NO06G03330.1, NO06G03330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03330.1
Unique NameNO06G03330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1608
Alignment locationchr6:922158..923960 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:922158..923960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03330.1 vs.
Match: XP_005852798.1 (protein phosphatase 2c, partial [Nannochloropsis gaditana CCMP526]; EKU23035.1 protein phosphatase 2c, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 628.6 bits (1620), Expect = 1.700e-176
Identity = 343/483 (71.01%), Postives = 385/483 (79.71%), Query Frame = 0 
Query:   53 SSSSSSSSSSSSSSSFSSSSSSSSPPPPRLPLSSFSPSLATTSSLSSSKGHNQNHKNNPFFNSLPLAAAAATLLALTTVAITQQDAGTFYFRPPTRPHRVMYSLSTYPGNEYIEDRHEIREIMGGDVFCGVFDGHGGWQVAEYASVHLSKNLEIELSNMGHRSEPEEVSKALIRAFERTDRGVIHKVHHAFEIGLGNVAKVGACALTLLIKNQHVFVANAGDCRAVLGKRQLPATVGGARRTTKGATTAKAAVTATATAAAAAGQYVAVALSQDHNAKLPKEALALQQAHPGEPDIVKCKHANACYVKGRLQPTRALGDAYLKYSEFNGRPNRSDSSAGRYIPPPYTPPYITATPEVQVFEGVLDDPTAEFIIVATDGVWDLLTNEEAVRFVGQTIAKGDGMHVSQQLIAHALEARAKDLGMTVEDLRVLPPGKARRSKHDDMTALVIMLQGSAAGVAPESAAANPQDGKVDTSIDPTVPPGE 536
            S++S   ++    +  S  SSSSS P   L LSS        S       H+  + N+    ++ LA A A +L LT +  ++QDAGTF  RPP RP RV YSLSTY GNE+IEDRHEIREI+GGD+FCGVFDGHGGWQVAEYASVHLSKNLEIEL+NMGHR+E E+V KAL+RAFERTDRGVIHKVHHAFEIGLG+VAKVGACAL +LIK  H++VANAGDCRAV+GKR  P T   A     G    K A   + T     G Y AVALS+DHNAKLPKEA AL QAHPGEPDIVKCKHANACYVKGRLQPTRALGDAYLKYSEFNGRPNRSDSSAGRYI PPYTPPYITATPEV+V+E +LDDP+AEF+I+A+DGVWDL +NEEAVRFVG+ IA GD MHVSQ+LIAHAL+ RAKDLGMTVE+LR LPPGK+RRSKHDDMTALVIMLQG AAGV PE AAANPQDGKVDTSIDPT+PP E
Sbjct:  399 STTSIRLAAPQQRALCSPPSSSSSVPHTALSLSS--------SIYDHHGPHSSTNGNSS--TAISLAGAVAAILTLTALTPSRQDAGTFDARPPARPQRVKYSLSTYSGNEFIEDRHEIREIVGGDIFCGVFDGHGGWQVAEYASVHLSKNLEIELANMGHRTESEQVIKALVRAFERTDRGVIHKVHHAFEIGLGHVAKVGACALAVLIKGHHLYVANAGDCRAVIGKRSPPPTEKAA-----GGKRGKKASPVSGTGRG--GDYHAVALSEDHNAKLPKEASALAQAHPGEPDIVKCKHANACYVKGRLQPTRALGDAYLKYSEFNGRPNRSDSSAGRYIAPPYTPPYITATPEVRVYEDILDDPSAEFVILASDGVWDLCSNEEAVRFVGRAIADGDSMHVSQRLIAHALQCRAKDLGMTVEELRALPPGKSRRSKHDDMTALVIMLQGGAAGVEPECAAANPQDGKVDTSIDPTIPPEE 864
The following BLAST results are available for this feature:
BLAST of NO06G03330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852798.11.700e-17671.01protein phosphatase 2c, partial [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03330NO06G03330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03330.1NO06G03330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03330.1.cds1NO06G03330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03330.1.cds2NO06G03330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03330.1 ID=NO06G03330.1|Name=NO06G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1608bp
ATGCTGCGGACGGCTTCGGCCATCTTGCTACGATATGGCAGTATGACATG
CCAGAGTGTAAGTCGGTCTTCATCCATGGTCCGCCCCGCCGGTGTGCATA
GCCTTTTGCCCGCCTTGTCAGCAGTATCATCATCCGCACAGCGCGCATTG
TCCCTCTCCTCCTCCTCCTCATCATCATCATCATCATCTTCTTCTTCTTC
TTTTTCTTCTTCATCATCTTCTTCTTCTCCTCCTCCTCCTCGTCTTCCTT
TATCCTCCTTCTCTCCTTCCCTTGCCACCACTTCCTCATTATCATCGTCG
AAAGGTCACAATCAAAATCATAAAAATAACCCGTTCTTCAACTCCCTTCC
GCTTGCCGCGGCAGCTGCTACTCTTTTGGCCCTCACTACTGTTGCAATCA
CCCAACAAGATGCCGGTACATTCTATTTCCGGCCCCCCACCCGCCCACAT
CGCGTGATGTACTCCCTGTCGACCTACCCGGGGAACGAATACATTGAGGA
TCGACATGAGATTAGGGAGATTATGGGAGGAGATGTTTTTTGTGGAGTCT
TTGATGGTCATGGTGGGTGGCAAGTGGCCGAGTACGCCTCAGTACATTTG
AGCAAGAATCTGGAGATAGAACTAAGTAATATGGGGCATCGGTCAGAGCC
GGAAGAGGTGAGTAAAGCATTAATCCGAGCGTTTGAGCGGACTGACCGGG
GAGTGATCCACAAGGTGCACCACGCTTTTGAAATCGGCTTGGGGAACGTG
GCCAAAGTGGGGGCTTGTGCTCTCACACTCCTGATTAAGAACCAGCATGT
CTTTGTGGCCAACGCGGGGGACTGCAGGGCGGTCTTGGGGAAGCGACAGT
TGCCGGCTACTGTCGGTGGGGCCCGAAGAACAACTAAAGGAGCAACAACT
GCAAAAGCAGCAGTAACAGCAACGGCAACAGCAGCAGCGGCAGCAGGACA
ATATGTAGCTGTGGCGTTGAGCCAAGACCACAATGCCAAGCTCCCCAAGG
AGGCATTGGCCCTCCAGCAAGCCCACCCAGGCGAGCCCGACATTGTCAAG
TGCAAGCATGCCAACGCCTGCTACGTCAAAGGTCGTTTGCAACCCACCCG
AGCCCTCGGTGACGCCTACCTCAAGTACTCCGAGTTCAACGGTCGTCCCA
ATCGTTCCGACTCCAGCGCTGGCCGGTATATTCCCCCTCCGTACACCCCT
CCCTACATCACGGCTACCCCGGAAGTGCAGGTGTTTGAAGGGGTTCTGGA
CGACCCAACGGCGGAATTTATTATCGTTGCCACAGATGGTGTGTGGGATT
TGTTGACCAATGAAGAGGCTGTGCGCTTTGTGGGACAGACGATTGCGAAG
GGTGATGGCATGCATGTGAGCCAGCAGTTGATTGCGCATGCCTTGGAGGC
ACGGGCGAAGGATCTGGGGATGACGGTAGAGGACCTTCGGGTCCTGCCTC
CAGGGAAGGCTCGGCGATCCAAGCACGATGATATGACAGCGCTGGTGATT
ATGCTGCAAGGCTCAGCCGCGGGTGTAGCGCCAGAGAGCGCAGCGGCAAA
CCCGCAGGATGGCAAGGTTGATACGAGCATTGATCCGACTGTACCGCCAG
GAGAGTGA
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protein sequence of NO06G03330.1

>NO06G03330.1-protein ID=NO06G03330.1-protein|Name=NO06G03330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=536bp
MLRTASAILLRYGSMTCQSVSRSSSMVRPAGVHSLLPALSAVSSSAQRAL
SLSSSSSSSSSSSSSSSFSSSSSSSSPPPPRLPLSSFSPSLATTSSLSSS
KGHNQNHKNNPFFNSLPLAAAAATLLALTTVAITQQDAGTFYFRPPTRPH
RVMYSLSTYPGNEYIEDRHEIREIMGGDVFCGVFDGHGGWQVAEYASVHL
SKNLEIELSNMGHRSEPEEVSKALIRAFERTDRGVIHKVHHAFEIGLGNV
AKVGACALTLLIKNQHVFVANAGDCRAVLGKRQLPATVGGARRTTKGATT
AKAAVTATATAAAAAGQYVAVALSQDHNAKLPKEALALQQAHPGEPDIVK
CKHANACYVKGRLQPTRALGDAYLKYSEFNGRPNRSDSSAGRYIPPPYTP
PYITATPEVQVFEGVLDDPTAEFIIVATDGVWDLLTNEEAVRFVGQTIAK
GDGMHVSQQLIAHALEARAKDLGMTVEDLRVLPPGKARRSKHDDMTALVI
MLQGSAAGVAPESAAANPQDGKVDTSIDPTVPPGE*
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mRNA from alignment at chr6:922158..923960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03330.1 ID=NO06G03330.1|Name=NO06G03330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1803bp|location=Sequence derived from alignment at chr6:922158..923960- (Nannochloropsis oceanica)
ATGCTGCGGACGGCTTCGGCCATCTTGCTACGATATGGCAGTATGACATG
CCAGAGTGTAAGTCGGTCTTCATCCATGGTCCGCCCCGCCGGTGTGCATA
GCCTTTTGCCCGCCTTGTCAGCAGTATCATCATCCGCACAGGTTAGTTTC
CCCTCCCCCTCCCACATGTCTGTCTTTCTCTCCGTGCTTACCCTGATAGT
ATATTAACATTCTTTTTACTAGTGCTGCTGATATTGTTCCATCTGTCGAG
GTATTTATCATATTGTCAGCATCATCTAAACCACTCACGTCACGATCTTC
CACTTTCCCAATTCACCCACTCCCTCTCCACTGCAGCGCGCATTGTCCCT
CTCCTCCTCCTCCTCATCATCATCATCATCATCTTCTTCTTCTTCTTTTT
CTTCTTCATCATCTTCTTCTTCTCCTCCTCCTCCTCGTCTTCCTTTATCC
TCCTTCTCTCCTTCCCTTGCCACCACTTCCTCATTATCATCGTCGAAAGG
TCACAATCAAAATCATAAAAATAACCCGTTCTTCAACTCCCTTCCGCTTG
CCGCGGCAGCTGCTACTCTTTTGGCCCTCACTACTGTTGCAATCACCCAA
CAAGATGCCGGTACATTCTATTTCCGGCCCCCCACCCGCCCACATCGCGT
GATGTACTCCCTGTCGACCTACCCGGGGAACGAATACATTGAGGATCGAC
ATGAGATTAGGGAGATTATGGGAGGAGATGTTTTTTGTGGAGTCTTTGAT
GGTCATGGTGGGTGGCAAGTGGCCGAGTACGCCTCAGTACATTTGAGCAA
GAATCTGGAGATAGAACTAAGTAATATGGGGCATCGGTCAGAGCCGGAAG
AGGTGAGTAAAGCATTAATCCGAGCGTTTGAGCGGACTGACCGGGGAGTG
ATCCACAAGGTGCACCACGCTTTTGAAATCGGCTTGGGGAACGTGGCCAA
AGTGGGGGCTTGTGCTCTCACACTCCTGATTAAGAACCAGCATGTCTTTG
TGGCCAACGCGGGGGACTGCAGGGCGGTCTTGGGGAAGCGACAGTTGCCG
GCTACTGTCGGTGGGGCCCGAAGAACAACTAAAGGAGCAACAACTGCAAA
AGCAGCAGTAACAGCAACGGCAACAGCAGCAGCGGCAGCAGGACAATATG
TAGCTGTGGCGTTGAGCCAAGACCACAATGCCAAGCTCCCCAAGGAGGCA
TTGGCCCTCCAGCAAGCCCACCCAGGCGAGCCCGACATTGTCAAGTGCAA
GCATGCCAACGCCTGCTACGTCAAAGGTCGTTTGCAACCCACCCGAGCCC
TCGGTGACGCCTACCTCAAGTACTCCGAGTTCAACGGTCGTCCCAATCGT
TCCGACTCCAGCGCTGGCCGGTATATTCCCCCTCCGTACACCCCTCCCTA
CATCACGGCTACCCCGGAAGTGCAGGTGTTTGAAGGGGTTCTGGACGACC
CAACGGCGGAATTTATTATCGTTGCCACAGATGGTGTGTGGGATTTGTTG
ACCAATGAAGAGGCTGTGCGCTTTGTGGGACAGACGATTGCGAAGGGTGA
TGGCATGCATGTGAGCCAGCAGTTGATTGCGCATGCCTTGGAGGCACGGG
CGAAGGATCTGGGGATGACGGTAGAGGACCTTCGGGTCCTGCCTCCAGGG
AAGGCTCGGCGATCCAAGCACGATGATATGACAGCGCTGGTGATTATGCT
GCAAGGCTCAGCCGCGGGTGTAGCGCCAGAGAGCGCAGCGGCAAACCCGC
AGGATGGCAAGGTTGATACGAGCATTGATCCGACTGTACCGCCAGGAGAG
TGA
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Coding sequence (CDS) from alignment at chr6:922158..923960-

>NO06G03330.1 ID=NO06G03330.1|Name=NO06G03330.1|organism=Nannochloropsis oceanica|type=CDS|length=1608bp|location=Sequence derived from alignment at chr6:922158..923960- (Nannochloropsis oceanica)
ATGCTGCGGACGGCTTCGGCCATCTTGCTACGATATGGCAGTATGACATG
CCAGAGTGTAAGTCGGTCTTCATCCATGGTCCGCCCCGCCGGTGTGCATA
GCCTTTTGCCCGCCTTGTCAGCAGTATCATCATCCGCACAGCGCGCATTG
TCCCTCTCCTCCTCCTCCTCATCATCATCATCATCATCTTCTTCTTCTTC
TTTTTCTTCTTCATCATCTTCTTCTTCTCCTCCTCCTCCTCGTCTTCCTT
TATCCTCCTTCTCTCCTTCCCTTGCCACCACTTCCTCATTATCATCGTCG
AAAGGTCACAATCAAAATCATAAAAATAACCCGTTCTTCAACTCCCTTCC
GCTTGCCGCGGCAGCTGCTACTCTTTTGGCCCTCACTACTGTTGCAATCA
CCCAACAAGATGCCGGTACATTCTATTTCCGGCCCCCCACCCGCCCACAT
CGCGTGATGTACTCCCTGTCGACCTACCCGGGGAACGAATACATTGAGGA
TCGACATGAGATTAGGGAGATTATGGGAGGAGATGTTTTTTGTGGAGTCT
TTGATGGTCATGGTGGGTGGCAAGTGGCCGAGTACGCCTCAGTACATTTG
AGCAAGAATCTGGAGATAGAACTAAGTAATATGGGGCATCGGTCAGAGCC
GGAAGAGGTGAGTAAAGCATTAATCCGAGCGTTTGAGCGGACTGACCGGG
GAGTGATCCACAAGGTGCACCACGCTTTTGAAATCGGCTTGGGGAACGTG
GCCAAAGTGGGGGCTTGTGCTCTCACACTCCTGATTAAGAACCAGCATGT
CTTTGTGGCCAACGCGGGGGACTGCAGGGCGGTCTTGGGGAAGCGACAGT
TGCCGGCTACTGTCGGTGGGGCCCGAAGAACAACTAAAGGAGCAACAACT
GCAAAAGCAGCAGTAACAGCAACGGCAACAGCAGCAGCGGCAGCAGGACA
ATATGTAGCTGTGGCGTTGAGCCAAGACCACAATGCCAAGCTCCCCAAGG
AGGCATTGGCCCTCCAGCAAGCCCACCCAGGCGAGCCCGACATTGTCAAG
TGCAAGCATGCCAACGCCTGCTACGTCAAAGGTCGTTTGCAACCCACCCG
AGCCCTCGGTGACGCCTACCTCAAGTACTCCGAGTTCAACGGTCGTCCCA
ATCGTTCCGACTCCAGCGCTGGCCGGTATATTCCCCCTCCGTACACCCCT
CCCTACATCACGGCTACCCCGGAAGTGCAGGTGTTTGAAGGGGTTCTGGA
CGACCCAACGGCGGAATTTATTATCGTTGCCACAGATGGTGTGTGGGATT
TGTTGACCAATGAAGAGGCTGTGCGCTTTGTGGGACAGACGATTGCGAAG
GGTGATGGCATGCATGTGAGCCAGCAGTTGATTGCGCATGCCTTGGAGGC
ACGGGCGAAGGATCTGGGGATGACGGTAGAGGACCTTCGGGTCCTGCCTC
CAGGGAAGGCTCGGCGATCCAAGCACGATGATATGACAGCGCTGGTGATT
ATGCTGCAAGGCTCAGCCGCGGGTGTAGCGCCAGAGAGCGCAGCGGCAAA
CCCGCAGGATGGCAAGGTTGATACGAGCATTGATCCGACTGTACCGCCAG
GAGAGTGA
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Synonyms
Publications