NO06G03450.1, NO06G03450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03450.1
Unique NameNO06G03450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2745
Alignment locationchr6:953861..956605 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:953861..956605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G03450.1 vs.
Match: EWM26337.1 (hypothetical protein Naga_100078g23 [Nannochloropsis gaditana])

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-13
Identity = 80/207 (38.65%), Postives = 106/207 (51.21%), Query Frame = 0
Query:   18 HLRRQRCVAWPLLAAAAAASSSSLLLTVEAVAAAASVSSFPPGARRGARRPLPVPPTAAAQEPGQADLYTGVPSSSPRDGANEQQEHQQYQNQQYNQQ--QQEARRDVGREDEDAYEEKRLQLPPVSLLDEYLPLLLEDIQRVDDEFDEELELMFDNLGASLGFPIPQKMGGPLPSSSGAPLRGRNEMKKRKKQKAAVDEEVLSPGG 223
            H RR+R V WPLLAAAAAASSS ++L   A   +  +SS PP ARRG+RR    P   +  + G             R+G   Q   ++   Q+           R     + D  EEKR+QLP VSLLDEYLPLLLEDIQ VD E D EL+ MF++L AS   P P+++                E K +++  A+   +V+S  G
Sbjct:    9 HRRRRRRVTWPLLAAAAAASSSKVVLAAAATTTSPPLSSLPPAARRGSRRVPDAPIKPSRTQEG-------------REGHAPQALGRRSSRQESKPLGGTDGTTRRANDNNIDNTEEKRVQLPQVSLLDEYLPLLLEDIQVVDQELDLELQQMFEDLYASPDLPSPRRLSS-------------REAKSQRRGMASAFSDVVSGVG 189          
The following BLAST results are available for this feature:
BLAST of NO06G03450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26337.11.300e-1338.65hypothetical protein Naga_100078g23 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03450NO06G03450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03450.1NO06G03450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03450.1.cds1NO06G03450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03450.1 ID=NO06G03450.1|Name=NO06G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2745bp
CAACAGGCACGAGCCAAACGATGCCTTCTCCATCAAGCCCCATGCGGCAC
TACCAACATCATCAGCATCAGCACCTTCGTCGACAACGCTGCGTCGCATG
GCCGCTCCTAGCCGCCGCCGCCGCCGCCTCATCCTCCAGCCTCCTCCTTA
CAGTTGAAGCGGTGGCCGCGGCAGCATCCGTGTCGTCCTTTCCTCCCGGT
GCCCGCCGGGGTGCCCGTCGTCCTCTCCCTGTGCCGCCCACGGCAGCTGC
ACAAGAGCCAGGGCAAGCGGACCTGTACACAGGAGTGCCGTCTTCTTCCC
CTCGTGATGGCGCCAATGAGCAGCAGGAGCACCAGCAATACCAGAATCAG
CAGTACAACCAACAACAGCAGGAAGCAAGGAGGGATGTAGGGCGGGAAGA
CGAAGATGCTTACGAGGAAAAACGCTTGCAGCTGCCGCCAGTGTCCCTGC
TAGATGAGTACTTGCCTTTATTACTAGAAGATATCCAGCGAGTCGATGAT
GAATTTGATGAAGAGCTCGAGCTCATGTTTGATAACTTGGGTGCGTCTTT
GGGGTTTCCAATCCCACAGAAGATGGGTGGGCCTCTTCCGTCGTCGTCTG
GTGCCCCTCTCCGTGGGAGAAACGAGATGAAGAAGAGGAAAAAACAGAAG
GCGGCGGTGGATGAGGAAGTATTGTCGCCGGGGGGAAAGGAAGACAGCGG
GACAAGTGGTGTGGAGGAGAAGGCGAGAGAGAAAGATGTACGAAGCGGGG
TTATCACAATGAAGGCACTCGCTCGACAGCGTCGTCGCTCGGTCGGGGCT
GCGGAGGCATCGTCTGTGTTAGAGGAGGGCGAAAACGAGGTGGAGATTTT
GTCGACAAAAAGCAAAAAAGCAAAAAAACGCAGCAACATTGGCAACATCA
TCAGCAGCAGCAGCAGCGTAAAGAAGGGGAGGACGACGAGGAAGGACGGG
AAGAGGGGAAGACTTGCTTTCGAGAGGAAGTCTCTCGCACAGCTGACAAG
TTCGACGAGCACTAAGAAGAAGAGCAAAAAGGCTAGAAAGAACGCCGGCT
TCCCGTCATCCCCCGCCTCTTCTCGCCGCCTCCTCTCCTCCTCTTCCTCT
CACCACAATCTCCGCAAAAACAAGAAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCGATTTCGCC
AGTCTTCCCTCCCCCTCACCCCCTCGCGTACCTCAGGCTGGGCGATGGCG
GGCGCGTCTATCTCCGGCTTTGGGTGGGCTTGCTTAGCCGTACAAGAGAT
CCAAAATGCCGGTCTTCAGAGCCAATACAATTACCTTCTCAACCCTACAC
AGGTTCTTCTCAGCCTGACTGTTGGGCCTGCTCTCATCTTCCTTCACGGG
GGAAAGCAGCTCATCTACCCCTCCTCCCTCTCTGCCTCCTCTCCCCTCTC
CCCACTCACCAATCATCGAGGCTCCTATTTTCTACTGGCCTTGACGTGGT
TCTCCCTCGTTTTCGCTGCATTTGGCTTGCTAACCTTGGCACAGACTCGT
CCTTCCTCCGTCATTGCAGTTGCCCTTCTAGTCCTCCCCCTCCTCCACAG
CACCCCGCACACGCACAACCCCTCGTACACAGACGAAGACGAATATGAGG
AGGAGGAGGAAGAGGGGGACGGAGACTCAACACCCTCCTCCCGGACCCGA
TCTTCTTCCAGCCTCATTTCCACCGGCGTTATCTCCGCCCTCCTCACCGT
CGGTCTTCCTTTGAGCTTGACAGAGGCAGGGCTGCTCCTCCGTTCCTCCC
CCCCTACCTCTACCTCGGGACATTCGTGGATTTGGAAATTGGGGTTTTTG
GGACTGTCTGTTGGACTGAGCCAGATGTCAGTCACTACCTTTCGAGATGC
CCAGGCACAGACGGAGGTATTGGGACAGGACGAGGAGGATGAGGAGGGGG
GGATGGAGGAGGGGGAGATGAGATTGAGTCGGGCAGGAAAACAAGTAAGG
TTATTGGGAGCGTTGTCGACGCTGGCATTGTGTGTGGGGGGGATGGGGCC
CGGGGTGGTGGTGGGCAGTTTGGTCCATTTGCTGGTGTTATCAAAATTAT
CGACGGGAGAGAGGGTGTGGGGGAGGGTGGGGAGGACGATGGCGGAGATG
CAGGGAGGGGTATGGGCATTGATGGCTTCATTGGTGGGGGAAGCGATGAG
CTTGCCGGCTTTGGAAGGGGAGGAGGAGGTAGGGATACGGACAGAGAGGC
TTGGGGGGAAGACGGAGGAGGATGAGAAAATGTATATGGAGGTGGAGGAG
AAAGGCGTTGCCAATTTGGTGGCGGCTTTGAAGAAACAGCAGCTACGGCA
AGAGGCCACCAAGGTCAAGAATGAGTACGAGCGATTATCATCCCCTTTAT
TCGCCTCCTCTCCTGTCTCGTCCTCCTCCACAGCGGTCAGCAGCAGCAGC
AGCGGCAGCAGCCGCGGATCATCAGAGGCGGAAGACGAGGAGCGCTTGGG
CTTGCCGTTGCCTCCTTCTTGACACTATTCATAATGACTCAAAAGATAAG
ATAAAACAGTAACTAGGAGGAGAAAGACAGAGAGAAAAAGGCGCAGTCCA
GTCTTATGTGTAATGTGATTTATTGTCGATTAAGGTCCCGATTTGAAATG
GAAAGGGAAAAGAATGAAGATGGAAGGACGACAAACAGAAGAGATACTGA
ACTCGATTGTGCTATAGCAAGATATGACATTGCAAGCGTGGTTGG
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protein sequence of NO06G03450.1

>NO06G03450.1-protein ID=NO06G03450.1-protein|Name=NO06G03450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=834bp
MPSPSSPMRHYQHHQHQHLRRQRCVAWPLLAAAAAASSSSLLLTVEAVAA
AASVSSFPPGARRGARRPLPVPPTAAAQEPGQADLYTGVPSSSPRDGANE
QQEHQQYQNQQYNQQQQEARRDVGREDEDAYEEKRLQLPPVSLLDEYLPL
LLEDIQRVDDEFDEELELMFDNLGASLGFPIPQKMGGPLPSSSGAPLRGR
NEMKKRKKQKAAVDEEVLSPGGKEDSGTSGVEEKAREKDVRSGVITMKAL
ARQRRRSVGAAEASSVLEEGENEVEILSTKSKKAKKRSNIGNIISSSSSV
KKGRTTRKDGKRGRLAFERKSLAQLTSSTSTKKKSKKARKNAGFPSSPAS
SRRLLSSSSSHHNLRKNKKQQQQQQQQQQQQQQQQQQQQQRFRQSSLPLT
PSRTSGWAMAGASISGFGWACLAVQEIQNAGLQSQYNYLLNPTQVLLSLT
VGPALIFLHGGKQLIYPSSLSASSPLSPLTNHRGSYFLLALTWFSLVFAA
FGLLTLAQTRPSSVIAVALLVLPLLHSTPHTHNPSYTDEDEYEEEEEEGD
GDSTPSSRTRSSSSLISTGVISALLTVGLPLSLTEAGLLLRSSPPTSTSG
HSWIWKLGFLGLSVGLSQMSVTTFRDAQAQTEVLGQDEEDEEGGMEEGEM
RLSRAGKQVRLLGALSTLALCVGGMGPGVVVGSLVHLLVLSKLSTGERVW
GRVGRTMAEMQGGVWALMASLVGEAMSLPALEGEEEVGIRTERLGGKTEE
DEKMYMEVEEKGVANLVAALKKQQLRQEATKVKNEYERLSSPLFASSPVS
SSSTAVSSSSSGSSRGSSEAEDEERLGLPLPPS*
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mRNA from alignment at chr6:953861..956605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03450.1 ID=NO06G03450.1|Name=NO06G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2745bp|location=Sequence derived from alignment at chr6:953861..956605- (Nannochloropsis oceanica)
CAACAGGCACGAGCCAAACGATGCCTTCTCCATCAAGCCCCATGCGGCAC TACCAACATCATCAGCATCAGCACCTTCGTCGACAACGCTGCGTCGCATG GCCGCTCCTAGCCGCCGCCGCCGCCGCCTCATCCTCCAGCCTCCTCCTTA CAGTTGAAGCGGTGGCCGCGGCAGCATCCGTGTCGTCCTTTCCTCCCGGT GCCCGCCGGGGTGCCCGTCGTCCTCTCCCTGTGCCGCCCACGGCAGCTGC ACAAGAGCCAGGGCAAGCGGACCTGTACACAGGAGTGCCGTCTTCTTCCC CTCGTGATGGCGCCAATGAGCAGCAGGAGCACCAGCAATACCAGAATCAG CAGTACAACCAACAACAGCAGGAAGCAAGGAGGGATGTAGGGCGGGAAGA CGAAGATGCTTACGAGGAAAAACGCTTGCAGCTGCCGCCAGTGTCCCTGC TAGATGAGTACTTGCCTTTATTACTAGAAGATATCCAGCGAGTCGATGAT GAATTTGATGAAGAGCTCGAGCTCATGTTTGATAACTTGGGTGCGTCTTT GGGGTTTCCAATCCCACAGAAGATGGGTGGGCCTCTTCCGTCGTCGTCTG GTGCCCCTCTCCGTGGGAGAAACGAGATGAAGAAGAGGAAAAAACAGAAG GCGGCGGTGGATGAGGAAGTATTGTCGCCGGGGGGAAAGGAAGACAGCGG GACAAGTGGTGTGGAGGAGAAGGCGAGAGAGAAAGATGTACGAAGCGGGG TTATCACAATGAAGGCACTCGCTCGACAGCGTCGTCGCTCGGTCGGGGCT GCGGAGGCATCGTCTGTGTTAGAGGAGGGCGAAAACGAGGTGGAGATTTT GTCGACAAAAAGCAAAAAAGCAAAAAAACGCAGCAACATTGGCAACATCA TCAGCAGCAGCAGCAGCGTAAAGAAGGGGAGGACGACGAGGAAGGACGGG AAGAGGGGAAGACTTGCTTTCGAGAGGAAGTCTCTCGCACAGCTGACAAG TTCGACGAGCACTAAGAAGAAGAGCAAAAAGGCTAGAAAGAACGCCGGCT TCCCGTCATCCCCCGCCTCTTCTCGCCGCCTCCTCTCCTCCTCTTCCTCT CACCACAATCTCCGCAAAAACAAGAAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCGATTTCGCC AGTCTTCCCTCCCCCTCACCCCCTCGCGTACCTCAGGCTGGGCGATGGCG GGCGCGTCTATCTCCGGCTTTGGGTGGGCTTGCTTAGCCGTACAAGAGAT CCAAAATGCCGGTCTTCAGAGCCAATACAATTACCTTCTCAACCCTACAC AGGTTCTTCTCAGCCTGACTGTTGGGCCTGCTCTCATCTTCCTTCACGGG GGAAAGCAGCTCATCTACCCCTCCTCCCTCTCTGCCTCCTCTCCCCTCTC CCCACTCACCAATCATCGAGGCTCCTATTTTCTACTGGCCTTGACGTGGT TCTCCCTCGTTTTCGCTGCATTTGGCTTGCTAACCTTGGCACAGACTCGT CCTTCCTCCGTCATTGCAGTTGCCCTTCTAGTCCTCCCCCTCCTCCACAG CACCCCGCACACGCACAACCCCTCGTACACAGACGAAGACGAATATGAGG AGGAGGAGGAAGAGGGGGACGGAGACTCAACACCCTCCTCCCGGACCCGA TCTTCTTCCAGCCTCATTTCCACCGGCGTTATCTCCGCCCTCCTCACCGT CGGTCTTCCTTTGAGCTTGACAGAGGCAGGGCTGCTCCTCCGTTCCTCCC CCCCTACCTCTACCTCGGGACATTCGTGGATTTGGAAATTGGGGTTTTTG GGACTGTCTGTTGGACTGAGCCAGATGTCAGTCACTACCTTTCGAGATGC CCAGGCACAGACGGAGGTATTGGGACAGGACGAGGAGGATGAGGAGGGGG GGATGGAGGAGGGGGAGATGAGATTGAGTCGGGCAGGAAAACAAGTAAGG TTATTGGGAGCGTTGTCGACGCTGGCATTGTGTGTGGGGGGGATGGGGCC CGGGGTGGTGGTGGGCAGTTTGGTCCATTTGCTGGTGTTATCAAAATTAT CGACGGGAGAGAGGGTGTGGGGGAGGGTGGGGAGGACGATGGCGGAGATG CAGGGAGGGGTATGGGCATTGATGGCTTCATTGGTGGGGGAAGCGATGAG CTTGCCGGCTTTGGAAGGGGAGGAGGAGGTAGGGATACGGACAGAGAGGC TTGGGGGGAAGACGGAGGAGGATGAGAAAATGTATATGGAGGTGGAGGAG AAAGGCGTTGCCAATTTGGTGGCGGCTTTGAAGAAACAGCAGCTACGGCA AGAGGCCACCAAGGTCAAGAATGAGTACGAGCGATTATCATCCCCTTTAT TCGCCTCCTCTCCTGTCTCGTCCTCCTCCACAGCGGTCAGCAGCAGCAGC AGCGGCAGCAGCCGCGGATCATCAGAGGCGGAAGACGAGGAGCGCTTGGG CTTGCCGTTGCCTCCTTCTTGACACTATTCATAATGACTCAAAAGATAAG ATAAAACAGTAACTAGGAGGAGAAAGACAGAGAGAAAAAGGCGCAGTCCA GTCTTATGTGTAATGTGATTTATTGTCGATTAAGGTCCCGATTTGAAATG GAAAGGGAAAAGAATGAAGATGGAAGGACGACAAACAGAAGAGATACTGA ACTCGATTGTGCTATAGCAAGATATGACATTGCAAGCGTGGTTGG
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Coding sequence (CDS) from alignment at chr6:953861..956605-

>NO06G03450.1 ID=NO06G03450.1|Name=NO06G03450.1|organism=Nannochloropsis oceanica|type=CDS|length=2502bp|location=Sequence derived from alignment at chr6:953861..956605- (Nannochloropsis oceanica)
ATGCCTTCTCCATCAAGCCCCATGCGGCACTACCAACATCATCAGCATCA
GCACCTTCGTCGACAACGCTGCGTCGCATGGCCGCTCCTAGCCGCCGCCG
CCGCCGCCTCATCCTCCAGCCTCCTCCTTACAGTTGAAGCGGTGGCCGCG
GCAGCATCCGTGTCGTCCTTTCCTCCCGGTGCCCGCCGGGGTGCCCGTCG
TCCTCTCCCTGTGCCGCCCACGGCAGCTGCACAAGAGCCAGGGCAAGCGG
ACCTGTACACAGGAGTGCCGTCTTCTTCCCCTCGTGATGGCGCCAATGAG
CAGCAGGAGCACCAGCAATACCAGAATCAGCAGTACAACCAACAACAGCA
GGAAGCAAGGAGGGATGTAGGGCGGGAAGACGAAGATGCTTACGAGGAAA
AACGCTTGCAGCTGCCGCCAGTGTCCCTGCTAGATGAGTACTTGCCTTTA
TTACTAGAAGATATCCAGCGAGTCGATGATGAATTTGATGAAGAGCTCGA
GCTCATGTTTGATAACTTGGGTGCGTCTTTGGGGTTTCCAATCCCACAGA
AGATGGGTGGGCCTCTTCCGTCGTCGTCTGGTGCCCCTCTCCGTGGGAGA
AACGAGATGAAGAAGAGGAAAAAACAGAAGGCGGCGGTGGATGAGGAAGT
ATTGTCGCCGGGGGGAAAGGAAGACAGCGGGACAAGTGGTGTGGAGGAGA
AGGCGAGAGAGAAAGATGTACGAAGCGGGGTTATCACAATGAAGGCACTC
GCTCGACAGCGTCGTCGCTCGGTCGGGGCTGCGGAGGCATCGTCTGTGTT
AGAGGAGGGCGAAAACGAGGTGGAGATTTTGTCGACAAAAAGCAAAAAAG
CAAAAAAACGCAGCAACATTGGCAACATCATCAGCAGCAGCAGCAGCGTA
AAGAAGGGGAGGACGACGAGGAAGGACGGGAAGAGGGGAAGACTTGCTTT
CGAGAGGAAGTCTCTCGCACAGCTGACAAGTTCGACGAGCACTAAGAAGA
AGAGCAAAAAGGCTAGAAAGAACGCCGGCTTCCCGTCATCCCCCGCCTCT
TCTCGCCGCCTCCTCTCCTCCTCTTCCTCTCACCACAATCTCCGCAAAAA
CAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AACAACAGCAGCAGCAGCAGCGATTTCGCCAGTCTTCCCTCCCCCTCACC
CCCTCGCGTACCTCAGGCTGGGCGATGGCGGGCGCGTCTATCTCCGGCTT
TGGGTGGGCTTGCTTAGCCGTACAAGAGATCCAAAATGCCGGTCTTCAGA
GCCAATACAATTACCTTCTCAACCCTACACAGGTTCTTCTCAGCCTGACT
GTTGGGCCTGCTCTCATCTTCCTTCACGGGGGAAAGCAGCTCATCTACCC
CTCCTCCCTCTCTGCCTCCTCTCCCCTCTCCCCACTCACCAATCATCGAG
GCTCCTATTTTCTACTGGCCTTGACGTGGTTCTCCCTCGTTTTCGCTGCA
TTTGGCTTGCTAACCTTGGCACAGACTCGTCCTTCCTCCGTCATTGCAGT
TGCCCTTCTAGTCCTCCCCCTCCTCCACAGCACCCCGCACACGCACAACC
CCTCGTACACAGACGAAGACGAATATGAGGAGGAGGAGGAAGAGGGGGAC
GGAGACTCAACACCCTCCTCCCGGACCCGATCTTCTTCCAGCCTCATTTC
CACCGGCGTTATCTCCGCCCTCCTCACCGTCGGTCTTCCTTTGAGCTTGA
CAGAGGCAGGGCTGCTCCTCCGTTCCTCCCCCCCTACCTCTACCTCGGGA
CATTCGTGGATTTGGAAATTGGGGTTTTTGGGACTGTCTGTTGGACTGAG
CCAGATGTCAGTCACTACCTTTCGAGATGCCCAGGCACAGACGGAGGTAT
TGGGACAGGACGAGGAGGATGAGGAGGGGGGGATGGAGGAGGGGGAGATG
AGATTGAGTCGGGCAGGAAAACAAGTAAGGTTATTGGGAGCGTTGTCGAC
GCTGGCATTGTGTGTGGGGGGGATGGGGCCCGGGGTGGTGGTGGGCAGTT
TGGTCCATTTGCTGGTGTTATCAAAATTATCGACGGGAGAGAGGGTGTGG
GGGAGGGTGGGGAGGACGATGGCGGAGATGCAGGGAGGGGTATGGGCATT
GATGGCTTCATTGGTGGGGGAAGCGATGAGCTTGCCGGCTTTGGAAGGGG
AGGAGGAGGTAGGGATACGGACAGAGAGGCTTGGGGGGAAGACGGAGGAG
GATGAGAAAATGTATATGGAGGTGGAGGAGAAAGGCGTTGCCAATTTGGT
GGCGGCTTTGAAGAAACAGCAGCTACGGCAAGAGGCCACCAAGGTCAAGA
ATGAGTACGAGCGATTATCATCCCCTTTATTCGCCTCCTCTCCTGTCTCG
TCCTCCTCCACAGCGGTCAGCAGCAGCAGCAGCGGCAGCAGCCGCGGATC
ATCAGAGGCGGAAGACGAGGAGCGCTTGGGCTTGCCGTTGCCTCCTTCTT
GA
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Synonyms
Publications