NO06G02910.1, NO06G02910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02910.1
Unique NameNO06G02910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2016
Alignment locationchr6:834579..836594 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:834579..836594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02910.1 vs.
Match: EWM26302.1 (melibiase family protein [Nannochloropsis gaditana])

HSP 1 Score: 652.1 bits (1681), Expect = 1.800e-183
Identity = 367/666 (55.11%), Postives = 445/666 (66.82%), Query Frame = 0 
Query:   16 LLLSLLSI--TITLTTLPMSTVALSNGMGLTPAMGFNTWNKFGCNIDEALLKETAQLLIDTGLKDKGYSYVNLDDCWMERNRTADGRLVEDPIKFPSGLKALGEYLHGLGFKFGIYSSAGYATCEKYPASLGMEELDAQTWANWGVDYLKYDNCYTDGTPPEMRYPPMRDALNGTGRPMLYSICEWGLNNPGGWAREVGNSWRTTPDIRDEWTSVMEIVEVNGRRWRYGRRGGWNDPDMLEVGNGGMSGEEYRSHMSLWCVMKAPLLIGCDLKGLEIGGEILNLLGNEEVLSVNQDALGRQARRVWSSALEGGRGGMEGMGVKS---AIMVPCERT-EEGEGDDVDAVFWAVEPAAEEVVKMKVDKGGVPTATAALDTRAREAEVVTLRLLAKDGGDADLSLCLAVADQGLDEKQGLEMGEEEEE------EGDVAAISRSMLLRGSAGGEEDKATTAKKAEVVSFPDTGMGVALEPCVCFPSSVSSSSAAATRQQWLRDGSMLMPVTAPHLCLSVVRSTLNILNTGIAIELVACNETREVQQWTIKEKTTTVVNER----GKDIGKWGDQAGGLMTENMGEISPDFSQSSSSSSALPQLLINNWQQQCLAPETDAPPGAQEIWMGPLSDNAVVVLLFNRSPVANRISARWSDLGLVKGGREGGGE 666
            +LLS+++   ++ L T  ++T AL NG+GLTPAMGFNTWN+F C+IDEA++KETA+LLIDTGL+D GY +VNLDDCWM RNR+A+G LVEDP+KFPSG+K LG+YLH LGFKFGIYSSAG ATCE +PASLGME  DA+TW+ WGVDYLKYDNC+TDGT P+ RYPPMRDALN TGRP+LYS+CEWGL+NPG WA  V N WRTTPDIRDEW+SVMEIVE+NGRRWRY   GG+NDPDMLEVGNGGM  EEYR+HMSLWCVMKAPLLIGCDL+G  +  ++L LLGNEEV++VNQD LG QARRVWSS   GGRG  +G    S   AI+VPC    E+GE    DAV+W +EPA   + ++    GG   A    D+    AE+V++R +   GG   +  CLAV + GL     +E GEE         EGD              GG +D A        +     G+ V L PC+  P+  S        Q W R GS+LMP +APHLCL V+RS  + L TG+A+EL  CN +   QQW  +    ++  E     G +  K     G     +    +P      SSS   PQLL+N +Q QCLAPETDAP GAQEIW+GPLS  A V+LLFNRS V+ RISA W DLGL  G  EG  E
Sbjct:   12 VLLSVIATIPSLLLFTSTVTTNALPNGLGLTPAMGFNTWNRFHCDIDEAMVKETARLLIDTGLRDLGYVFVNLDDCWMARNRSAEGGLVEDPVKFPSGIKGLGDYLHALGFKFGIYSSAGSATCEGFPASLGMEGRDAETWSEWGVDYLKYDNCHTDGTSPQERYPPMRDALNATGRPVLYSMCEWGLDNPGAWAPAVSNLWRTTPDIRDEWSSVMEIVEINGRRWRYAGPGGFNDPDMLEVGNGGMGLEEYRAHMSLWCVMKAPLLIGCDLRGATM--DVLALLGNEEVIAVNQDPLGVQARRVWSSGSGGGRGVGKGGSPGSPFPAIVVPCALAPEKGE----DAVWWILEPAG--LAEVAEGGGG---ARGPSDSGGG-AELVSVRSVGSGGGKGTVQYCLAVKE-GLGGHGRVE-GEEITRVMRLRWEGDSMEEGVRKKEASVTGGRQDVAQEDDADAGMPLSSVGLRVTLAPCLG-PAPFSLFERTGKEQLWRRKGSLLMPESAPHLCLGVIRSNQDPLRTGLAVELAPCNASLPRQQWETEAGPGSLRAEGMGTPGAEESKAAWFGGEEPLRSSSVWAPPVGGLGSSS---PQLLVNAFQHQCLAPETDAPAGAQEIWIGPLSGGAFVLLLFNRSTVSARISALWRDLGL--GLEEGSYE 657
The following BLAST results are available for this feature:
BLAST of NO06G02910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26302.11.800e-18355.11melibiase family protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02910NO06G02910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02910.1NO06G02910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02910.1.cds1NO06G02910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02910.1 ID=NO06G02910.1|Name=NO06G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp
ATGCGGTGGGTCAAGCCAGAAGCGGGCGCTCGGGATAGCCTATCCCTCCT
CCTATCCCTCCTGAGCATCACCATCACTTTGACAACCCTGCCAATGTCCA
CCGTGGCCTTGTCCAATGGCATGGGGCTCACACCCGCCATGGGCTTCAAT
ACATGGAATAAATTCGGGTGCAATATCGACGAGGCTCTGCTGAAAGAGAC
GGCGCAACTCCTGATTGACACGGGGCTAAAGGACAAGGGCTATTCGTATG
TCAATTTGGATGACTGCTGGATGGAGAGAAATCGCACCGCCGACGGGCGC
CTGGTGGAGGATCCGATCAAGTTTCCCTCGGGGCTCAAGGCCTTGGGCGA
GTATTTGCATGGATTGGGGTTTAAATTTGGGATCTATTCTAGCGCGGGGT
ATGCGACGTGCGAGAAGTACCCAGCATCGTTGGGGATGGAGGAGTTAGAC
GCGCAGACATGGGCCAATTGGGGGGTAGATTATTTAAAATACGACAATTG
TTATACAGATGGGACGCCACCTGAAATGCGGTACCCACCAATGAGGGATG
CCCTGAACGGAACGGGCCGGCCGATGTTGTATTCGATATGTGAGTGGGGG
TTGAACAACCCTGGGGGATGGGCGAGGGAAGTGGGGAACAGCTGGAGGAC
GACGCCTGATATAAGGGATGAGTGGACATCGGTGATGGAGATTGTGGAGG
TGAATGGACGGAGATGGAGGTATGGCAGGAGGGGGGGTTGGAATGATCCA
GATATGCTGGAGGTGGGAAATGGCGGGATGAGCGGGGAGGAATATAGGAG
CCACATGTCTTTGTGGTGTGTGATGAAGGCGCCTTTGCTAATTGGATGTG
ACTTGAAGGGGTTGGAGATAGGAGGGGAGATTCTGAATTTGTTGGGAAAT
GAGGAGGTGTTAAGCGTGAACCAGGACGCGTTGGGGAGGCAGGCACGGAG
GGTGTGGTCTTCTGCACTAGAGGGAGGGAGAGGAGGGATGGAAGGGATGG
GGGTTAAAAGTGCTATCATGGTGCCGTGTGAAAGAACGGAGGAGGGGGAG
GGAGACGATGTGGATGCTGTATTTTGGGCAGTAGAGCCGGCGGCGGAGGA
GGTGGTGAAGATGAAGGTGGATAAAGGAGGAGTGCCGACTGCTACTGCTG
CTCTTGACACTCGCGCGAGGGAAGCAGAAGTAGTGACTCTCCGGTTGTTG
GCGAAAGATGGAGGAGACGCAGATCTTAGTCTATGCCTTGCTGTGGCTGA
TCAGGGATTGGATGAGAAGCAGGGCTTGGAAATGGGGGAGGAGGAGGAGG
AGGAGGGGGATGTGGCGGCCATCAGTCGCTCCATGCTTCTTCGAGGCTCT
GCAGGTGGAGAAGAAGATAAAGCCACAACCGCCAAAAAAGCAGAAGTAGT
ATCATTTCCCGATACGGGCATGGGAGTGGCGCTGGAGCCCTGCGTTTGCT
TCCCCTCTTCCGTTTCCTCCTCATCGGCGGCGGCAACGCGTCAGCAGTGG
CTGCGGGATGGATCGATGCTCATGCCTGTCACAGCCCCCCATTTGTGTTT
GTCTGTGGTGAGGAGCACTTTGAATATTTTGAACACAGGAATAGCGATCG
AGTTGGTGGCATGTAATGAAACACGTGAGGTGCAACAGTGGACGATTAAG
GAGAAAACGACAACGGTGGTCAACGAGCGAGGGAAGGATATAGGAAAATG
GGGGGATCAGGCGGGTGGGCTCATGACAGAGAATATGGGGGAAATCAGTC
CAGATTTTTCTCAGTCTTCTTCTTCCTCCTCCGCATTACCGCAATTGCTT
ATCAACAATTGGCAACAGCAATGCCTAGCTCCCGAGACCGATGCTCCTCC
TGGTGCCCAGGAAATCTGGATGGGTCCCCTTTCCGATAATGCTGTTGTCG
TTCTCCTCTTCAATCGCAGCCCTGTCGCCAATAGAATTTCTGCCAGATGG
AGTGATCTCGGGTTAGTCAAAGGGGGAAGGGAGGGAGGGGGGGAGAGGAT
GAGAAGGAGAAGGTGA
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protein sequence of NO06G02910.1

>NO06G02910.1-protein ID=NO06G02910.1-protein|Name=NO06G02910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp
MRWVKPEAGARDSLSLLLSLLSITITLTTLPMSTVALSNGMGLTPAMGFN
TWNKFGCNIDEALLKETAQLLIDTGLKDKGYSYVNLDDCWMERNRTADGR
LVEDPIKFPSGLKALGEYLHGLGFKFGIYSSAGYATCEKYPASLGMEELD
AQTWANWGVDYLKYDNCYTDGTPPEMRYPPMRDALNGTGRPMLYSICEWG
LNNPGGWAREVGNSWRTTPDIRDEWTSVMEIVEVNGRRWRYGRRGGWNDP
DMLEVGNGGMSGEEYRSHMSLWCVMKAPLLIGCDLKGLEIGGEILNLLGN
EEVLSVNQDALGRQARRVWSSALEGGRGGMEGMGVKSAIMVPCERTEEGE
GDDVDAVFWAVEPAAEEVVKMKVDKGGVPTATAALDTRAREAEVVTLRLL
AKDGGDADLSLCLAVADQGLDEKQGLEMGEEEEEEGDVAAISRSMLLRGS
AGGEEDKATTAKKAEVVSFPDTGMGVALEPCVCFPSSVSSSSAAATRQQW
LRDGSMLMPVTAPHLCLSVVRSTLNILNTGIAIELVACNETREVQQWTIK
EKTTTVVNERGKDIGKWGDQAGGLMTENMGEISPDFSQSSSSSSALPQLL
INNWQQQCLAPETDAPPGAQEIWMGPLSDNAVVVLLFNRSPVANRISARW
SDLGLVKGGREGGGERMRRRR*
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mRNA from alignment at chr6:834579..836594+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02910.1 ID=NO06G02910.1|Name=NO06G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp|location=Sequence derived from alignment at chr6:834579..836594+ (Nannochloropsis oceanica)
ATGCGGTGGGTCAAGCCAGAAGCGGGCGCTCGGGATAGCCTATCCCTCCT
CCTATCCCTCCTGAGCATCACCATCACTTTGACAACCCTGCCAATGTCCA
CCGTGGCCTTGTCCAATGGCATGGGGCTCACACCCGCCATGGGCTTCAAT
ACATGGAATAAATTCGGGTGCAATATCGACGAGGCTCTGCTGAAAGAGAC
GGCGCAACTCCTGATTGACACGGGGCTAAAGGACAAGGGCTATTCGTATG
TCAATTTGGATGACTGCTGGATGGAGAGAAATCGCACCGCCGACGGGCGC
CTGGTGGAGGATCCGATCAAGTTTCCCTCGGGGCTCAAGGCCTTGGGCGA
GTATTTGCATGGATTGGGGTTTAAATTTGGGATCTATTCTAGCGCGGGGT
ATGCGACGTGCGAGAAGTACCCAGCATCGTTGGGGATGGAGGAGTTAGAC
GCGCAGACATGGGCCAATTGGGGGGTAGATTATTTAAAATACGACAATTG
TTATACAGATGGGACGCCACCTGAAATGCGGTACCCACCAATGAGGGATG
CCCTGAACGGAACGGGCCGGCCGATGTTGTATTCGATATGTGAGTGGGGG
TTGAACAACCCTGGGGGATGGGCGAGGGAAGTGGGGAACAGCTGGAGGAC
GACGCCTGATATAAGGGATGAGTGGACATCGGTGATGGAGATTGTGGAGG
TGAATGGACGGAGATGGAGGTATGGCAGGAGGGGGGGTTGGAATGATCCA
GATATGCTGGAGGTGGGAAATGGCGGGATGAGCGGGGAGGAATATAGGAG
CCACATGTCTTTGTGGTGTGTGATGAAGGCGCCTTTGCTAATTGGATGTG
ACTTGAAGGGGTTGGAGATAGGAGGGGAGATTCTGAATTTGTTGGGAAAT
GAGGAGGTGTTAAGCGTGAACCAGGACGCGTTGGGGAGGCAGGCACGGAG
GGTGTGGTCTTCTGCACTAGAGGGAGGGAGAGGAGGGATGGAAGGGATGG
GGGTTAAAAGTGCTATCATGGTGCCGTGTGAAAGAACGGAGGAGGGGGAG
GGAGACGATGTGGATGCTGTATTTTGGGCAGTAGAGCCGGCGGCGGAGGA
GGTGGTGAAGATGAAGGTGGATAAAGGAGGAGTGCCGACTGCTACTGCTG
CTCTTGACACTCGCGCGAGGGAAGCAGAAGTAGTGACTCTCCGGTTGTTG
GCGAAAGATGGAGGAGACGCAGATCTTAGTCTATGCCTTGCTGTGGCTGA
TCAGGGATTGGATGAGAAGCAGGGCTTGGAAATGGGGGAGGAGGAGGAGG
AGGAGGGGGATGTGGCGGCCATCAGTCGCTCCATGCTTCTTCGAGGCTCT
GCAGGTGGAGAAGAAGATAAAGCCACAACCGCCAAAAAAGCAGAAGTAGT
ATCATTTCCCGATACGGGCATGGGAGTGGCGCTGGAGCCCTGCGTTTGCT
TCCCCTCTTCCGTTTCCTCCTCATCGGCGGCGGCAACGCGTCAGCAGTGG
CTGCGGGATGGATCGATGCTCATGCCTGTCACAGCCCCCCATTTGTGTTT
GTCTGTGGTGAGGAGCACTTTGAATATTTTGAACACAGGAATAGCGATCG
AGTTGGTGGCATGTAATGAAACACGTGAGGTGCAACAGTGGACGATTAAG
GAGAAAACGACAACGGTGGTCAACGAGCGAGGGAAGGATATAGGAAAATG
GGGGGATCAGGCGGGTGGGCTCATGACAGAGAATATGGGGGAAATCAGTC
CAGATTTTTCTCAGTCTTCTTCTTCCTCCTCCGCATTACCGCAATTGCTT
ATCAACAATTGGCAACAGCAATGCCTAGCTCCCGAGACCGATGCTCCTCC
TGGTGCCCAGGAAATCTGGATGGGTCCCCTTTCCGATAATGCTGTTGTCG
TTCTCCTCTTCAATCGCAGCCCTGTCGCCAATAGAATTTCTGCCAGATGG
AGTGATCTCGGGTTAGTCAAAGGGGGAAGGGAGGGAGGGGGGGAGAGGAT
GAGAAGGAGAAGGTGA
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Coding sequence (CDS) from alignment at chr6:834579..836594+

>NO06G02910.1 ID=NO06G02910.1|Name=NO06G02910.1|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at chr6:834579..836594+ (Nannochloropsis oceanica)
ATGCGGTGGGTCAAGCCAGAAGCGGGCGCTCGGGATAGCCTATCCCTCCT
CCTATCCCTCCTGAGCATCACCATCACTTTGACAACCCTGCCAATGTCCA
CCGTGGCCTTGTCCAATGGCATGGGGCTCACACCCGCCATGGGCTTCAAT
ACATGGAATAAATTCGGGTGCAATATCGACGAGGCTCTGCTGAAAGAGAC
GGCGCAACTCCTGATTGACACGGGGCTAAAGGACAAGGGCTATTCGTATG
TCAATTTGGATGACTGCTGGATGGAGAGAAATCGCACCGCCGACGGGCGC
CTGGTGGAGGATCCGATCAAGTTTCCCTCGGGGCTCAAGGCCTTGGGCGA
GTATTTGCATGGATTGGGGTTTAAATTTGGGATCTATTCTAGCGCGGGGT
ATGCGACGTGCGAGAAGTACCCAGCATCGTTGGGGATGGAGGAGTTAGAC
GCGCAGACATGGGCCAATTGGGGGGTAGATTATTTAAAATACGACAATTG
TTATACAGATGGGACGCCACCTGAAATGCGGTACCCACCAATGAGGGATG
CCCTGAACGGAACGGGCCGGCCGATGTTGTATTCGATATGTGAGTGGGGG
TTGAACAACCCTGGGGGATGGGCGAGGGAAGTGGGGAACAGCTGGAGGAC
GACGCCTGATATAAGGGATGAGTGGACATCGGTGATGGAGATTGTGGAGG
TGAATGGACGGAGATGGAGGTATGGCAGGAGGGGGGGTTGGAATGATCCA
GATATGCTGGAGGTGGGAAATGGCGGGATGAGCGGGGAGGAATATAGGAG
CCACATGTCTTTGTGGTGTGTGATGAAGGCGCCTTTGCTAATTGGATGTG
ACTTGAAGGGGTTGGAGATAGGAGGGGAGATTCTGAATTTGTTGGGAAAT
GAGGAGGTGTTAAGCGTGAACCAGGACGCGTTGGGGAGGCAGGCACGGAG
GGTGTGGTCTTCTGCACTAGAGGGAGGGAGAGGAGGGATGGAAGGGATGG
GGGTTAAAAGTGCTATCATGGTGCCGTGTGAAAGAACGGAGGAGGGGGAG
GGAGACGATGTGGATGCTGTATTTTGGGCAGTAGAGCCGGCGGCGGAGGA
GGTGGTGAAGATGAAGGTGGATAAAGGAGGAGTGCCGACTGCTACTGCTG
CTCTTGACACTCGCGCGAGGGAAGCAGAAGTAGTGACTCTCCGGTTGTTG
GCGAAAGATGGAGGAGACGCAGATCTTAGTCTATGCCTTGCTGTGGCTGA
TCAGGGATTGGATGAGAAGCAGGGCTTGGAAATGGGGGAGGAGGAGGAGG
AGGAGGGGGATGTGGCGGCCATCAGTCGCTCCATGCTTCTTCGAGGCTCT
GCAGGTGGAGAAGAAGATAAAGCCACAACCGCCAAAAAAGCAGAAGTAGT
ATCATTTCCCGATACGGGCATGGGAGTGGCGCTGGAGCCCTGCGTTTGCT
TCCCCTCTTCCGTTTCCTCCTCATCGGCGGCGGCAACGCGTCAGCAGTGG
CTGCGGGATGGATCGATGCTCATGCCTGTCACAGCCCCCCATTTGTGTTT
GTCTGTGGTGAGGAGCACTTTGAATATTTTGAACACAGGAATAGCGATCG
AGTTGGTGGCATGTAATGAAACACGTGAGGTGCAACAGTGGACGATTAAG
GAGAAAACGACAACGGTGGTCAACGAGCGAGGGAAGGATATAGGAAAATG
GGGGGATCAGGCGGGTGGGCTCATGACAGAGAATATGGGGGAAATCAGTC
CAGATTTTTCTCAGTCTTCTTCTTCCTCCTCCGCATTACCGCAATTGCTT
ATCAACAATTGGCAACAGCAATGCCTAGCTCCCGAGACCGATGCTCCTCC
TGGTGCCCAGGAAATCTGGATGGGTCCCCTTTCCGATAATGCTGTTGTCG
TTCTCCTCTTCAATCGCAGCCCTGTCGCCAATAGAATTTCTGCCAGATGG
AGTGATCTCGGGTTAGTCAAAGGGGGAAGGGAGGGAGGGGGGGAGAGGAT
GAGAAGGAGAAGGTGA
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Synonyms
Publications