NO06G03960.1, NO06G03960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03960.1
Unique NameNO06G03960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1772
Alignment locationchr6:1109708..1111600 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1109708..1111600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03960.1 vs.
Match: EWM26390.1 (inositol monophosphatase [Nannochloropsis gaditana])

HSP 1 Score: 403.7 bits (1036), Expect = 5.800e-109
Identity = 214/329 (65.05%), Postives = 250/329 (75.99%), Query Frame = 0 
Query:    8 PTPPPPPPPEELEAYCRSAEKAARAAGELIMASLRERQTNPRLVIESKGGVDLVTEVDRQCEEGIFQALRTKYPTHHFVGEESTYLSGPSSASSPPPFGSPGEAAPTWICDPIDGTTNFVHGHPLVAVAIALSVHQTIVVGVVFIPYLNEMYTAWRGGGGTRCNDTPLC-VGRATGIHDALLVNNIGSSRDWRFSHLSFARLHYLMTRGEPGPLQGLRMSGSACVNLAMVAAGKVDVYLEDGYGGVWDVAAGKILVEEAGGVVVGLGGEAWELNLGKGRVVAGNKGVVMDVVRKVGEAD----RRYRWRERGKTGVVGVGMGLFLWGMK 332
            P PP  P  +ELE YC+SAE AAR AGELIMASLR RQ+ P L +ESKGGVDLVTEVDR CE+ I QALR +YPTH F+GEES +LS    +SS  PFG PGE+APTWI DPIDGTTNFVHGHP +AVAI LS+HQ +V+GV+++P LNEMY AWR GGG RCND PL  V  A  IHDALLVNNIGS R+  F  LSF RL+ LMT   PGPLQGLRMSGSACVNLA+VA G++D Y+EDG GGVWDVAAGKILVEEAGGVVVG  GE W L +G+GRV+AGN  +V D+V ++ + D    RR R R   K G++ + MG+ L  M+
Sbjct:    6 PAPPLFPSQKELETYCQSAENAARNAGELIMASLRARQSRPCLAVESKGGVDLVTEVDRLCEKEITQALRAEYPTHAFIGEESIFLSTGELSSSSAPFGLPGESAPTWIIDPIDGTTNFVHGHPFIAVAIGLSIHQDVVLGVIYLPVLNEMYRAWR-GGGARCNDGPLLKVSGAQSIHDALLVNNIGSCREQEFLQLSFHRLYALMTAKLPGPLQGLRMSGSACVNLALVAGGRLDAYVEDGVGGVWDVAAGKILVEEAGGVVVGWEGEPWVLTMGRGRVIAGNAALVSDLVARMRDVDGRVWRRKRLRVALKVGMIAL-MGVGLLAMR 332
The following BLAST results are available for this feature:
BLAST of NO06G03960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26390.15.800e-10965.05inositol monophosphatase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03960NO06G03960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03960.1NO06G03960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03960.1.cds1NO06G03960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03960.1.cds2NO06G03960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03960.1 ID=NO06G03960.1|Name=NO06G03960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp
ATGCCACTATCAAACGATGTTCCCACCCCTCCGCCCCCTCCGCCCCCCGA
AGAACTCGAAGCCTACTGCCGAAGCGCCGAAAAAGCGGCACGTGCTGCAG
GCGAGCTCATCATGGCCTCCCTACGTGAGCGTCAGACGAACCCTCGCCTT
GTTATCGAGAGCAAGGGCGGTGTGGATCTGGTCACAGAAGTCGATCGACA
ATGCGAAGAAGGCATTTTCCAAGCTCTTCGGACCAAGTATCCTACGCATC
ATTTTGTCGGGGAAGAGTCTACCTATCTCTCCGGCCCATCCTCCGCCTCC
TCCCCTCCTCCTTTCGGCTCCCCTGGTGAAGCAGCTCCCACCTGGATCTG
CGATCCCATCGATGGCACAACCAACTTTGTCCATGGCCACCCACTTGTCG
CAGTCGCCATTGCCCTCAGCGTCCACCAAACTATCGTCGTCGGCGTGGTC
TTCATCCCCTACCTGAACGAGATGTACACTGCGTGGCGAGGGGGAGGAGG
CACACGCTGCAATGATACCCCCCTCTGCGTGGGCAGGGCCACGGGTATAC
ATGATGCTTTGCTCGTTAACAATATAGGGTCGTCCCGTGACTGGCGTTTC
TCCCATCTGTCCTTCGCACGCCTCCATTACCTAATGACGAGGGGAGAGCC
CGGACCATTGCAGGGTCTGCGGATGTCGGGCTCGGCCTGTGTGAATCTTG
CCATGGTGGCCGCGGGTAAGGTTGACGTGTATTTGGAAGATGGTTATGGA
GGTGTGTGGGATGTGGCCGCCGGGAAAATACTCGTAGAGGAGGCGGGGGG
GGTCGTTGTAGGCTTGGGCGGAGAGGCTTGGGAGTTGAATTTAGGGAAGG
GCAGGGTGGTGGCCGGTAATAAAGGTGTGGTGATGGACGTGGTACGAAAG
GTAGGGGAGGCGGACAGGAGGTACCGGTGGAGGGAGCGAGGGAAGACGGG
CGTGGTTGGAGTGGGGATGGGGTTATTTTTGTGGGGGATGAAATGGTACG
TGTCGAAGAGAAGTGGAGAGAGAACATAAGCAGGTGGGTGAAAATGATGC
AGAAGAAATAAAAGAAGAAATTAAACAAGGAGAAGGAGAAGAAGAGAGAG
CTTGTCTTTCTTTATGTCAAAGGATTAATTATGCGGTTTACATATTTTGC
GTGTCCTGTGGAGTTAGTGCACAGCCGTGCTCGCATTCTATTTTCATCTT
CCATTGTCCTGCTCCCCCTCTTTCGATTCCTCCCCTACGGCCTACAGCTT
GCCTATTCTACCCTGCTACTGTCGACAGATTCGCCTCTTCCCCTCCCTCC
TTCTCTCCCTCCTCCTCCTCCTTCTCCAAAGTTGTAGCAGCCCCGGCCGG
CCCCTGCACACTCACCATGTCGTTCAAGGTTTGACTAAACTCGACGTCAC
CACCCACGATCCCATTCACCATCCCCCCGCCCTCCTCCCTCTCTCCCTTG
TCCCCCACCGCCGCAGCAGCCGCGGCCGCCCTCTCCATGATCGCCACATC
GTTCAAGGTTTGACTCGACTCCAAATCACAGTACGAAAAGTCACTAAATC
GACACGACAAGGACAAGAGCGACACGCTTTCACCCCCTTCTCCCTCCCTC
CCTCCCTCCTCCATGTCGGACGCAAACGACTCAAATTGATCCGCTGCGGG
CCTCCGCCGATCTCTCCCGCGTTTTCCCCAACCTCCCTCCCTCTCTCCCC
CTCCCTCCCCCTCCATTAAAAACAATCCCGCCTCCGCCCCCATCACTCCA
GCCGCCGTCAGGTCAATGCTTC
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protein sequence of NO06G03960.1

>NO06G03960.1-protein ID=NO06G03960.1-protein|Name=NO06G03960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MPLSNDVPTPPPPPPPEELEAYCRSAEKAARAAGELIMASLRERQTNPRL
VIESKGGVDLVTEVDRQCEEGIFQALRTKYPTHHFVGEESTYLSGPSSAS
SPPPFGSPGEAAPTWICDPIDGTTNFVHGHPLVAVAIALSVHQTIVVGVV
FIPYLNEMYTAWRGGGGTRCNDTPLCVGRATGIHDALLVNNIGSSRDWRF
SHLSFARLHYLMTRGEPGPLQGLRMSGSACVNLAMVAAGKVDVYLEDGYG
GVWDVAAGKILVEEAGGVVVGLGGEAWELNLGKGRVVAGNKGVVMDVVRK
VGEADRRYRWRERGKTGVVGVGMGLFLWGMKWYVSKRSGERT*
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mRNA from alignment at chr6:1109708..1111600+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03960.1 ID=NO06G03960.1|Name=NO06G03960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1893bp|location=Sequence derived from alignment at chr6:1109708..1111600+ (Nannochloropsis oceanica)
ATGCCACTATCAAACGATGTTCCCACCCCTCCGCCCCCTCCGCCCCCCGA
AGAACTCGAAGCCTACTGCCGAAGCGCCGAAAAAGCGGCACGTGCTGCAG
GCGAGCTCATCATGGCCTCCCTACGTGAGCGTCAGACGAACCCTCGCCTT
GTTATCGAGAGCAAGGGCGGTGTGGATCTGGTCACAGAAGTCGATCGACA
ATGCGAAGAAGGCATTTTCCAAGCTCTTCGGACCAAGTATCCTACGCATC
ATTTTGTCGGGGAAGAGTCTACCTATCTCTCCGGCCCATCCTCCGCCTCC
TCCCCTCCTCCTTTCGGCTCCCCTGGTGAAGCAGCTCCCACCTGGATCTG
CGATCCCATCGATGGTACACTTGATGCACTCATTTTCAAACCCCACTTCC
TCCCCTTCTCCCGCCCCTCCGAAATCACACTTTCCATAAACTCACTTTTT
ATTATCCTCTCGTCTCACTCCTACCTCTCTAACAGGCACAACCAACTTTG
TCCATGGCCACCCACTTGTCGCAGTCGCCATTGCCCTCAGCGTCCACCAA
ACTATCGTCGTCGGCGTGGTCTTCATCCCCTACCTGAACGAGATGTACAC
TGCGTGGCGAGGGGGAGGAGGCACACGCTGCAATGATACCCCCCTCTGCG
TGGGCAGGGCCACGGGTATACATGATGCTTTGCTCGTTAACAATATAGGG
TCGTCCCGTGACTGGCGTTTCTCCCATCTGTCCTTCGCACGCCTCCATTA
CCTAATGACGAGGGGAGAGCCCGGACCATTGCAGGGTCTGCGGATGTCGG
GCTCGGCCTGTGTGAATCTTGCCATGGTGGCCGCGGGTAAGGTTGACGTG
TATTTGGAAGATGGTTATGGAGGTGTGTGGGATGTGGCCGCCGGGAAAAT
ACTCGTAGAGGAGGCGGGGGGGGTCGTTGTAGGCTTGGGCGGAGAGGCTT
GGGAGTTGAATTTAGGGAAGGGCAGGGTGGTGGCCGGTAATAAAGGTGTG
GTGATGGACGTGGTACGAAAGGTAGGGGAGGCGGACAGGAGGTACCGGTG
GAGGGAGCGAGGGAAGACGGGCGTGGTTGGAGTGGGGATGGGGTTATTTT
TGTGGGGGATGAAATGGTACGTGTCGAAGAGAAGTGGAGAGAGAACATAA
GCAGGTGGGTGAAAATGATGCAGAAGAAATAAAAGAAGAAATTAAACAAG
GAGAAGGAGAAGAAGAGAGAGCTTGTCTTTCTTTATGTCAAAGGATTAAT
TATGCGGTTTACATATTTTGCGTGTCCTGTGGAGTTAGTGCACAGCCGTG
CTCGCATTCTATTTTCATCTTCCATTGTCCTGCTCCCCCTCTTTCGATTC
CTCCCCTACGGCCTACAGCTTGCCTATTCTACCCTGCTACTGTCGACAGA
TTCGCCTCTTCCCCTCCCTCCTTCTCTCCCTCCTCCTCCTCCTTCTCCAA
AGTTGTAGCAGCCCCGGCCGGCCCCTGCACACTCACCATGTCGTTCAAGG
TTTGACTAAACTCGACGTCACCACCCACGATCCCATTCACCATCCCCCCG
CCCTCCTCCCTCTCTCCCTTGTCCCCCACCGCCGCAGCAGCCGCGGCCGC
CCTCTCCATGATCGCCACATCGTTCAAGGTTTGACTCGACTCCAAATCAC
AGTACGAAAAGTCACTAAATCGACACGACAAGGACAAGAGCGACACGCTT
TCACCCCCTTCTCCCTCCCTCCCTCCCTCCTCCATGTCGGACGCAAACGA
CTCAAATTGATCCGCTGCGGGCCTCCGCCGATCTCTCCCGCGTTTTCCCC
AACCTCCCTCCCTCTCTCCCCCTCCCTCCCCCTCCATTAAAAACAATCCC
GCCTCCGCCCCCATCACTCCAGCCGCCGTCAGGTCAATGCTTC
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Coding sequence (CDS) from alignment at chr6:1109708..1111600+

>NO06G03960.1 ID=NO06G03960.1|Name=NO06G03960.1|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at chr6:1109708..1111600+ (Nannochloropsis oceanica)
ATGCCACTATCAAACGATGTTCCCACCCCTCCGCCCCCTCCGCCCCCCGA
AGAACTCGAAGCCTACTGCCGAAGCGCCGAAAAAGCGGCACGTGCTGCAG
GCGAGCTCATCATGGCCTCCCTACGTGAGCGTCAGACGAACCCTCGCCTT
GTTATCGAGAGCAAGGGCGGTGTGGATCTGGTCACAGAAGTCGATCGACA
ATGCGAAGAAGGCATTTTCCAAGCTCTTCGGACCAAGTATCCTACGCATC
ATTTTGTCGGGGAAGAGTCTACCTATCTCTCCGGCCCATCCTCCGCCTCC
TCCCCTCCTCCTTTCGGCTCCCCTGGTGAAGCAGCTCCCACCTGGATCTG
CGATCCCATCGATGGCACAACCAACTTTGTCCATGGCCACCCACTTGTCG
CAGTCGCCATTGCCCTCAGCGTCCACCAAACTATCGTCGTCGGCGTGGTC
TTCATCCCCTACCTGAACGAGATGTACACTGCGTGGCGAGGGGGAGGAGG
CACACGCTGCAATGATACCCCCCTCTGCGTGGGCAGGGCCACGGGTATAC
ATGATGCTTTGCTCGTTAACAATATAGGGTCGTCCCGTGACTGGCGTTTC
TCCCATCTGTCCTTCGCACGCCTCCATTACCTAATGACGAGGGGAGAGCC
CGGACCATTGCAGGGTCTGCGGATGTCGGGCTCGGCCTGTGTGAATCTTG
CCATGGTGGCCGCGGGTAAGGTTGACGTGTATTTGGAAGATGGTTATGGA
GGTGTGTGGGATGTGGCCGCCGGGAAAATACTCGTAGAGGAGGCGGGGGG
GGTCGTTGTAGGCTTGGGCGGAGAGGCTTGGGAGTTGAATTTAGGGAAGG
GCAGGGTGGTGGCCGGTAATAAAGGTGTGGTGATGGACGTGGTACGAAAG
GTAGGGGAGGCGGACAGGAGGTACCGGTGGAGGGAGCGAGGGAAGACGGG
CGTGGTTGGAGTGGGGATGGGGTTATTTTTGTGGGGGATGAAATGGTACG
TGTCGAAGAGAAGTGGAGAGAGAACATAA
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Synonyms
Publications