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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:1002117..1004317 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03660.1 vs.
Match: EWM26370.1 (hypothetical protein Naga_100031g11 [Nannochloropsis gaditana]) HSP 1 Score: 457.6 bits (1176), Expect = 4.300e-125 Identity = 252/442 (57.01%), Postives = 302/442 (68.33%), Query Frame = 0
Query: 1 MLSSCTWTSEL-FKPATTTSTPSYLKGRARKNRVSRSGRRDKPQYEAALTRLLAVTEPTYATTLPISRFPIPSLSSKCP-----SHASVTTQVEDTAEWLASVKGIDPAEGHLCNPQRAQRKRQQVANLMQVCHAYIGQLLALQSTSATPAQLRVIEFCCGSGHVALPLAALYPSVHFILLDNRPPSIRQAEERSAAANFHNVTCRCEDLHDFPDSETFHLGIALHACGPLTDLVMDFCLKQRAAYVLCPCCIGKIQASPLEFPRSSCFRALLPDRRQYESMASAGDLSVRQFFSKSKVAETDGQKATSIGNNDIKPENPRQERDKQEQEEEQQQQHRRRRLCKAFVETDRGLRAKEAGYLTRLMLLTPRECTPKNDLLCGYPGEWEEMILKRETEKGREVVEEMEYVVVNGNDAAVFDAFFGDSGAGGEGEDDASDDDEVG 437
MLSSCTW S++ + S Y+ GRARK RV GRRD PQYE AL LLAV +P YAT S + SLSS CP ++ E TA WL G+DPAEGHLCN +RA+RKRQQVANL+Q CH YI LLA ++T +RVIEFCCGSGHVALPLAA+YP V FIL+DNRP S+ QA R+ A NVTCRCEDLH F E F LGIALHACGPLTDLVMD C++QRAAYVLCPCCIGK+Q+SPLE+PRSS FRAL DRR YE++ASA D+SVRQF ++ E + K + + D++ E+QQQHRRRRLCK+FVE DRG RA+EAGY TRLMLLTPRECTPKND+LCG+P EW+++ L G EV E + +V+G+DA FDA+FGD+ GE +D + DE G
Sbjct: 1 MLSSCTWASDVGHVQVSCESKKEYMHGRARKTRVRALGRRDAPQYETALRLLLAVAQPAYAT----SSHALNSLSSSCPIMTNLPYSDTVQNCESTAAWLEGRPGLDPAEGHLCNQERARRKRQQVANLVQACHTYIKYLLATWERNSTGKPIRVIEFCCGSGHVALPLAAMYPPVQFILIDNRPASVHQARARAVRAGLQNVTCRCEDLHQFSLGEEFDLGIALHACGPLTDLVMDLCVQQRAAYVLCPCCIGKVQSSPLEYPRSSRFRALNLDRRHYEALASAADMSVRQFCFSPRIQE-ERLKDCAFAD------------DEEISRMERQQQHRRRRLCKSFVEMDRGFRAQEAGYSTRLMLLTPRECTPKNDMLCGHPEEWQKLPLDALENIGAEVGHEHVH-LVDGDDACAFDAWFGDT--VGENVEDLASGDESG 422
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03660.1 ID=NO06G03660.1|Name=NO06G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2201bp
TGTTTCATTTACATCGATTGATAGATTGATTGATTTATTTCTGAGAGCGA
GATATTGATCCCTATAAGGCCCCTTGATAATTATTTAATGGGTCATTTGT
TTATTTACATTGAATTACGTCGCATCTAACATAGACCTGTCAATCGGTCG
TCTTTCCTTGCCGAATGCATATCAATGAAGTCCACGAATAAGTTATTTAA
CGACCAACAGTCCTTCATGAATTTGTGAATGTAAATGAATTGGACATGGA
AACGATGTAGCAAGAGATGATAAAAAGACGACATCTGTCACAAAAGCTTG
TGGCGAGGGGCTTCGTTTATGCAAACAAAGGCGTGGCAAGTGTGTGATAA
TTTGAAGTGTGGTTTGCATTATGGGCCTACGGGTGGTAGGGAGGAACGAT
GGGCTACTTTGCGTGGCTCCAAAAAATCTGCGGCCACACGTACAAGACCA
CAGACACACGAAGGACGATGTCGGAGCCTTTTTCGCTCTAGAAAATACCC
GTGGGGCTCGGTAGGGCTTGGTACTGGTGCATATGGGTGTGCATCATATG
CCTTTTGCTTTTTTACAGGGTTTGCTCTGCTTCTCAAACCCCTCAAAAAG
CATCGAACACATGGACAACTCCTCAAAAAGCAAACCCCTATCCACTACGA
CGGCCTGGGCTTTACTCGTCGCGTTCATGATGATGTACAGAACAGCTTCT
GCTGATACTGCTGTTGGGCCGGCAGCGAGAGCTCCGACCCTGGCTTCGCC
TAGTGTCTCCCCCAGCCCTCCCCAGGGGCTGGACTTCTATTCTAATCCCA
TACCACACAATACTGCATACACCGGCAGAAGATGCTGTCGTCCTGCACGT
GGACAAGTGAATTGTTTAAACCAGCTACTACCACCTCTACGCCTTCGTAC
CTCAAGGGCCGCGCGCGCAAGAATCGCGTGAGCCGGTCGGGCCGTCGGGA
CAAGCCACAATACGAGGCTGCATTGACGCGGCTACTAGCCGTCACAGAAC
CCACGTACGCCACAACGTTGCCAATCTCCCGCTTTCCTATACCCTCCTTA
TCGTCCAAATGCCCTTCCCATGCCTCCGTCACGACCCAAGTCGAAGACAC
GGCCGAGTGGCTGGCATCGGTCAAGGGCATCGATCCCGCTGAAGGACACC
TGTGCAATCCCCAGCGAGCGCAACGAAAACGGCAGCAAGTGGCAAATTTG
ATGCAGGTATGCCACGCATATATCGGGCAGCTACTTGCCCTTCAAAGCAC
CTCTGCAACGCCAGCTCAGCTCAGAGTGATTGAATTCTGCTGCGGGAGTG
GCCATGTGGCGTTACCTCTGGCAGCACTCTATCCCTCCGTGCATTTCATT
CTTCTCGACAACCGCCCCCCCTCCATCCGTCAAGCAGAGGAGCGATCTGC
TGCGGCCAACTTCCACAATGTAACATGCCGGTGCGAAGATTTGCACGACT
TTCCAGATTCTGAAACGTTTCACCTCGGCATAGCTCTTCATGCATGCGGT
CCTCTGACAGACTTGGTGATGGATTTTTGCCTGAAGCAACGGGCGGCCTA
CGTTCTTTGCCCCTGCTGCATTGGCAAGATTCAAGCCAGTCCTCTAGAAT
TTCCTCGATCCTCTTGTTTCCGGGCGCTTTTACCTGATCGGCGGCAATAT
GAGTCGATGGCATCTGCTGGGGATCTGAGCGTGCGACAGTTCTTTTCCAA
ATCGAAAGTGGCTGAAACTGACGGGCAAAAGGCCACCAGCATTGGAAATA
ACGATATCAAGCCGGAGAACCCGCGACAGGAGCGGGATAAGCAAGAGCAG
GAAGAGGAACAGCAGCAGCAGCATCGGCGGCGGCGGCTTTGTAAAGCTTT
TGTAGAGACGGACCGGGGATTGCGGGCGAAGGAGGCTGGCTATTTGACGC
GATTGATGCTGCTGACACCCCGAGAATGTACTCCAAAAAATGACCTGCTT
TGTGGTTATCCCGGTGAATGGGAAGAAATGATTTTGAAGAGGGAAACTGA
AAAAGGAAGAGAGGTGGTGGAGGAAATGGAGTACGTGGTGGTCAATGGCA
ACGACGCCGCAGTCTTCGATGCTTTTTTTGGGGATTCAGGAGCAGGTGGA
GAGGGAGAGGATGATGCGTCTGATGATGATGAAGTAGGTTGAAAGGAAAT
GACAATTAAAGTCACATATTGATACATCTAGAAGCCTTCTTTGGCTCTGT
A back to topprotein sequence of NO06G03660.1 >NO06G03660.1-protein ID=NO06G03660.1-protein|Name=NO06G03660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MLSSCTWTSELFKPATTTSTPSYLKGRARKNRVSRSGRRDKPQYEAALTR
LLAVTEPTYATTLPISRFPIPSLSSKCPSHASVTTQVEDTAEWLASVKGI
DPAEGHLCNPQRAQRKRQQVANLMQVCHAYIGQLLALQSTSATPAQLRVI
EFCCGSGHVALPLAALYPSVHFILLDNRPPSIRQAEERSAAANFHNVTCR
CEDLHDFPDSETFHLGIALHACGPLTDLVMDFCLKQRAAYVLCPCCIGKI
QASPLEFPRSSCFRALLPDRRQYESMASAGDLSVRQFFSKSKVAETDGQK
ATSIGNNDIKPENPRQERDKQEQEEEQQQQHRRRRLCKAFVETDRGLRAK
EAGYLTRLMLLTPRECTPKNDLLCGYPGEWEEMILKRETEKGREVVEEME
YVVVNGNDAAVFDAFFGDSGAGGEGEDDASDDDEVG* back to topmRNA from alignment at chr6:1002117..1004317- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03660.1 ID=NO06G03660.1|Name=NO06G03660.1|organism=Nannochloropsis oceanica|type=mRNA|length=2201bp|location=Sequence derived from alignment at chr6:1002117..1004317- (Nannochloropsis oceanica)
TGTTTCATTTACATCGATTGATAGATTGATTGATTTATTTCTGAGAGCGA
GATATTGATCCCTATAAGGCCCCTTGATAATTATTTAATGGGTCATTTGT
TTATTTACATTGAATTACGTCGCATCTAACATAGACCTGTCAATCGGTCG
TCTTTCCTTGCCGAATGCATATCAATGAAGTCCACGAATAAGTTATTTAA
CGACCAACAGTCCTTCATGAATTTGTGAATGTAAATGAATTGGACATGGA
AACGATGTAGCAAGAGATGATAAAAAGACGACATCTGTCACAAAAGCTTG
TGGCGAGGGGCTTCGTTTATGCAAACAAAGGCGTGGCAAGTGTGTGATAA
TTTGAAGTGTGGTTTGCATTATGGGCCTACGGGTGGTAGGGAGGAACGAT
GGGCTACTTTGCGTGGCTCCAAAAAATCTGCGGCCACACGTACAAGACCA
CAGACACACGAAGGACGATGTCGGAGCCTTTTTCGCTCTAGAAAATACCC
GTGGGGCTCGGTAGGGCTTGGTACTGGTGCATATGGGTGTGCATCATATG
CCTTTTGCTTTTTTACAGGGTTTGCTCTGCTTCTCAAACCCCTCAAAAAG
CATCGAACACATGGACAACTCCTCAAAAAGCAAACCCCTATCCACTACGA
CGGCCTGGGCTTTACTCGTCGCGTTCATGATGATGTACAGAACAGCTTCT
GCTGATACTGCTGTTGGGCCGGCAGCGAGAGCTCCGACCCTGGCTTCGCC
TAGTGTCTCCCCCAGCCCTCCCCAGGGGCTGGACTTCTATTCTAATCCCA
TACCACACAATACTGCATACACCGGCAGAAGATGCTGTCGTCCTGCACGT
GGACAAGTGAATTGTTTAAACCAGCTACTACCACCTCTACGCCTTCGTAC
CTCAAGGGCCGCGCGCGCAAGAATCGCGTGAGCCGGTCGGGCCGTCGGGA
CAAGCCACAATACGAGGCTGCATTGACGCGGCTACTAGCCGTCACAGAAC
CCACGTACGCCACAACGTTGCCAATCTCCCGCTTTCCTATACCCTCCTTA
TCGTCCAAATGCCCTTCCCATGCCTCCGTCACGACCCAAGTCGAAGACAC
GGCCGAGTGGCTGGCATCGGTCAAGGGCATCGATCCCGCTGAAGGACACC
TGTGCAATCCCCAGCGAGCGCAACGAAAACGGCAGCAAGTGGCAAATTTG
ATGCAGGTATGCCACGCATATATCGGGCAGCTACTTGCCCTTCAAAGCAC
CTCTGCAACGCCAGCTCAGCTCAGAGTGATTGAATTCTGCTGCGGGAGTG
GCCATGTGGCGTTACCTCTGGCAGCACTCTATCCCTCCGTGCATTTCATT
CTTCTCGACAACCGCCCCCCCTCCATCCGTCAAGCAGAGGAGCGATCTGC
TGCGGCCAACTTCCACAATGTAACATGCCGGTGCGAAGATTTGCACGACT
TTCCAGATTCTGAAACGTTTCACCTCGGCATAGCTCTTCATGCATGCGGT
CCTCTGACAGACTTGGTGATGGATTTTTGCCTGAAGCAACGGGCGGCCTA
CGTTCTTTGCCCCTGCTGCATTGGCAAGATTCAAGCCAGTCCTCTAGAAT
TTCCTCGATCCTCTTGTTTCCGGGCGCTTTTACCTGATCGGCGGCAATAT
GAGTCGATGGCATCTGCTGGGGATCTGAGCGTGCGACAGTTCTTTTCCAA
ATCGAAAGTGGCTGAAACTGACGGGCAAAAGGCCACCAGCATTGGAAATA
ACGATATCAAGCCGGAGAACCCGCGACAGGAGCGGGATAAGCAAGAGCAG
GAAGAGGAACAGCAGCAGCAGCATCGGCGGCGGCGGCTTTGTAAAGCTTT
TGTAGAGACGGACCGGGGATTGCGGGCGAAGGAGGCTGGCTATTTGACGC
GATTGATGCTGCTGACACCCCGAGAATGTACTCCAAAAAATGACCTGCTT
TGTGGTTATCCCGGTGAATGGGAAGAAATGATTTTGAAGAGGGAAACTGA
AAAAGGAAGAGAGGTGGTGGAGGAAATGGAGTACGTGGTGGTCAATGGCA
ACGACGCCGCAGTCTTCGATGCTTTTTTTGGGGATTCAGGAGCAGGTGGA
GAGGGAGAGGATGATGCGTCTGATGATGATGAAGTAGGTTGAAAGGAAAT
GACAATTAAAGTCACATATTGATACATCTAGAAGCCTTCTTTGGCTCTGT
A back to topCoding sequence (CDS) from alignment at chr6:1002117..1004317- >NO06G03660.1 ID=NO06G03660.1|Name=NO06G03660.1|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at chr6:1002117..1004317- (Nannochloropsis oceanica)
ATGCTGTCGTCCTGCACGTGGACAAGTGAATTGTTTAAACCAGCTACTAC
CACCTCTACGCCTTCGTACCTCAAGGGCCGCGCGCGCAAGAATCGCGTGA
GCCGGTCGGGCCGTCGGGACAAGCCACAATACGAGGCTGCATTGACGCGG
CTACTAGCCGTCACAGAACCCACGTACGCCACAACGTTGCCAATCTCCCG
CTTTCCTATACCCTCCTTATCGTCCAAATGCCCTTCCCATGCCTCCGTCA
CGACCCAAGTCGAAGACACGGCCGAGTGGCTGGCATCGGTCAAGGGCATC
GATCCCGCTGAAGGACACCTGTGCAATCCCCAGCGAGCGCAACGAAAACG
GCAGCAAGTGGCAAATTTGATGCAGGTATGCCACGCATATATCGGGCAGC
TACTTGCCCTTCAAAGCACCTCTGCAACGCCAGCTCAGCTCAGAGTGATT
GAATTCTGCTGCGGGAGTGGCCATGTGGCGTTACCTCTGGCAGCACTCTA
TCCCTCCGTGCATTTCATTCTTCTCGACAACCGCCCCCCCTCCATCCGTC
AAGCAGAGGAGCGATCTGCTGCGGCCAACTTCCACAATGTAACATGCCGG
TGCGAAGATTTGCACGACTTTCCAGATTCTGAAACGTTTCACCTCGGCAT
AGCTCTTCATGCATGCGGTCCTCTGACAGACTTGGTGATGGATTTTTGCC
TGAAGCAACGGGCGGCCTACGTTCTTTGCCCCTGCTGCATTGGCAAGATT
CAAGCCAGTCCTCTAGAATTTCCTCGATCCTCTTGTTTCCGGGCGCTTTT
ACCTGATCGGCGGCAATATGAGTCGATGGCATCTGCTGGGGATCTGAGCG
TGCGACAGTTCTTTTCCAAATCGAAAGTGGCTGAAACTGACGGGCAAAAG
GCCACCAGCATTGGAAATAACGATATCAAGCCGGAGAACCCGCGACAGGA
GCGGGATAAGCAAGAGCAGGAAGAGGAACAGCAGCAGCAGCATCGGCGGC
GGCGGCTTTGTAAAGCTTTTGTAGAGACGGACCGGGGATTGCGGGCGAAG
GAGGCTGGCTATTTGACGCGATTGATGCTGCTGACACCCCGAGAATGTAC
TCCAAAAAATGACCTGCTTTGTGGTTATCCCGGTGAATGGGAAGAAATGA
TTTTGAAGAGGGAAACTGAAAAAGGAAGAGAGGTGGTGGAGGAAATGGAG
TACGTGGTGGTCAATGGCAACGACGCCGCAGTCTTCGATGCTTTTTTTGG
GGATTCAGGAGCAGGTGGAGAGGGAGAGGATGATGCGTCTGATGATGATG
AAGTAGGTTGA back to top
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