NO06G02990.1, NO06G02990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02990.1
Unique NameNO06G02990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1373
Alignment locationchr6:853901..855273 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:853901..855273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02990.1 vs.
Match: PFH37749.1 (hypothetical protein BESB_000910 [Besnoitia besnoiti])

HSP 1 Score: 69.3 bits (168), Expect = 2.500e-8
Identity = 47/134 (35.07%), Postives = 71/134 (52.99%), Query Frame = 0 
Query:  186 LATFTMVASVLCAIDCTVFPVLLTVLPAAEWLGGVD-----LHALSTNVALYLVLPIGSTTTLANWLMHRNLTLAAMSVGGLSLILMS---NYAGLTETLGWM-QDSRMYNTVGCGLLLGSSWLAHH--HEKDS 309
            L+ ++  A+VLCAIDCTV P L  +LP    LG  +     LH  S   ALY+VLP+G    + N+L HR   L    + GL+++ ++   +   L   L W+  D  +   VG  LL+ +++L+H   H  DS
Sbjct:   16 LSDWSSFAAVLCAIDCTVLPALAALLPVVGLLGDSEGAHDHLHFYSHLAALYVVLPLGFVALVLNYLQHRRTALLVSGLVGLAIVFVTHCHDSIPLPHWLHWIAHDHALIGAVGSALLISTNYLSHKAIHGMDS 149
The following BLAST results are available for this feature:
BLAST of NO06G02990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
PFH37749.12.500e-835.07hypothetical protein BESB_000910 [Besnoitia besnoi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02990NO06G02990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02990.1NO06G02990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02990.1.cds1NO06G02990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02990.1 ID=NO06G02990.1|Name=NO06G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp
CCGCGCTCTACACGTCACAATCACGAGAAGAACCATGCTGCCCGCATCTT
CCCGGGCCGGTCTGAGACTTTCTGGGACACGGACAGGTAGACACAGCACC
AGGACAGTGATGACGTGCCTGTCCCTGCAAACACAGCTCGCGCTGGGGCT
GCACCACCACGCCATCCACCGCAATAAGTACAACCAGCCCTTCCATGCCC
TTCAAACCTTCGGCAGATTTAGTGATATAGAACGAGTGGGAAGACAGTTG
GGTTCGGTGGGAGCTTTGCGCATTGGGTTTTTACGCACCAGCGGCGGCAG
AAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAACGGCGGCAGTAGCAGCAGTAGCAGT
ATGACTTCCAACACCGGCACCGAATCAACATTGTCAAAATTAGATTCCCC
CGCGTACCACAAAAGTAAGGAGGAAGAAGCTCCGGTCACCTCTACCAAGG
CAGCAGCCGCACCAACCTTACCTCAGCACCACACTGAAGCAGACGACAAC
GGTAGCGGCGGTGGCATCGAGGGTCGCAATCGTGAGCTCCTTGCCACGTT
CACGATGGTTGCTAGCGTGCTGTGTGCGATCGACTGCACTGTCTTCCCCG
TCCTTCTTACCGTGCTCCCTGCCGCTGAATGGTTGGGAGGGGTAGATTTA
CATGCCCTTTCAACCAACGTGGCTTTGTATTTGGTCTTGCCGATAGGGAG
TACTACCACGCTGGCTAATTGGTTAATGCACCGCAACCTGACCTTGGCAG
CCATGAGTGTGGGGGGTCTGTCGTTGATTTTAATGAGTAATTATGCGGGT
TTGACGGAGACTCTTGGATGGATGCAGGATTCACGGATGTATAATACGGT
GGGATGCGGGTTGTTGCTCGGCTCGTCGTGGTTGGCACATCACCATGAGA
AGGATAGTGGTCATCATGGTGGTGAGAAAGGAGGAACAGGGAAAGGAAAG
AAGCGTTGCAACTAGAATGATGCAGGGCGGAAGAGTGTGTAAGTCTTTTG
GTGGGCCTGAGGATGGGCTCATCATTTCAAAGGAGGATGAGGTGGAAGAG
GAGGGGGGGGGAGGAGGAGGAGGAGGAGAAGGAGGATGAGGTTTTGTCAA
TAAATTGTGAGTGAGAGGAAAAGATTGTGTAGATAGATGTCTATGGTGGG
TCTTGGAGCAATTATGACGGCAAATTGATCGGCAAAAAGCCCTGAAAAGC
AGCAAGGTCATATATTATCATCATATGTCATAAAGGAGGTAGAGGGGAGC
ATGAAAAGCAGGAGTAAGAGATGTGAAGATGGACTTAAGTTGTTGGCACA
TATGTATACGTAGGATGTATATA
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protein sequence of NO06G02990.1

>NO06G02990.1-protein ID=NO06G02990.1-protein|Name=NO06G02990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MLPASSRAGLRLSGTRTGRHSTRTVMTCLSLQTQLALGLHHHAIHRNKYN
QPFHALQTFGRFSDIERVGRQLGSVGALRIGFLRTSGGRSSSSGSSSSSS
SSNNSSSSSSSSSNGGSSSSSSMTSNTGTESTLSKLDSPAYHKSKEEEAP
VTSTKAAAAPTLPQHHTEADDNGSGGGIEGRNRELLATFTMVASVLCAID
CTVFPVLLTVLPAAEWLGGVDLHALSTNVALYLVLPIGSTTTLANWLMHR
NLTLAAMSVGGLSLILMSNYAGLTETLGWMQDSRMYNTVGCGLLLGSSWL
AHHHEKDSGHHGGEKGGTGKGKKRCN*
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mRNA from alignment at chr6:853901..855273+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02990.1 ID=NO06G02990.1|Name=NO06G02990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp|location=Sequence derived from alignment at chr6:853901..855273+ (Nannochloropsis oceanica)
CCGCGCTCTACACGTCACAATCACGAGAAGAACCATGCTGCCCGCATCTT
CCCGGGCCGGTCTGAGACTTTCTGGGACACGGACAGGTAGACACAGCACC
AGGACAGTGATGACGTGCCTGTCCCTGCAAACACAGCTCGCGCTGGGGCT
GCACCACCACGCCATCCACCGCAATAAGTACAACCAGCCCTTCCATGCCC
TTCAAACCTTCGGCAGATTTAGTGATATAGAACGAGTGGGAAGACAGTTG
GGTTCGGTGGGAGCTTTGCGCATTGGGTTTTTACGCACCAGCGGCGGCAG
AAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCA
GCAGCAGCAGCAGCAGCAGCAGCAACGGCGGCAGTAGCAGCAGTAGCAGT
ATGACTTCCAACACCGGCACCGAATCAACATTGTCAAAATTAGATTCCCC
CGCGTACCACAAAAGTAAGGAGGAAGAAGCTCCGGTCACCTCTACCAAGG
CAGCAGCCGCACCAACCTTACCTCAGCACCACACTGAAGCAGACGACAAC
GGTAGCGGCGGTGGCATCGAGGGTCGCAATCGTGAGCTCCTTGCCACGTT
CACGATGGTTGCTAGCGTGCTGTGTGCGATCGACTGCACTGTCTTCCCCG
TCCTTCTTACCGTGCTCCCTGCCGCTGAATGGTTGGGAGGGGTAGATTTA
CATGCCCTTTCAACCAACGTGGCTTTGTATTTGGTCTTGCCGATAGGGAG
TACTACCACGCTGGCTAATTGGTTAATGCACCGCAACCTGACCTTGGCAG
CCATGAGTGTGGGGGGTCTGTCGTTGATTTTAATGAGTAATTATGCGGGT
TTGACGGAGACTCTTGGATGGATGCAGGATTCACGGATGTATAATACGGT
GGGATGCGGGTTGTTGCTCGGCTCGTCGTGGTTGGCACATCACCATGAGA
AGGATAGTGGTCATCATGGTGGTGAGAAAGGAGGAACAGGGAAAGGAAAG
AAGCGTTGCAACTAGAATGATGCAGGGCGGAAGAGTGTGTAAGTCTTTTG
GTGGGCCTGAGGATGGGCTCATCATTTCAAAGGAGGATGAGGTGGAAGAG
GAGGGGGGGGGAGGAGGAGGAGGAGGAGAAGGAGGATGAGGTTTTGTCAA
TAAATTGTGAGTGAGAGGAAAAGATTGTGTAGATAGATGTCTATGGTGGG
TCTTGGAGCAATTATGACGGCAAATTGATCGGCAAAAAGCCCTGAAAAGC
AGCAAGGTCATATATTATCATCATATGTCATAAAGGAGGTAGAGGGGAGC
ATGAAAAGCAGGAGTAAGAGATGTGAAGATGGACTTAAGTTGTTGGCACA
TATGTATACGTAGGATGTATATA
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Coding sequence (CDS) from alignment at chr6:853901..855273+

>NO06G02990.1 ID=NO06G02990.1|Name=NO06G02990.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr6:853901..855273+ (Nannochloropsis oceanica)
ATGCTGCCCGCATCTTCCCGGGCCGGTCTGAGACTTTCTGGGACACGGAC
AGGTAGACACAGCACCAGGACAGTGATGACGTGCCTGTCCCTGCAAACAC
AGCTCGCGCTGGGGCTGCACCACCACGCCATCCACCGCAATAAGTACAAC
CAGCCCTTCCATGCCCTTCAAACCTTCGGCAGATTTAGTGATATAGAACG
AGTGGGAAGACAGTTGGGTTCGGTGGGAGCTTTGCGCATTGGGTTTTTAC
GCACCAGCGGCGGCAGAAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGC
AGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGCGGCAG
TAGCAGCAGTAGCAGTATGACTTCCAACACCGGCACCGAATCAACATTGT
CAAAATTAGATTCCCCCGCGTACCACAAAAGTAAGGAGGAAGAAGCTCCG
GTCACCTCTACCAAGGCAGCAGCCGCACCAACCTTACCTCAGCACCACAC
TGAAGCAGACGACAACGGTAGCGGCGGTGGCATCGAGGGTCGCAATCGTG
AGCTCCTTGCCACGTTCACGATGGTTGCTAGCGTGCTGTGTGCGATCGAC
TGCACTGTCTTCCCCGTCCTTCTTACCGTGCTCCCTGCCGCTGAATGGTT
GGGAGGGGTAGATTTACATGCCCTTTCAACCAACGTGGCTTTGTATTTGG
TCTTGCCGATAGGGAGTACTACCACGCTGGCTAATTGGTTAATGCACCGC
AACCTGACCTTGGCAGCCATGAGTGTGGGGGGTCTGTCGTTGATTTTAAT
GAGTAATTATGCGGGTTTGACGGAGACTCTTGGATGGATGCAGGATTCAC
GGATGTATAATACGGTGGGATGCGGGTTGTTGCTCGGCTCGTCGTGGTTG
GCACATCACCATGAGAAGGATAGTGGTCATCATGGTGGTGAGAAAGGAGG
AACAGGGAAAGGAAAGAAGCGTTGCAACTAG
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Synonyms
Publications