NO06G03340.1, NO06G03340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03340.1
Unique NameNO06G03340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1607
Alignment locationchr6:924274..925976 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:924274..925976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03340.1 vs.
Match: EWM26335.1 (TIP41-like protein [Nannochloropsis gaditana])

HSP 1 Score: 395.2 bits (1014), Expect = 2.600e-106
Identity = 241/443 (54.40%), Postives = 292/443 (65.91%), Query Frame = 0 
Query:    1 MPGATVAEPAVLERYQARTTKYDDSTTLALDTWRITSRRRPILSDQEKEALSARIAAYWSAHGKTGASMIVGGGGVVGSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSKEHASTTSTSTTSGDDDFAAANPATMVNPEVLSGSGHNFTPLPEILFGRSYLEIKHAATAGGDEE---GGGSGAGPGQSTSSTIDFCLRFNTTGALISWARRHVDGAGGTPLRVVTVPEASRWAAGNLAVGLKQVRYDWVFGTDYEGELFSNVQGG----EMEGDPCDTCMD--DRESARVGVEWESADASVIDRELLSDRRQPILFYDDITLYEDELHDHGMVLLNAKIRVMPTCWFVLLRYFLRVDRVLIRVEDTRYFHRLGQEWVGKERSRKELTFAQLGKAGLPMETSEYRDVSKVAMMLECAGTPATVVHSRLVLSGAPS 435
            MPGATVAE AVL R  A   K +DST + L  W++ SR RPILSDQE+EAL+ RIA +WS H    ASM++                   +S  +S+ S   +   S++  S+ S   +E AS       SGD      +PA       LS +GHNF PLPEILFG+S+LE++H+   G  EE   G         +  +T DF LRFNTTGALISWA RHVD      + V+ VPEASRWAAG+L  GL+QVRYDWVFGTDYEGEL   V+GG    ++E DPCDT +D  +R+    G+EWE ADASVIDR LL  R QPILFYDD+TLYEDELHDHG+V LN K+RVMPTCWFVLLRYFLRVD VL+R+ DTRYFHR+G EW+GKE  RKE+TFAQL + GL   TSEYRDV+ V  M++  G PA V ++RLVL GAPS
Sbjct:    1 MPGATVAEEAVLRRNGASVEKSEDSTRIDLGGWQVCSRARPILSDQEREALTQRIAHFWSVHCTDAASMMM-------------------ASHDTSNYSEVGAGCPSTTGQSTRSGIGEEGAS------ASGD------HPAD------LSNAGHNFIPLPEILFGKSFLELRHSVIPGRSEEEVLGDSKEEMRSGALPATTDFWLRFNTTGALISWAERHVDTNEKGKVEVIRVPEASRWAAGHLGAGLRQVRYDWVFGTDYEGELLRRVRGGGQRDKVEADPCDTLLDVEERKERSAGLEWEVADASVIDRSLLQCRDQPILFYDDVTLYEDELHDHGVVSLNVKVRVMPTCWFVLLRYFLRVDGVLLRIRDTRYFHRMGHEWIGKESRRKEVTFAQLAEEGLSTRTSEYRDVNAVVGMIDSIGPPADVCYTRLVLHGAPS 406
The following BLAST results are available for this feature:
BLAST of NO06G03340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26335.12.600e-10654.40TIP41-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03340NO06G03340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03340.1NO06G03340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03340.1.cds1NO06G03340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03340.1.cds2NO06G03340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03340.1 ID=NO06G03340.1|Name=NO06G03340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1607bp
CTCTGTCTTAAAGTAGGAGGGAGGCATGGTTGTGTGAGAGGTTGCATCTG
GCCTTTAGAGAGAACATAACGCTGTTGAACACGTTGGAAAGGCTTCGTCG
TGGGATGGTGCAGTCTTGATCAGGACTCTCCTCACATACAAGCCACGTAC
ATACCCGTATTAAGCAGACAAACCCGCTTACCGAAGCTCTCTTCGAAGCC
ATGCCAGGTGCCACGGTTGCAGAACCTGCGGTCTTAGAGCGCTACCAAGC
CAGGACGACCAAGTACGATGACAGTACTACGCTAGCGCTGGACACCTGGC
GGATTACCTCCCGAAGACGCCCAATTTTGAGCGACCAAGAGAAGGAAGCC
CTGTCAGCACGCATTGCCGCCTACTGGAGCGCACACGGCAAGACGGGGGC
ATCCATGATCGTGGGAGGCGGCGGTGTCGTTGGTAGCAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGCAGCAGTAGTAGCAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAAAGAGCACGCCTCCACGACATCAACGTCGACGACGAGTGGTGATG
ACGACTTTGCTGCGGCAAACCCAGCTACCATGGTAAACCCCGAGGTGTTG
AGCGGGAGCGGACATAATTTTACGCCCTTGCCCGAAATCCTATTCGGCCG
GAGCTACCTAGAAATCAAACATGCCGCTACGGCTGGAGGGGATGAGGAAG
GGGGAGGAAGTGGGGCAGGGCCAGGACAATCAACGTCCTCAACGATAGAT
TTCTGCTTGCGTTTCAACACCACGGGCGCGCTCATCTCTTGGGCCCGACG
ACATGTGGATGGGGCGGGAGGGACACCGTTGAGGGTTGTAACGGTGCCTG
AGGCCAGTCGGTGGGCGGCGGGGAATCTGGCCGTGGGCTTAAAGCAGGTG
CGGTATGATTGGGTGTTTGGAACTGATTATGAAGGGGAGCTGTTTAGCAA
TGTACAGGGAGGGGAGATGGAGGGAGATCCATGTGATACGTGCATGGATG
ACCGGGAGAGTGCAAGGGTTGGCGTGGAGTGGGAGTCGGCGGATGCAAGT
GTGATAGACCGAGAGTTGCTGAGTGATCGGAGGCAGCCTATTTTGTTCTA
TGATGACATCACCTTGTATGAGGACGAGTTGCATGATCATGGCATGGTGT
TACTCAATGCCAAGATTCGGGTGATGCCCACATGTTGGTTTGTCTTGTTG
CGGTACTTCCTGAGGGTGGATAGAGTTTTGATCCGCGTGGAGGACACGAG
GTACTTCCATCGGCTCGGGCAAGAATGGGTGGGCAAGGAGCGGAGTCGGA
AGGAGCTGACATTTGCACAGTTGGGGAAAGCGGGTTTGCCGATGGAGACG
TCGGAATACCGGGATGTGAGCAAAGTGGCGATGATGTTGGAGTGCGCTGG
AACGCCTGCCACTGTGGTGCATTCGCGGTTGGTTTTGTCGGGGGCTCCGT
CCTGAGCGGCCAAGGGATGGACGGATGGAGGGGATAGGGGAAGAAGGGGG
TAGAGGAGGATGTATCAGAATGATTTATAAAGACCATGATGCGTGAAAAG
TGCCCTG
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protein sequence of NO06G03340.1

>NO06G03340.1-protein ID=NO06G03340.1-protein|Name=NO06G03340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MPGATVAEPAVLERYQARTTKYDDSTTLALDTWRITSRRRPILSDQEKEA
LSARIAAYWSAHGKTGASMIVGGGGVVGSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSKEHASTTSTSTTSGDDDFAAANPATMVNPEVL
SGSGHNFTPLPEILFGRSYLEIKHAATAGGDEEGGGSGAGPGQSTSSTID
FCLRFNTTGALISWARRHVDGAGGTPLRVVTVPEASRWAAGNLAVGLKQV
RYDWVFGTDYEGELFSNVQGGEMEGDPCDTCMDDRESARVGVEWESADAS
VIDRELLSDRRQPILFYDDITLYEDELHDHGMVLLNAKIRVMPTCWFVLL
RYFLRVDRVLIRVEDTRYFHRLGQEWVGKERSRKELTFAQLGKAGLPMET
SEYRDVSKVAMMLECAGTPATVVHSRLVLSGAPS*
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mRNA from alignment at chr6:924274..925976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03340.1 ID=NO06G03340.1|Name=NO06G03340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1703bp|location=Sequence derived from alignment at chr6:924274..925976- (Nannochloropsis oceanica)
CTCTGTCTTAAAGTAGGAGGGAGGCATGGTTGTGTGAGAGGTTGCATCTG
GCCTTTAGAGAGAACATAACGCTGTTGAACACGTTGGAAAGGCTTCGTCG
TGGGATGGTGCAGTCTTGATCAGGACTCTCCTCACATACAAGCCACGTAC
ATACCCGTATTAAGCAGACAAACCCGCTTACCGAAGCTCTCTTCGAAGCC
ATGCCAGGTGCCACGGTTGCAGAACCTGCGGTCTTAGAGGTGCGTAATCT
CCATCACCCTTCTTCCACGCATCGCATCTCACCATTCTCCCTTCCTTCGT
CGGTCAATCTCTTCCTCCCTGCAATAAAATCACAGCGCTACCAAGCCAGG
ACGACCAAGTACGATGACAGTACTACGCTAGCGCTGGACACCTGGCGGAT
TACCTCCCGAAGACGCCCAATTTTGAGCGACCAAGAGAAGGAAGCCCTGT
CAGCACGCATTGCCGCCTACTGGAGCGCACACGGCAAGACGGGGGCATCC
ATGATCGTGGGAGGCGGCGGTGTCGTTGGTAGCAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGCA
GCAGTAGTAGCAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AAAGAGCACGCCTCCACGACATCAACGTCGACGACGAGTGGTGATGACGA
CTTTGCTGCGGCAAACCCAGCTACCATGGTAAACCCCGAGGTGTTGAGCG
GGAGCGGACATAATTTTACGCCCTTGCCCGAAATCCTATTCGGCCGGAGC
TACCTAGAAATCAAACATGCCGCTACGGCTGGAGGGGATGAGGAAGGGGG
AGGAAGTGGGGCAGGGCCAGGACAATCAACGTCCTCAACGATAGATTTCT
GCTTGCGTTTCAACACCACGGGCGCGCTCATCTCTTGGGCCCGACGACAT
GTGGATGGGGCGGGAGGGACACCGTTGAGGGTTGTAACGGTGCCTGAGGC
CAGTCGGTGGGCGGCGGGGAATCTGGCCGTGGGCTTAAAGCAGGTGCGGT
ATGATTGGGTGTTTGGAACTGATTATGAAGGGGAGCTGTTTAGCAATGTA
CAGGGAGGGGAGATGGAGGGAGATCCATGTGATACGTGCATGGATGACCG
GGAGAGTGCAAGGGTTGGCGTGGAGTGGGAGTCGGCGGATGCAAGTGTGA
TAGACCGAGAGTTGCTGAGTGATCGGAGGCAGCCTATTTTGTTCTATGAT
GACATCACCTTGTATGAGGACGAGTTGCATGATCATGGCATGGTGTTACT
CAATGCCAAGATTCGGGTGATGCCCACATGTTGGTTTGTCTTGTTGCGGT
ACTTCCTGAGGGTGGATAGAGTTTTGATCCGCGTGGAGGACACGAGGTAC
TTCCATCGGCTCGGGCAAGAATGGGTGGGCAAGGAGCGGAGTCGGAAGGA
GCTGACATTTGCACAGTTGGGGAAAGCGGGTTTGCCGATGGAGACGTCGG
AATACCGGGATGTGAGCAAAGTGGCGATGATGTTGGAGTGCGCTGGAACG
CCTGCCACTGTGGTGCATTCGCGGTTGGTTTTGTCGGGGGCTCCGTCCTG
AGCGGCCAAGGGATGGACGGATGGAGGGGATAGGGGAAGAAGGGGGTAGA
GGAGGATGTATCAGAATGATTTATAAAGACCATGATGCGTGAAAAGTGCC
CTG
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Coding sequence (CDS) from alignment at chr6:924274..925976-

>NO06G03340.1 ID=NO06G03340.1|Name=NO06G03340.1|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr6:924274..925976- (Nannochloropsis oceanica)
ATGCCAGGTGCCACGGTTGCAGAACCTGCGGTCTTAGAGCGCTACCAAGC
CAGGACGACCAAGTACGATGACAGTACTACGCTAGCGCTGGACACCTGGC
GGATTACCTCCCGAAGACGCCCAATTTTGAGCGACCAAGAGAAGGAAGCC
CTGTCAGCACGCATTGCCGCCTACTGGAGCGCACACGGCAAGACGGGGGC
ATCCATGATCGTGGGAGGCGGCGGTGTCGTTGGTAGCAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGCAGCAGTAGTAGCAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAAAGAGCACGCCTCCACGACATCAACGTCGACGACGAGTGGTGATG
ACGACTTTGCTGCGGCAAACCCAGCTACCATGGTAAACCCCGAGGTGTTG
AGCGGGAGCGGACATAATTTTACGCCCTTGCCCGAAATCCTATTCGGCCG
GAGCTACCTAGAAATCAAACATGCCGCTACGGCTGGAGGGGATGAGGAAG
GGGGAGGAAGTGGGGCAGGGCCAGGACAATCAACGTCCTCAACGATAGAT
TTCTGCTTGCGTTTCAACACCACGGGCGCGCTCATCTCTTGGGCCCGACG
ACATGTGGATGGGGCGGGAGGGACACCGTTGAGGGTTGTAACGGTGCCTG
AGGCCAGTCGGTGGGCGGCGGGGAATCTGGCCGTGGGCTTAAAGCAGGTG
CGGTATGATTGGGTGTTTGGAACTGATTATGAAGGGGAGCTGTTTAGCAA
TGTACAGGGAGGGGAGATGGAGGGAGATCCATGTGATACGTGCATGGATG
ACCGGGAGAGTGCAAGGGTTGGCGTGGAGTGGGAGTCGGCGGATGCAAGT
GTGATAGACCGAGAGTTGCTGAGTGATCGGAGGCAGCCTATTTTGTTCTA
TGATGACATCACCTTGTATGAGGACGAGTTGCATGATCATGGCATGGTGT
TACTCAATGCCAAGATTCGGGTGATGCCCACATGTTGGTTTGTCTTGTTG
CGGTACTTCCTGAGGGTGGATAGAGTTTTGATCCGCGTGGAGGACACGAG
GTACTTCCATCGGCTCGGGCAAGAATGGGTGGGCAAGGAGCGGAGTCGGA
AGGAGCTGACATTTGCACAGTTGGGGAAAGCGGGTTTGCCGATGGAGACG
TCGGAATACCGGGATGTGAGCAAAGTGGCGATGATGTTGGAGTGCGCTGG
AACGCCTGCCACTGTGGTGCATTCGCGGTTGGTTTTGTCGGGGGCTCCGT
CCTGA
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Synonyms
Publications