ID=NO06G04040.1|Name=NO06G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=4232bp|location=Sequence derived from alignment at chr6:1126890..1131121+ (Nannochloropsis oceanica) GGGAGGAGGAGGGGAGGGGGAGATTGTAGTTGTAGATTTGTACTTGTGAT
TTTAGGGTGGACGATGGAATGAAAGAATAGTTTATTATTGACAAAAATAC
CACCAAGAAAAAGATCAAGAACGAAGAGAATAACAGCAGGACGAACACCA
ACACACGATTGCGACCCGCGTGGAGAGGTACAGGATCATGGCTCCATCGT
TTCCTCTGCCTCTCCATCCCGTTCATTATGCCACAATTATGTGGTATGTC
TTCGAGAGGGGGGGGGGGGGGAATGCGAACATACATTCAGACTGGGTCAC
ATCCCTTCCATGTGAAGGCAAATCATGAATGAACTGTGCGATACATGTTT
AGAAGAAAGGGAAAGACACGTACCCCAATCCCCCATCCCCCCCTCCCTCC
TTGTTGCTTGATTCCGTGACTCTTTGTTTGCTCTTATTGCAGTCTTTCAG
TTTTCTTCCACTTGATTTAAAGCCATCATTCTATTCATTTGATCCATGCT
AAATCTTGCTCTCCTCAGAGTCTTTGTGTATTAAATGTGAATATCTACGT
ATGTACACTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCTCCCT
CATCCCAATGACCCATCATGCCCCAGCCCCAAGCAGCTCCCGCACGTCTG
CCACACCATCTGCCTCGCGAATGGGATGTACGATAAAACATAGTAACACA
AGGACATAAACTGGATAATGATCATGATCACTAACAAGGCTCCCTGACCT
GGTACATCCGAGAAGGCAACTGCGAGGGTCAACACCAACGTCAGCACATA
CACCGCCGTACACAGGGCCCGAGTCGGATGGAACATGCTTTTCGCCTGTG
CAAATGGCCCAGATAAGAAGCACGACCCTGCGAGGGAAATGAGATTTCCT
AGGGTGTACATGACGGCGAAAGGCCCGGGACTGCCCGTCAGGAGCTTGGT
GAACCGGAAGAACGAGCCCACCTCGAGGATGAGACCCAGAACGAAACAGC
AGAGGCAGCCAAAAATGCGATGTTGCCAAGTCAAGGAAGGACACCACCAG
CACATGTCTTCTTCCATTTGTTCACACCATGTCTTGGGTCGGGCTTCTAC
TCCCAGGAGGCGGCGGGCCGAGTCCATGAAGGAAGGAGACGAGGAGGCGA
AGGCGGCTTGGGCGGAGGAAGTGGAAGAGTGGGAGGCACCACGGCCAGGA
TTTAGGCCAGCTTCTAGGTTCATTGGGTGGAAGCACGAAGGTACACTGTG
GCGGGGGCTGGGTGTTGTGAGAGGTTCATGTAAGTTGATGGAATGAAGGG
GGGAGGCGGCATGCTGCTCAGATGCGATGCTGTTCAAATAGGCAGACAGA
ACGTTAAGACCTGGACGGGCATTCATGGAGGCATAAACTTAGAGTTTTGT
TGTCAGCGTGATTGGTAGCGTGTGGGCGGTGTGATTTTGAGTGGGTAGGG
GCTTAAGGCACGGGCTGCTGTGGGCACTTGATTATGATAATGATGACGGT
GGTAGTATTTCTTTTCAAGCCGGAGCGTCTGTGGTGGAACAAAAAAGCAC
TGGCCACCATGCCACCCTCTCATGAAGAACATATTGGCTCTGTTGTGTGA
TGTTGTAGTCTATGCTAAGGCGGGTACGAAGGGACGGGGCATGGCAGACG
CGAGACGCCATGCGAAGCAGCGGTCAATATAATAAATAATAATAAATTCA
AGTCGTTCAAGTTGCCTCCGAACCGATCCCATCGAGAGTGCCGTCCACTC
GCCGTGTGCATTTGGTTGTCGTCCCCCTGTCCAACCCAACCATTCCGTCC
ACACCAAGGCATCTTTAGCTGCAATATGCTTGGCATCTCCCGTTTGTGCG
TGTGAAGCGCCTCGGGCACCCTCACTGCCTCGCGTAGTAGAACCATCTCC
GAGTTCCTCTCTCTCCTCATCAAACGCACACGTCACCACTTTTAACAGGC
AGCAGCAGCCCCCCCGTCTTCCGTCCACCCTACGACTATACCGAGCACAA
CAAGGACCAACGATGACGGCACCTCCTTGTCCTCGCCAGCTGCTCCAATG
TGCTGCCACTACCTTCCATCTCCTCTCCCTTGTCCTGTCCCTCACCGCGA
TCTCGGCTACCGCAAGTGTCCTCCCTCGATCCCGCGGAACAAGCAGGCAC
CACCTTCCCAGTGCGTTCACATTCCTGGGACTCCCCATCCCGGCCCTTCC
TAATATCGAGATGCCCTCGTCTCCTATCGAGGTGAAGCTCGTATACCAGC
GCGTCATCGACCCAATGTATGTGGAGGGATGGAAAGGGAGGAAGGTGAAG
GGAGGGAGGAGAGGCGAGGTAAATAGAATCTCGGCTTGGGGTCATTCACG
CACGATTAATCCTTCCATTTATACATGTATATATGTACATATGCCCTTAT
TTTCAATCTTTCAGACACTATGGCGATTATTGCGGCCCTACACCTGAGGT
ACGTCCCTCACCTGTCCCTCTTCCCTCTCTCCCTTTTTCCTTTTTGGGGG
GGTGTAGGTGCGTGCTCACGAGAATGCAGGCCATGCTGAAGCTGTCGTGC
CTTTTCCATCCTTCCTACCATCTTCCACCTTCCGTTCAGATAACCCTCTG
CACGGGCTGTCGGCACCCGCCGAATCTAGTATTGAATGAATGATTGATTG
AATGCTCGATCAATCTAACAGCCTTATCATTCCTAATCTAGGAGTCTCAT
CCTTCCTAATCTAGTAGCCTCATTCTTTTGAAACTTCCCCCCTCTCCCCC
CTTCCTCTTTTCTCCCTCCTTCCATCAGATTACGCCGTCCACGGGCTGTC
AGCACCCTCTGAATCTAGCGGCCTTGGACGACACGGACGAGGTGTGTCGC
CTGCACGACCATTTTTACTGCAAGTGTGACTCGATCTACGCCAGGTAGGG
AGGTAGGGAAGGAGGGAGGGAGGCATGGGACGACATGCTTGGTAGGGGTA
GGGATGAAGAAAGAGGGAGGGAGGCAAGGAGGCAGGGGGTGGGAAAGGGC
GTTGAATGGAAGGAAAGCACGATAGACACTAGGACTCCTGGAGGCCTTGC
TTTGTCGGTCAATGGGATGCCGATTTGATTTGTTTGACCTGGTGGTCAAG
ACTCACCCTTTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCT
CTTCCTTAGACAAGGCAAAACGGCGCCCTCCTCGGCCCTCATCGCCACTC
GTTCAGTCCAGTCGGGTTTCCGCAAGACCTATCTCGCCAACCTCGACCGC
GACTATTACCTGTGTGTCCACGAGGCAGACCAGGAGATGCTGGGGCATTT
CGACACGCTGGTGTCGGAGGGTGAGGGAGGGAGGGAAATAGGGAGGGAGG
GAGGGAGGGAGGGAGCAGACGAGAAAGAGGGAGAACAAGGTACTGAATGG
TTGACTTAAACGTGAACTAAATAAATAAATCAATAAGTAAATGTCGGTAA
ACACATGTAAACAAACAAGGAAGCGTTGTCCCGGACCATTCGTCCCCCCT
TTCCCTTCCGCCCCCTTTCCCTCCCGTCAGGCCGCCTGCCTGCCAAATAC
TGGGATCCTGTGACCCGCTGGAAGTTTGACTCGCTCTTGGACGTATTTAG
GAGGAATATGGCGGTGGACGCCGAGATCCTCGACCTGGTGAGAGACGGAG
GGAGGGAGCGAGGACGAGAGAAGGGTTGAGTGGAGTTGTGGATGCATGCG
TACTGATTTATATATTGATATTTTCCTTCCTCCTTATGTATACATACATT
TCACACAGCAAGCACAGGGCGGGATGGAAAGAGGGCGAGCCTACTGGTTT
GGGGAGGACGAGAAGAAGGGGGAGGAAGGAATGGTGCAGGGCAGCAGCCA
TGAGTCCCGGATGATCAATGGGAAGAGCAAGGGACTCAAGTCGTCCTCAC
AGGTAGTGACGGCGACGACGAGCAGCAACGGCAAGCCTTGATGAAGGGGG
AAGGAGTACGAGAAGAGCTGTAAATTTATGTGTTCCATGTGCGGGGAATT
GTGACGTTGAACAGAACATGCGAATGAAAATCACTATTTACGTACACACC
CTCCCACACACACTCTCACATACATATATATATGTATATGTCGTGAGTGT
TGTATGTGCGGTGTATGTCGGTGGAAAATGAGAAAAGTGAGACATAACGT
GACTGAGGCATATAGTTAGAAATTGTACGGAGACGAGTGAGAAGGCAAGA
CACTTCCAAAAAGAAGGAAAAGAATCCCGAAT back to topCoding sequence (CDS) from alignment at chr6:1126890..1131121+ >NO06G04040.1 ID=NO06G04040.1|Name=NO06G04040.1|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at chr6:1126890..1131121+ (Nannochloropsis oceanica) ATGACGGCACCTCCTTGTCCTCGCCAGCTGCTCCAATGTGCTGCCACTAC CTTCCATCTCCTCTCCCTTGTCCTGTCCCTCACCGCGATCTCGGCTACCG CAAGTGTCCTCCCTCGATCCCGCGGAACAAGCAGGCACCACCTTCCCAGT GCGTTCACATTCCTGGGACTCCCCATCCCGGCCCTTCCTAATATCGAGAT GCCCTCGTCTCCTATCGAGGTGAAGCTCGTATACCAGCGCGTCATCGACC CAATACACTATGGCGATTATTGCGGCCCTACACCTGAGATTACGCCGTCC ACGGGCTGTCAGCACCCTCTGAATCTAGCGGCCTTGGACGACACGGACGA GGTGTGTCGCCTGCACGACCATTTTTACTGCAAGTGTGACTCGATCTACG CCAGACAAGGCAAAACGGCGCCCTCCTCGGCCCTCATCGCCACTCGTTCA GTCCAGTCGGGTTTCCGCAAGACCTATCTCGCCAACCTCGACCGCGACTA TTACCTGTGTGTCCACGAGGCAGACCAGGAGATGCTGGGGCATTTCGACA CGCTGGTGTCGGAGGGCCGCCTGCCTGCCAAATACTGGGATCCTGTGACC CGCTGGAAGTTTGACTCGCTCTTGGACGTATTTAGGAGGAATATGGCGGT GGACGCCGAGATCCTCGACCTGCAAGCACAGGGCGGGATGGAAAGAGGGC GAGCCTACTGGTTTGGGGAGGACGAGAAGAAGGGGGAGGAAGGAATGGTG CAGGGCAGCAGCCATGAGTCCCGGATGATCAATGGGAAGAGCAAGGGACT CAAGTCGTCCTCACAGGTAGTGACGGCGACGACGAGCAGCAACGGCAAGC CTTGA back to top
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