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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:965903..968335 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03500.1 vs.
Match: XP_005853473.1 (nadph dependent diflavin oxidoreductase 1 [Nannochloropsis gaditana CCMP526]; EKU22887.1 nadph dependent diflavin oxidoreductase 1 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 872.8 bits (2254), Expect = 7.400e-250 Identity = 473/740 (63.92%), Postives = 546/740 (73.78%), Query Frame = 0
Query: 32 PTYSMA--------QRLVVLYGSQTGTAQDMAEELGRKGKRRGFSPVEVQAWDSYDVTRLPEETFVLAVVSTTGDGEEPDNMRKSWGFLLRKALPMGSLSGLRFATFGLGDTSYPKFNAVARRLHIRLKQLGATPFVECGLGDDQSARGVLGDFDEWCQVMWPALHALCPEMVIPPNVDMPASEPVLYACRIEGTSTSNEKISTASNGCAAVDQQAPPWPGEAGADQEYDLLEDLPGFYQKPHGARNPSSQPFLARLMVNKRLTPDDWFQETRHLEWDLRGFTREEEGSSRSKSSSGSSSSCNGHSNGDRKQQQQQQQQQQAYKAGDVAHLYPQNPPEAVSAILALLSLQPTDKLYIERLPEPSPPHTLP-PRDLPPTCTAFILFLRYLDITAVPKRALLEQLALLATNEEEREKLFELASPDGADLYNDYCYREKRSLVEVLQDFPSARPSLPQLLTLLPRLRPRAFSIASTCHPSGPTPHQLHLCVAVVSFRTPYKRQRRGLCSSYLASLPVGRHVPLWIKPGSFVLPASPWTPLVMVGPGTGIAPFKAMVEERAAQRKEEEEKQLQQVQIDGQ-GIGGE----RTRVPPFDRLFFGCRKEQVDFYYRAELEKYT---QGGGKEGGGGREGELALVTAFSRDQEGGRKVYVTHRLEEEGAVLWRLLGGEGRGEG-------GKASFFVAGSAKRMPTDVFESLKGVAVREGGLSEVEATKFLDRLVRARRYCVESWAV 748
PT SMA QRL+VLYGSQTGTAQD+ EEL RKG+RRGFSPVE+QAWD YDVTRLPEET +LAVVSTTGDGEEPDNMRKSW FLLRKALP GSL LRF TFGLGD++YPKFNAVARRLH RLKQLGA P VE GLGDDQS RGVLGDFD WCQ MWPALHALCP +++PP+V+ PA EP++Y C++ T + A + AP +P ++E L+DLP FYQ+P+GARNP +PF ARL+VNKRLTPDDWFQETRHLE+DL GF EG+ + + C G Q +Q++Q Y+AGDVA+LYP+N P AVSA L L +L P L I PE L P D+P C A LF RYLDI AVPKRA+LEQLALLA N EER+KL EL+SP+GADLY++YCYREKRS+ EVLQDFPS RPSL +LL+LLPRLRPRAFSIAS+ HP GP+P+QLHLCVAVV+FRTPYKR R+GLCSSYLASL G+ VPLWI+PGSF+LP P TPL+MVGPGTG+APFKAMVEERAAQRK + + G+ + GE R PP++ LF+GCRKE+VDFYYR ELE YT +GG +EG G EG L LVTAFSRD+ G K+YVTHRL+EEG LW LL GEG G G ASFFVAGSAKRMPTDV +LKGVA EG L EA +FLD LVRARRYCVESW+V
Sbjct: 112 PTSSMADGGSDHRSQRLIVLYGSQTGTAQDLGEELARKGRRRGFSPVELQAWDDYDVTRLPEETLLLAVVSTTGDGEEPDNMRKSWRFLLRKALPAGSLGRLRFGTFGLGDSTYPKFNAVARRLHTRLKQLGAKPLVEIGLGDDQSPRGVLGDFDTWCQSMWPALHALCPGVLLPPDVNRPALEPLIYDCQVVEICTGGAG-DDVGDAAALGHRAAPNYPNAQEGEEED--LDDLPAFYQRPYGARNPGPRPFPARLLVNKRLTPDDWFQETRHLEFDLGGFL---EGAGQGR----DEDKCGG--------PQGTRQERQPYQAGDVAYLYPENRPNAVSAFLRLCNLHPQTILRIRHHPEGKALTDLSGPGDVPSECRAATLFRRYLDINAVPKRAVLEQLALLAENPEERDKLLELSSPEGADLYHEYCYREKRSVGEVLQDFPSVRPSLSRLLSLLPRLRPRAFSIASSSHPLGPSPNQLHLCVAVVAFRTPYKRHRQGLCSSYLASLSPGKRVPLWIRPGSFLLPPDPRTPLIMVGPGTGVAPFKAMVEERAAQRKAMASAANGRHDVGGKANVEGEGSVVSNRPPPYEWLFYGCRKEKVDFYYRKELEGYTREGKGGDEEGRG--EGGLVLVTAFSRDRADGSKLYVTHRLQEEGPRLWPLLAGEG-GPGLDPVTNKELASFFVAGSAKRMPTDVLNTLKGVAATEGRLEGKEAGQFLDGLVRARRYCVESWSV 830
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03500.1 ID=NO06G03500.1|Name=NO06G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp ATTTTTAACAAGGTTTTTCTTGTTTTTTCTTGTTTTTTCCTTTTTTCGTT GTTTGATTGATTGATTCTTTTTTGAGATCAATAATAGTCCTGGTCAAGCC TCGTAGTATATCGAAATATATCAGTAGTCATAATAAATCAATAGCATGTA TGGTGGATTATTGATTGATTAATTTCTCGTGTATGAAACTGTGTGTCTTT GAACCTCCTCTCCGACGGCATCGTCGTCATGCACGTGCCTCTTCACTTCT GAGATTTCTAACGTCACACCTCTCTCCTACATACAGTATGGCGCAACGCC TCGTCGTCCTCTACGGCAGCCAGACGGGGACGGCCCAGGACATGGCGGAA GAGTTGGGGCGGAAAGGTAAACGACGCGGCTTTTCCCCTGTAGAAGTCCA AGCATGGGACAGCTACGACGTGACCCGCCTGCCGGAGGAGACCTTTGTCT TGGCTGTGGTCAGCACGACAGGCGACGGGGAAGAACCGGACAACATGCGG AAATCCTGGGGCTTTTTACTGCGCAAGGCCTTGCCGATGGGCTCGTTGAG TGGGCTGCGCTTTGCGACGTTTGGCCTGGGCGACACTAGCTACCCAAAAT TTAATGCGGTGGCCCGTCGACTTCACATACGACTCAAGCAACTGGGCGCA ACACCCTTTGTGGAATGCGGATTAGGGGACGATCAGAGCGCACGTGGGGT ACTAGGCGATTTTGACGAGTGGTGCCAGGTCATGTGGCCGGCTTTGCATG CCTTGTGTCCTGAGATGGTGATCCCACCCAATGTTGACATGCCGGCATCG GAGCCTGTGCTTTATGCTTGTCGGATCGAGGGGACGAGTACATCAAATGA GAAAATTAGTACTGCTTCAAACGGTTGTGCTGCTGTCGATCAGCAAGCAC CGCCATGGCCAGGAGAAGCAGGAGCTGACCAGGAATACGACCTGCTAGAG GACTTGCCAGGGTTCTACCAAAAGCCTCACGGAGCCCGGAATCCAAGCTC GCAGCCGTTCCTCGCTCGATTAATGGTGAATAAACGCCTGACTCCAGATG ATTGGTTTCAAGAAACGCGGCATTTGGAGTGGGATTTGCGGGGTTTTACG AGAGAGGAAGAAGGGAGTAGCAGAAGTAAAAGTAGTAGCGGTAGCAGCAG CAGCTGCAACGGCCATAGCAACGGGGATAGGAAGCAGCAGCAACAGCAGC AGCAACAGCAGCAAGCCTATAAGGCTGGCGATGTTGCACATCTCTATCCT CAAAACCCCCCTGAAGCCGTCTCTGCTATCCTCGCCCTCCTCAGTCTCCA ACCTACCGACAAGCTCTATATCGAGCGTCTACCCGAGCCGTCCCCTCCCC ACACCCTTCCCCCACGCGATTTGCCGCCCACCTGCACCGCCTTTATTCTC TTTCTCCGATACCTTGACATTACGGCTGTCCCGAAGCGGGCTTTGCTAGA GCAATTGGCTCTCCTGGCCACCAATGAGGAAGAACGAGAAAAACTCTTCG AGCTCGCTTCCCCAGACGGTGCTGATCTCTACAACGATTACTGCTACAGG GAGAAACGCTCCCTAGTGGAAGTTCTGCAGGACTTCCCCTCCGCCCGCCC ATCCCTCCCTCAGCTCCTCACTCTTCTACCACGCCTGCGTCCACGTGCGT TCAGCATTGCCTCTACTTGTCATCCCTCGGGCCCCACCCCCCACCAGCTC CACCTCTGCGTCGCTGTCGTGAGCTTCCGCACCCCCTACAAGAGACAGCG CCGAGGCCTTTGTTCCTCGTACTTGGCCTCCTTACCCGTCGGCAGGCACG TGCCTTTGTGGATCAAGCCGGGCTCGTTCGTGTTACCGGCAAGCCCATGG ACCCCCCTGGTGATGGTTGGGCCTGGCACTGGCATTGCGCCCTTCAAGGC CATGGTGGAGGAAAGGGCAGCGCAGCGGAAGGAGGAGGAAGAAAAGCAGT TGCAGCAGGTGCAGATAGATGGACAGGGGATAGGAGGGGAGAGAACGAGG GTGCCACCGTTTGATAGGCTGTTCTTTGGGTGTCGGAAGGAGCAGGTGGA TTTCTACTATAGGGCTGAGCTAGAAAAATACACCCAGGGAGGGGGAAAGG AGGGAGGGGGAGGAAGGGAGGGAGAGCTTGCGTTGGTGACGGCTTTTTCG CGGGATCAGGAAGGAGGACGGAAGGTCTATGTAACGCATCGGTTGGAAGA GGAGGGGGCGGTGCTGTGGCGCTTGTTGGGAGGGGAGGGAAGGGGGGAGG GAGGCAAGGCGTCATTTTTTGTGGCGGGCTCGGCGAAGCGTATGCCGACT GACGTGTTCGAGAGTTTGAAGGGGGTGGCGGTGAGGGAGGGAGGGTTGAG CGAGGTGGAAGCGACCAAGTTTTTGGATCGGTTGGTGCGGGCGAGGAGGT ACTGTGTGGAGTCTTGGGCGGTTTGAGGGGGGC back to topprotein sequence of NO06G03500.1 >NO06G03500.1-protein ID=NO06G03500.1-protein|Name=NO06G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=748bp MKLCVFEPPLRRHRRHARASSLLRFLTSHLSPTYSMAQRLVVLYGSQTGT AQDMAEELGRKGKRRGFSPVEVQAWDSYDVTRLPEETFVLAVVSTTGDGE EPDNMRKSWGFLLRKALPMGSLSGLRFATFGLGDTSYPKFNAVARRLHIR LKQLGATPFVECGLGDDQSARGVLGDFDEWCQVMWPALHALCPEMVIPPN VDMPASEPVLYACRIEGTSTSNEKISTASNGCAAVDQQAPPWPGEAGADQ EYDLLEDLPGFYQKPHGARNPSSQPFLARLMVNKRLTPDDWFQETRHLEW DLRGFTREEEGSSRSKSSSGSSSSCNGHSNGDRKQQQQQQQQQQAYKAGD VAHLYPQNPPEAVSAILALLSLQPTDKLYIERLPEPSPPHTLPPRDLPPT CTAFILFLRYLDITAVPKRALLEQLALLATNEEEREKLFELASPDGADLY NDYCYREKRSLVEVLQDFPSARPSLPQLLTLLPRLRPRAFSIASTCHPSG PTPHQLHLCVAVVSFRTPYKRQRRGLCSSYLASLPVGRHVPLWIKPGSFV LPASPWTPLVMVGPGTGIAPFKAMVEERAAQRKEEEEKQLQQVQIDGQGI GGERTRVPPFDRLFFGCRKEQVDFYYRAELEKYTQGGGKEGGGGREGELA LVTAFSRDQEGGRKVYVTHRLEEEGAVLWRLLGGEGRGEGGKASFFVAGS AKRMPTDVFESLKGVAVREGGLSEVEATKFLDRLVRARRYCVESWAV* back to topmRNA from alignment at chr6:965903..968335+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03500.1 ID=NO06G03500.1|Name=NO06G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2433bp|location=Sequence derived from alignment at chr6:965903..968335+ (Nannochloropsis oceanica) ATTTTTAACAAGGTTTTTCTTGTTTTTTCTTGTTTTTTCCTTTTTTCGTT
GTTTGATTGATTGATTCTTTTTTGAGATCAATAATAGTCCTGGTCAAGCC
TCGTAGTATATCGAAATATATCAGTAGTCATAATAAATCAATAGCATGTA
TGGTGGATTATTGATTGATTAATTTCTCGTGTATGAAACTGTGTGTCTTT
GAACCTCCTCTCCGACGGCATCGTCGTCATGCACGTGCCTCTTCACTTCT
GAGATTTCTAACGTCACACCTCTCTCCTACATACAGTATGGCGCAACGCC
TCGTCGTCCTCTACGGCAGCCAGACGGGGACGGCCCAGGACATGGCGGAA
GAGTTGGGGCGGAAAGGTAAACGACGCGGCTTTTCCCCTGTAGAAGTCCA
AGCATGGGACAGCTACGACGTGACCCGCCTGCCGGAGGAGACCTTTGTCT
TGGCTGTGGTCAGCACGACAGGCGACGGGGAAGAACCGGACAACATGCGG
AAATCCTGGGGCTTTTTACTGCGCAAGGCCTTGCCGATGGGCTCGTTGAG
TGGGCTGCGCTTTGCGACGTTTGGCCTGGGCGACACTAGCTACCCAAAAT
TTAATGCGGTGGCCCGTCGACTTCACATACGACTCAAGCAACTGGGCGCA
ACACCCTTTGTGGAATGCGGATTAGGGGACGATCAGAGCGCACGTGGGGT
ACTAGGCGATTTTGACGAGTGGTGCCAGGTCATGTGGCCGGCTTTGCATG
CCTTGTGTCCTGAGATGGTGATCCCACCCAATGTTGACATGCCGGCATCG
GAGCCTGTGCTTTATGCTTGTCGGATCGAGGGGACGAGTACATCAAATGA
GAAAATTAGTACTGCTTCAAACGGTTGTGCTGCTGTCGATCAGCAAGCAC
CGCCATGGCCAGGAGAAGCAGGAGCTGACCAGGAATACGACCTGCTAGAG
GACTTGCCAGGGTTCTACCAAAAGCCTCACGGAGCCCGGAATCCAAGCTC
GCAGCCGTTCCTCGCTCGATTAATGGTGAATAAACGCCTGACTCCAGATG
ATTGGTTTCAAGAAACGCGGCATTTGGAGTGGGATTTGCGGGGTTTTACG
AGAGAGGAAGAAGGGAGTAGCAGAAGTAAAAGTAGTAGCGGTAGCAGCAG
CAGCTGCAACGGCCATAGCAACGGGGATAGGAAGCAGCAGCAACAGCAGC
AGCAACAGCAGCAAGCCTATAAGGCTGGCGATGTTGCACATCTCTATCCT
CAAAACCCCCCTGAAGCCGTCTCTGCTATCCTCGCCCTCCTCAGTCTCCA
ACCTACCGACAAGCTCTATATCGAGCGTCTACCCGAGCCGTCCCCTCCCC
ACACCCTTCCCCCACGCGATTTGCCGCCCACCTGCACCGCCTTTATTCTC
TTTCTCCGATACCTTGACATTACGGCTGTCCCGAAGCGGGCTTTGCTAGA
GCAATTGGCTCTCCTGGCCACCAATGAGGAAGAACGAGAAAAACTCTTCG
AGCTCGCTTCCCCAGACGGTGCTGATCTCTACAACGATTACTGCTACAGG
GAGAAACGCTCCCTAGTGGAAGTTCTGCAGGACTTCCCCTCCGCCCGCCC
ATCCCTCCCTCAGCTCCTCACTCTTCTACCACGCCTGCGTCCACGTGCGT
TCAGCATTGCCTCTACTTGTCATCCCTCGGGCCCCACCCCCCACCAGCTC
CACCTCTGCGTCGCTGTCGTGAGCTTCCGCACCCCCTACAAGAGACAGCG
CCGAGGCCTTTGTTCCTCGTACTTGGCCTCCTTACCCGTCGGCAGGCACG
TGCCTTTGTGGATCAAGCCGGGCTCGTTCGTGTTACCGGCAAGCCCATGG
ACCCCCCTGGTGATGGTTGGGCCTGGCACTGGCATTGCGCCCTTCAAGGC
CATGGTGGAGGAAAGGGCAGCGCAGCGGAAGGAGGAGGAAGAAAAGCAGT
TGCAGCAGGTGCAGATAGATGGACAGGGGATAGGAGGGGAGAGAACGAGG
GTGCCACCGTTTGATAGGCTGTTCTTTGGGTGTCGGAAGGAGCAGGTGGA
TTTCTACTATAGGGCTGAGCTAGAAAAATACACCCAGGGAGGGGGAAAGG
AGGGAGGGGGAGGAAGGGAGGGAGAGCTTGCGTTGGTGACGGCTTTTTCG
CGGGATCAGGAAGGAGGACGGAAGGTCTATGTAACGCATCGGTTGGAAGA
GGAGGGGGCGGTGCTGTGGCGCTTGTTGGGAGGGGAGGGAAGGGGGGAGG
GAGGCAAGGCGTCATTTTTTGTGGCGGGCTCGGCGAAGCGTATGCCGACT
GACGTGTTCGAGAGTTTGAAGGGGGTGGCGGTGAGGGAGGGAGGGTTGAG
CGAGGTGGAAGCGACCAAGTTTTTGGATCGGTTGGTGCGGGCGAGGAGGT
ACTGTGTGGAGTCTTGGGCGGTTTGAGGGGGGC back to topCoding sequence (CDS) from alignment at chr6:965903..968335+ >NO06G03500.1 ID=NO06G03500.1|Name=NO06G03500.1|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at chr6:965903..968335+ (Nannochloropsis oceanica) ATGAAACTGTGTGTCTTTGAACCTCCTCTCCGACGGCATCGTCGTCATGC ACGTGCCTCTTCACTTCTGAGATTTCTAACGTCACACCTCTCTCCTACAT ACAGTATGGCGCAACGCCTCGTCGTCCTCTACGGCAGCCAGACGGGGACG GCCCAGGACATGGCGGAAGAGTTGGGGCGGAAAGGTAAACGACGCGGCTT TTCCCCTGTAGAAGTCCAAGCATGGGACAGCTACGACGTGACCCGCCTGC CGGAGGAGACCTTTGTCTTGGCTGTGGTCAGCACGACAGGCGACGGGGAA GAACCGGACAACATGCGGAAATCCTGGGGCTTTTTACTGCGCAAGGCCTT GCCGATGGGCTCGTTGAGTGGGCTGCGCTTTGCGACGTTTGGCCTGGGCG ACACTAGCTACCCAAAATTTAATGCGGTGGCCCGTCGACTTCACATACGA CTCAAGCAACTGGGCGCAACACCCTTTGTGGAATGCGGATTAGGGGACGA TCAGAGCGCACGTGGGGTACTAGGCGATTTTGACGAGTGGTGCCAGGTCA TGTGGCCGGCTTTGCATGCCTTGTGTCCTGAGATGGTGATCCCACCCAAT GTTGACATGCCGGCATCGGAGCCTGTGCTTTATGCTTGTCGGATCGAGGG GACGAGTACATCAAATGAGAAAATTAGTACTGCTTCAAACGGTTGTGCTG CTGTCGATCAGCAAGCACCGCCATGGCCAGGAGAAGCAGGAGCTGACCAG GAATACGACCTGCTAGAGGACTTGCCAGGGTTCTACCAAAAGCCTCACGG AGCCCGGAATCCAAGCTCGCAGCCGTTCCTCGCTCGATTAATGGTGAATA AACGCCTGACTCCAGATGATTGGTTTCAAGAAACGCGGCATTTGGAGTGG GATTTGCGGGGTTTTACGAGAGAGGAAGAAGGGAGTAGCAGAAGTAAAAG TAGTAGCGGTAGCAGCAGCAGCTGCAACGGCCATAGCAACGGGGATAGGA AGCAGCAGCAACAGCAGCAGCAACAGCAGCAAGCCTATAAGGCTGGCGAT GTTGCACATCTCTATCCTCAAAACCCCCCTGAAGCCGTCTCTGCTATCCT CGCCCTCCTCAGTCTCCAACCTACCGACAAGCTCTATATCGAGCGTCTAC CCGAGCCGTCCCCTCCCCACACCCTTCCCCCACGCGATTTGCCGCCCACC TGCACCGCCTTTATTCTCTTTCTCCGATACCTTGACATTACGGCTGTCCC GAAGCGGGCTTTGCTAGAGCAATTGGCTCTCCTGGCCACCAATGAGGAAG AACGAGAAAAACTCTTCGAGCTCGCTTCCCCAGACGGTGCTGATCTCTAC AACGATTACTGCTACAGGGAGAAACGCTCCCTAGTGGAAGTTCTGCAGGA CTTCCCCTCCGCCCGCCCATCCCTCCCTCAGCTCCTCACTCTTCTACCAC GCCTGCGTCCACGTGCGTTCAGCATTGCCTCTACTTGTCATCCCTCGGGC CCCACCCCCCACCAGCTCCACCTCTGCGTCGCTGTCGTGAGCTTCCGCAC CCCCTACAAGAGACAGCGCCGAGGCCTTTGTTCCTCGTACTTGGCCTCCT TACCCGTCGGCAGGCACGTGCCTTTGTGGATCAAGCCGGGCTCGTTCGTG TTACCGGCAAGCCCATGGACCCCCCTGGTGATGGTTGGGCCTGGCACTGG CATTGCGCCCTTCAAGGCCATGGTGGAGGAAAGGGCAGCGCAGCGGAAGG AGGAGGAAGAAAAGCAGTTGCAGCAGGTGCAGATAGATGGACAGGGGATA GGAGGGGAGAGAACGAGGGTGCCACCGTTTGATAGGCTGTTCTTTGGGTG TCGGAAGGAGCAGGTGGATTTCTACTATAGGGCTGAGCTAGAAAAATACA CCCAGGGAGGGGGAAAGGAGGGAGGGGGAGGAAGGGAGGGAGAGCTTGCG TTGGTGACGGCTTTTTCGCGGGATCAGGAAGGAGGACGGAAGGTCTATGT AACGCATCGGTTGGAAGAGGAGGGGGCGGTGCTGTGGCGCTTGTTGGGAG GGGAGGGAAGGGGGGAGGGAGGCAAGGCGTCATTTTTTGTGGCGGGCTCG GCGAAGCGTATGCCGACTGACGTGTTCGAGAGTTTGAAGGGGGTGGCGGT GAGGGAGGGAGGGTTGAGCGAGGTGGAAGCGACCAAGTTTTTGGATCGGT TGGTGCGGGCGAGGAGGTACTGTGTGGAGTCTTGGGCGGTTTGA back to top
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