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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr6 | genome | chr6:761848..763511 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02700.1 vs.
Match: OWZ23071.1 (Tubby [Phytophthora megakarya]) HSP 1 Score: 292.7 bits (748), Expect = 2.200e-75 Identity = 157/318 (49.37%), Postives = 204/318 (64.15%), Query Frame = 0
Query: 215 KNDDDSGVDDSISVNAALAFQTSESTRSLDLNILLATRA--------DVRRFVTHPIPRTAGVVHCYIKRRKAGTGKLYPEYHLYTRQGSHFLMAAKKQANNKTSNYHVTLNDRDFAKESPD-YLGKLRANFVGTEFQIFDRGSNGSTNSKGVDGAEVLGPNSGPSNASAPREELGVVVYAANVLGARGPRKMQAFLPRVSKVDDRMVVWKSKEDLAEQDAMLERVRRGDTAKFHHFINKPPRWNDQVGAYVLNFMGRVTMASVKNFQLIEPEDHELVVLQFGRVGRHDFTMDVRWPFTPLQALAVALSSFDSKIACD 524
++ D+ DD + NAA ++ S + R D A D+R F+ PIP+ VV CYI+R K+G K++PEY LY ++G FL+ AKK+ N+TSNY ++L D + D Y+GKLRANF+GTEF I+D+G+N K VD + SN + R+ELG+ +YAANVLG RGPRKM+ +PRV + D VVW+ L ++D M+ + + D + INKPPRWNDQV AYVLNF GRVTMASVKNFQL+ PED E VVLQFGRVG+ FTMD RWP PLQA A+ LSSFDSK+AC+
Sbjct: 317 RSASDASSDDDRNHNAATSYDPSSNARDGDRGRPAAANVRKPKLDITDMRSFILRPIPKAYDVVECYIERNKSGANKVFPEYCLYMKEGDRFLLTAKKRPKNRTSNYLISLQRGDLLRRGSDNYVGKLRANFLGTEFTIYDQGAN----PKDVDQQTIT------SNPAGIRQELGIAMYAANVLGHRGPRKMKVCVPRV-RDDGTRVVWRP---LTKEDEMVNKCKEQDHTNLTYLINKPPRWNDQVCAYVLNFNGRVTMASVKNFQLVTPEDQETVVLQFGRVGKDLFTMDFRWPLCPLQAFAITLSSFDSKLACE 620
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02700.1 ID=NO06G02700.1|Name=NO06G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp
ACCAGCAACCAAACAGCATACATGAATGACGGGCAAAGTGACAGAGACTG
TGTTGCTGATCCACTACCACCTCCGCTTGTACCGTCCTCAAGCAGCGGCA
CTTGTACTTTCTTACCCTCCACGTCCACGCCTGCGAAGTTCTCTTTCGCC
TCCTCAGATAGCTATAACGGGAGCAGTGAAATGAAAGCGCACATTCTGGC
ACAACAGCGGGAGGTCATGCTGCGGCGCCGGCACGAAGGCATGCGGGCAG
AAGCTGTGCGCTCTGTCGAAGATCCCTCCTCGCTCTCTTCGACGACGGCT
TCAGCATACCACACACCGGGCATAAAGCAATTTTCCATGCCCCAAACCGG
AGAGGATGAAAACCGAGCGAACCAAAATGTTGCTAAACAAAGCAAGCGCG
TGGTACCCATGCCCCAAGGGCCGCCGCCCACACCGGCCTCAAGGCGCATT
CATTCCTATCGGGCCCACATTTCCTCTTCCTCGTCCTTTGACAATAAAAA
GGAAGCAGCCACTTCCAAACCCCCTTCCAAGCCTTCAAGAGGACCTCCAG
CCACGACATCACTCAACGCCAATGACGAAAGCGAGTCCTCCGATTCGGAG
GGAGACAACGACGAAAGCCCGCCGGGCAACAGTAAGACCTCCCCCCCCAC
CTCCCTGTCCCTCAAAAACGACGATGATAGTGGCGTCGATGACAGCATAT
CCGTTAATGCTGCCTTGGCTTTTCAAACTTCAGAATCTACCCGCTCTTTG
GACCTGAACATCCTCCTAGCCACCCGCGCGGACGTCCGTCGTTTTGTCAC
TCACCCTATCCCCCGCACCGCCGGCGTCGTGCATTGTTATATCAAGCGTC
GCAAAGCCGGGACCGGTAAACTCTATCCCGAGTATCACCTTTATACACGT
CAAGGGAGCCATTTCCTAATGGCGGCCAAGAAACAAGCGAATAACAAGAC
GTCCAACTACCACGTGACGTTAAACGACCGCGATTTCGCGAAGGAAAGCC
CCGATTACCTAGGGAAGCTCCGTGCAAATTTTGTGGGGACAGAATTCCAG
ATCTTCGACCGCGGAAGCAACGGCAGCACCAACAGCAAAGGTGTAGATGG
GGCGGAGGTACTTGGGCCGAATAGTGGACCGTCAAATGCCAGTGCGCCGA
GGGAAGAGTTAGGGGTGGTGGTGTACGCTGCGAATGTACTAGGTGCGCGA
GGTCCCCGAAAAATGCAAGCATTTTTACCGCGTGTTAGTAAGGTAGACGA
CCGAATGGTGGTATGGAAGTCCAAGGAGGATCTGGCGGAGCAGGATGCGA
TGCTTGAGAGGGTCCGGAGGGGGGATACGGCGAAGTTTCATCATTTTATT
AATAAGCCCCCTAGGTGGAATGACCAGGTAGGGGCGTACGTGTTGAATTT
TATGGGAAGGGTGACCATGGCTTCGGTGAAGAATTTTCAATTGATTGAGC
CTGAAGACCATGAGTTGGTGGTGTTGCAGTTTGGACGGGTGGGGAGGCAC
GATTTTACAATGGATGTCAGGTGGCCCTTCACACCCCTACAGGCTTTGGC
GGTGGCGTTGAGTTCGTTTGATTCGAAGATTGCGTGTGATTAGGAAAAGA
AAAAGAAGGTAGAAGAACAAAGAGGTATACAGGAGAATAAGGAAAGTAGC
AATTTTATTTACGC back to topprotein sequence of NO06G02700.1 >NO06G02700.1-protein ID=NO06G02700.1-protein|Name=NO06G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MNDGQSDRDCVADPLPPPLVPSSSSGTCTFLPSTSTPAKFSFASSDSYNG
SSEMKAHILAQQREVMLRRRHEGMRAEAVRSVEDPSSLSSTTASAYHTPG
IKQFSMPQTGEDENRANQNVAKQSKRVVPMPQGPPPTPASRRIHSYRAHI
SSSSSFDNKKEAATSKPPSKPSRGPPATTSLNANDESESSDSEGDNDESP
PGNSKTSPPTSLSLKNDDDSGVDDSISVNAALAFQTSESTRSLDLNILLA
TRADVRRFVTHPIPRTAGVVHCYIKRRKAGTGKLYPEYHLYTRQGSHFLM
AAKKQANNKTSNYHVTLNDRDFAKESPDYLGKLRANFVGTEFQIFDRGSN
GSTNSKGVDGAEVLGPNSGPSNASAPREELGVVVYAANVLGARGPRKMQA
FLPRVSKVDDRMVVWKSKEDLAEQDAMLERVRRGDTAKFHHFINKPPRWN
DQVGAYVLNFMGRVTMASVKNFQLIEPEDHELVVLQFGRVGRHDFTMDVR
WPFTPLQALAVALSSFDSKIACD* back to topmRNA from alignment at chr6:761848..763511- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02700.1 ID=NO06G02700.1|Name=NO06G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp|location=Sequence derived from alignment at chr6:761848..763511- (Nannochloropsis oceanica)
ACCAGCAACCAAACAGCATACATGAATGACGGGCAAAGTGACAGAGACTG
TGTTGCTGATCCACTACCACCTCCGCTTGTACCGTCCTCAAGCAGCGGCA
CTTGTACTTTCTTACCCTCCACGTCCACGCCTGCGAAGTTCTCTTTCGCC
TCCTCAGATAGCTATAACGGGAGCAGTGAAATGAAAGCGCACATTCTGGC
ACAACAGCGGGAGGTCATGCTGCGGCGCCGGCACGAAGGCATGCGGGCAG
AAGCTGTGCGCTCTGTCGAAGATCCCTCCTCGCTCTCTTCGACGACGGCT
TCAGCATACCACACACCGGGCATAAAGCAATTTTCCATGCCCCAAACCGG
AGAGGATGAAAACCGAGCGAACCAAAATGTTGCTAAACAAAGCAAGCGCG
TGGTACCCATGCCCCAAGGGCCGCCGCCCACACCGGCCTCAAGGCGCATT
CATTCCTATCGGGCCCACATTTCCTCTTCCTCGTCCTTTGACAATAAAAA
GGAAGCAGCCACTTCCAAACCCCCTTCCAAGCCTTCAAGAGGACCTCCAG
CCACGACATCACTCAACGCCAATGACGAAAGCGAGTCCTCCGATTCGGAG
GGAGACAACGACGAAAGCCCGCCGGGCAACAGTAAGACCTCCCCCCCCAC
CTCCCTGTCCCTCAAAAACGACGATGATAGTGGCGTCGATGACAGCATAT
CCGTTAATGCTGCCTTGGCTTTTCAAACTTCAGAATCTACCCGCTCTTTG
GACCTGAACATCCTCCTAGCCACCCGCGCGGACGTCCGTCGTTTTGTCAC
TCACCCTATCCCCCGCACCGCCGGCGTCGTGCATTGTTATATCAAGCGTC
GCAAAGCCGGGACCGGTAAACTCTATCCCGAGTATCACCTTTATACACGT
CAAGGGAGCCATTTCCTAATGGCGGCCAAGAAACAAGCGAATAACAAGAC
GTCCAACTACCACGTGACGTTAAACGACCGCGATTTCGCGAAGGAAAGCC
CCGATTACCTAGGGAAGCTCCGTGCAAATTTTGTGGGGACAGAATTCCAG
ATCTTCGACCGCGGAAGCAACGGCAGCACCAACAGCAAAGGTGTAGATGG
GGCGGAGGTACTTGGGCCGAATAGTGGACCGTCAAATGCCAGTGCGCCGA
GGGAAGAGTTAGGGGTGGTGGTGTACGCTGCGAATGTACTAGGTGCGCGA
GGTCCCCGAAAAATGCAAGCATTTTTACCGCGTGTTAGTAAGGTAGACGA
CCGAATGGTGGTATGGAAGTCCAAGGAGGATCTGGCGGAGCAGGATGCGA
TGCTTGAGAGGGTCCGGAGGGGGGATACGGCGAAGTTTCATCATTTTATT
AATAAGCCCCCTAGGTGGAATGACCAGGTAGGGGCGTACGTGTTGAATTT
TATGGGAAGGGTGACCATGGCTTCGGTGAAGAATTTTCAATTGATTGAGC
CTGAAGACCATGAGTTGGTGGTGTTGCAGTTTGGACGGGTGGGGAGGCAC
GATTTTACAATGGATGTCAGGTGGCCCTTCACACCCCTACAGGCTTTGGC
GGTGGCGTTGAGTTCGTTTGATTCGAAGATTGCGTGTGATTAGGAAAAGA
AAAAGAAGGTAGAAGAACAAAGAGGTATACAGGAGAATAAGGAAAGTAGC
AATTTTATTTACGC back to topCoding sequence (CDS) from alignment at chr6:761848..763511- >NO06G02700.1 ID=NO06G02700.1|Name=NO06G02700.1|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at chr6:761848..763511- (Nannochloropsis oceanica)
ATGAATGACGGGCAAAGTGACAGAGACTGTGTTGCTGATCCACTACCACC
TCCGCTTGTACCGTCCTCAAGCAGCGGCACTTGTACTTTCTTACCCTCCA
CGTCCACGCCTGCGAAGTTCTCTTTCGCCTCCTCAGATAGCTATAACGGG
AGCAGTGAAATGAAAGCGCACATTCTGGCACAACAGCGGGAGGTCATGCT
GCGGCGCCGGCACGAAGGCATGCGGGCAGAAGCTGTGCGCTCTGTCGAAG
ATCCCTCCTCGCTCTCTTCGACGACGGCTTCAGCATACCACACACCGGGC
ATAAAGCAATTTTCCATGCCCCAAACCGGAGAGGATGAAAACCGAGCGAA
CCAAAATGTTGCTAAACAAAGCAAGCGCGTGGTACCCATGCCCCAAGGGC
CGCCGCCCACACCGGCCTCAAGGCGCATTCATTCCTATCGGGCCCACATT
TCCTCTTCCTCGTCCTTTGACAATAAAAAGGAAGCAGCCACTTCCAAACC
CCCTTCCAAGCCTTCAAGAGGACCTCCAGCCACGACATCACTCAACGCCA
ATGACGAAAGCGAGTCCTCCGATTCGGAGGGAGACAACGACGAAAGCCCG
CCGGGCAACAGTAAGACCTCCCCCCCCACCTCCCTGTCCCTCAAAAACGA
CGATGATAGTGGCGTCGATGACAGCATATCCGTTAATGCTGCCTTGGCTT
TTCAAACTTCAGAATCTACCCGCTCTTTGGACCTGAACATCCTCCTAGCC
ACCCGCGCGGACGTCCGTCGTTTTGTCACTCACCCTATCCCCCGCACCGC
CGGCGTCGTGCATTGTTATATCAAGCGTCGCAAAGCCGGGACCGGTAAAC
TCTATCCCGAGTATCACCTTTATACACGTCAAGGGAGCCATTTCCTAATG
GCGGCCAAGAAACAAGCGAATAACAAGACGTCCAACTACCACGTGACGTT
AAACGACCGCGATTTCGCGAAGGAAAGCCCCGATTACCTAGGGAAGCTCC
GTGCAAATTTTGTGGGGACAGAATTCCAGATCTTCGACCGCGGAAGCAAC
GGCAGCACCAACAGCAAAGGTGTAGATGGGGCGGAGGTACTTGGGCCGAA
TAGTGGACCGTCAAATGCCAGTGCGCCGAGGGAAGAGTTAGGGGTGGTGG
TGTACGCTGCGAATGTACTAGGTGCGCGAGGTCCCCGAAAAATGCAAGCA
TTTTTACCGCGTGTTAGTAAGGTAGACGACCGAATGGTGGTATGGAAGTC
CAAGGAGGATCTGGCGGAGCAGGATGCGATGCTTGAGAGGGTCCGGAGGG
GGGATACGGCGAAGTTTCATCATTTTATTAATAAGCCCCCTAGGTGGAAT
GACCAGGTAGGGGCGTACGTGTTGAATTTTATGGGAAGGGTGACCATGGC
TTCGGTGAAGAATTTTCAATTGATTGAGCCTGAAGACCATGAGTTGGTGG
TGTTGCAGTTTGGACGGGTGGGGAGGCACGATTTTACAATGGATGTCAGG
TGGCCCTTCACACCCCTACAGGCTTTGGCGGTGGCGTTGAGTTCGTTTGA
TTCGAAGATTGCGTGTGATTAG back to top
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