NO06G03300.1, NO06G03300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03300.1
Unique NameNO06G03300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length437
Alignment locationchr6:917072..917787 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:917072..917787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03300.1 vs.
Match: XP_005854345.1 (hypothetical protein NGA_0191000, partial [Nannochloropsis gaditana CCMP526]; EKU22011.1 hypothetical protein NGA_0191000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 104.8 bits (260), Expect = 1.100e-19
Identity = 54/66 (81.82%), Postives = 61/66 (92.42%), Query Frame = 0 
Query:    1 MRSFLQIVVRVVPACMLVGAGMELFMLNTGFYDVALRKEAERRIEQVKEREALSRQMEDTKRKQLE 67
            MR FL+IVVR+VPACM+VGA MELFMLNTGFYDVALRKEAERR+EQ +ERE LSR+ME TKR+QLE
Sbjct:   36 MRPFLEIVVRLVPACMVVGASMELFMLNTGFYDVALRKEAERRVEQAREREELSRKMESTKRRQLE 101
The following BLAST results are available for this feature:
BLAST of NO06G03300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854345.11.100e-1981.82hypothetical protein NGA_0191000, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03300NO06G03300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03300.1NO06G03300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03300.1.cds1NO06G03300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03300.1.cds2NO06G03300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03300.1 ID=NO06G03300.1|Name=NO06G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=437bp
CAATCGCACAGCAGGCGCACGCTGTCTCCGAACTTGCCCCTAGACCACAG
GTTTTCCTCTAGAGCACGCACCGAGTCTTGTCTTCCTCTTGAAAGACACT
CTTCCGCAACTCGACCTCCCCACTCCGCCCGCGATGCGCTCATTCCTCCA
AATCGTGGTCAGGGTCGTCCCTGCCTGCATGCTGGTGGGCGCAGGCATGG
AACTTTTCATGCTTAATACTGGTTTCTACGACGTGGCCTTGCGGAAGGAA
GCCGAGAGACGCATCGAGCAAGTCAAGGAACGGGAGGCATTAAGCCGTCA
AATGGAAGACACCAAACGAAAGCAATTGGAGTGAGGTCTGGGCGCGTTAA
AGACAATGTATGCACGTCCACAAGCATAGAAGCCATGGGGTAGCTGTGTA
TGTAAAAAACCAAAGTGGAACATGTACATAATACAAG
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protein sequence of NO06G03300.1

>NO06G03300.1-protein ID=NO06G03300.1-protein|Name=NO06G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=67bp
MRSFLQIVVRVVPACMLVGAGMELFMLNTGFYDVALRKEAERRIEQVKER
EALSRQMEDTKRKQLE*
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mRNA from alignment at chr6:917072..917787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03300.1 ID=NO06G03300.1|Name=NO06G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=716bp|location=Sequence derived from alignment at chr6:917072..917787- (Nannochloropsis oceanica)
CAATCGCACAGCAGGCGCACGCTGTCTCCGAACTTGCCCCTAGACCACAG
GTTTTCCTCTAGAGCACGCACCGAGTCTTGTCTTCCTCTTGAAAGACACT
CTTCCGCAACTCGACCTCCCCACTCCGCCCGCGATGCGCTCATTCCTCCA
AATCGTGGTCAGGGTCGTCCCTGCCTGCATGCTGGTGGGCGCAGGCATGG
AACTTTTCATGCTTAATACTGGTTTCTGTAAGTGCTGCAGAGTGTGTCGG
GTCTTGAACTTTTTTGAGTTTGGTGTTCTGCTTTTGCCTTCCCACCCGTG
CGACCCCCCTGACGTGGTTTGCATTTATATATACATGCAAACCACGATGC
AGCATAACACCACCTCCTCTTTCTTCTCCAGTACTGTAAGCTGTGTCTTC
ACACATCCTGTGTCTATCCCATGCTTTCTTCCAGTCAATCTCTCCTCCCT
TGCCTCACTTACCAGTTCCCTTTAACTTCCACCTCTCTCTTCCCTTTCCC
CGTCAGACGACGTGGCCTTGCGGAAGGAAGCCGAGAGACGCATCGAGCAA
GTCAAGGAACGGGAGGCATTAAGCCGTCAAATGGAAGACACCAAACGAAA
GCAATTGGAGTGAGGTCTGGGCGCGTTAAAGACAATGTATGCACGTCCAC
AAGCATAGAAGCCATGGGGTAGCTGTGTATGTAAAAAACCAAAGTGGAAC
ATGTACATAATACAAG
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Coding sequence (CDS) from alignment at chr6:917072..917787-

>NO06G03300.1 ID=NO06G03300.1|Name=NO06G03300.1|organism=Nannochloropsis oceanica|type=CDS|length=201bp|location=Sequence derived from alignment at chr6:917072..917787- (Nannochloropsis oceanica)
ATGCGCTCATTCCTCCAAATCGTGGTCAGGGTCGTCCCTGCCTGCATGCT
GGTGGGCGCAGGCATGGAACTTTTCATGCTTAATACTGGTTTCTACGACG
TGGCCTTGCGGAAGGAAGCCGAGAGACGCATCGAGCAAGTCAAGGAACGG
GAGGCATTAAGCCGTCAAATGGAAGACACCAAACGAAAGCAATTGGAGTG
A
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Synonyms
Publications