NO06G02590.1, NO06G02590.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G02590.1
Unique Name	NO06G02590.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	867
Alignment location	chr6:727579..728445 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:727579..728445 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO06G02590.1 vs.

BLAST of NO06G02590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G02590	NO06G02590	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G02590.1	NO06G02590.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G02590.1.cds1	NO06G02590.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:727579..728445-
coding sequence from alignment at chr6:727579..728445-

mRNA sequence

>NO06G02590.1 ID=NO06G02590.1|Name=NO06G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=867bp
ATGGCCTTGGAAACGCTGCAATCTCTTAACCACGCCATTGCCCAGAGCAA
GGCCTCCTACGAACACGACGTATTAAAACTCCAACAACGTCGGGCGTTGC
GTGACGCTGGGGCAGCGGAAGTGCTCTCTCCGTTGCTGCAAGAGGGGAAG
GATACGGTGCGAAAAATGGAGGAGCAAGAGAGGGGTATGTCGGAGGATGT
TCAAAGTTGCTTAATGATGGTTGTGGAGAGCTTGGGGGAGAAAGCTATTA
TTCTAAATGAACACCATCGCTTGGCACGTCTGCAGAAGGTGGTGGCTGCG
AGGGTGAGGAACTTCCGCACCCGTGTGGCGGAAAAGGGGGCGATGGCCCT
GGAGGAGGAAAAGGCGAGGGCAGGGAAGGAGGTGGAAGTAGAGGGGGAGA
GATTAAAGGAGGAATTGGCGGGAATTGAGGAGGAGATTAAGGATCTGAAT
GAACATTTTGCACGAGAAAGGCCACGGATGGAGCAGAAGTTGAGGGTATT
GCAGGCGGCATTGGAGAGAAGGAAGGAGGGGTTGAGTAGGGAGAAGAGAC
GGTATCGCCTTGATAAAGAGGGATGGGAGAATGAAGCGAGGCTCTTGGCG
GCTTCGGTAATGAAAGCGACGAAACTGGAGGAGAAGCTAAATGTGGAAAA
GAGGGCAGCTGCTAAGGAGGCGATAAGAGAGCGGGCGGAGGTGGAGAAGG
AAGAGGAGGATGAGGAGAAGGAGATACGTGGGGCAGAGGAGAGTGAAGGG
AGGGTAGAAGGGGGCGAAGAGGACGAGGAGGAAGATGACGAAAACTTGGA
GGAATTGGCGGATTTGATGTTTCAGCTGGAGTTGCTCATGTCCAAGGAGG
GACACTTGGAGGAATAG

protein sequence of NO06G02590.1

>NO06G02590.1-protein ID=NO06G02590.1-protein|Name=NO06G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MALETLQSLNHAIAQSKASYEHDVLKLQQRRALRDAGAAEVLSPLLQEGK
DTVRKMEEQERGMSEDVQSCLMMVVESLGEKAIILNEHHRLARLQKVVAA
RVRNFRTRVAEKGAMALEEEKARAGKEVEVEGERLKEELAGIEEEIKDLN
EHFARERPRMEQKLRVLQAALERRKEGLSREKRRYRLDKEGWENEARLLA
ASVMKATKLEEKLNVEKRAAAKEAIRERAEVEKEEEDEEKEIRGAEESEG
RVEGGEEDEEEDDENLEELADLMFQLELLMSKEGHLEE*

mRNA from alignment at chr6:727579..728445-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G02590.1 ID=NO06G02590.1|Name=NO06G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=867bp|location=Sequence derived from alignment at chr6:727579..728445- (Nannochloropsis oceanica)
ATGGCCTTGGAAACGCTGCAATCTCTTAACCACGCCATTGCCCAGAGCAA
GGCCTCCTACGAACACGACGTATTAAAACTCCAACAACGTCGGGCGTTGC
GTGACGCTGGGGCAGCGGAAGTGCTCTCTCCGTTGCTGCAAGAGGGGAAG
GATACGGTGCGAAAAATGGAGGAGCAAGAGAGGGGTATGTCGGAGGATGT
TCAAAGTTGCTTAATGATGGTTGTGGAGAGCTTGGGGGAGAAAGCTATTA
TTCTAAATGAACACCATCGCTTGGCACGTCTGCAGAAGGTGGTGGCTGCG
AGGGTGAGGAACTTCCGCACCCGTGTGGCGGAAAAGGGGGCGATGGCCCT
GGAGGAGGAAAAGGCGAGGGCAGGGAAGGAGGTGGAAGTAGAGGGGGAGA
GATTAAAGGAGGAATTGGCGGGAATTGAGGAGGAGATTAAGGATCTGAAT
GAACATTTTGCACGAGAAAGGCCACGGATGGAGCAGAAGTTGAGGGTATT
GCAGGCGGCATTGGAGAGAAGGAAGGAGGGGTTGAGTAGGGAGAAGAGAC
GGTATCGCCTTGATAAAGAGGGATGGGAGAATGAAGCGAGGCTCTTGGCG
GCTTCGGTAATGAAAGCGACGAAACTGGAGGAGAAGCTAAATGTGGAAAA
GAGGGCAGCTGCTAAGGAGGCGATAAGAGAGCGGGCGGAGGTGGAGAAGG
AAGAGGAGGATGAGGAGAAGGAGATACGTGGGGCAGAGGAGAGTGAAGGG
AGGGTAGAAGGGGGCGAAGAGGACGAGGAGGAAGATGACGAAAACTTGGA
GGAATTGGCGGATTTGATGTTTCAGCTGGAGTTGCTCATGTCCAAGGAGG
GACACTTGGAGGAATAG

Coding sequence (CDS) from alignment at chr6:727579..728445-

>NO06G02590.1 ID=NO06G02590.1|Name=NO06G02590.1|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr6:727579..728445- (Nannochloropsis oceanica)
ATGGCCTTGGAAACGCTGCAATCTCTTAACCACGCCATTGCCCAGAGCAA
GGCCTCCTACGAACACGACGTATTAAAACTCCAACAACGTCGGGCGTTGC
GTGACGCTGGGGCAGCGGAAGTGCTCTCTCCGTTGCTGCAAGAGGGGAAG
GATACGGTGCGAAAAATGGAGGAGCAAGAGAGGGGTATGTCGGAGGATGT
TCAAAGTTGCTTAATGATGGTTGTGGAGAGCTTGGGGGAGAAAGCTATTA
TTCTAAATGAACACCATCGCTTGGCACGTCTGCAGAAGGTGGTGGCTGCG
AGGGTGAGGAACTTCCGCACCCGTGTGGCGGAAAAGGGGGCGATGGCCCT
GGAGGAGGAAAAGGCGAGGGCAGGGAAGGAGGTGGAAGTAGAGGGGGAGA
GATTAAAGGAGGAATTGGCGGGAATTGAGGAGGAGATTAAGGATCTGAAT
GAACATTTTGCACGAGAAAGGCCACGGATGGAGCAGAAGTTGAGGGTATT
GCAGGCGGCATTGGAGAGAAGGAAGGAGGGGTTGAGTAGGGAGAAGAGAC
GGTATCGCCTTGATAAAGAGGGATGGGAGAATGAAGCGAGGCTCTTGGCG
GCTTCGGTAATGAAAGCGACGAAACTGGAGGAGAAGCTAAATGTGGAAAA
GAGGGCAGCTGCTAAGGAGGCGATAAGAGAGCGGGCGGAGGTGGAGAAGG
AAGAGGAGGATGAGGAGAAGGAGATACGTGGGGCAGAGGAGAGTGAAGGG
AGGGTAGAAGGGGGCGAAGAGGACGAGGAGGAAGATGACGAAAACTTGGA
GGAATTGGCGGATTTGATGTTTCAGCTGGAGTTGCTCATGTCCAAGGAGG
GACACTTGGAGGAATAG

Synonyms

Publications