NO06G02570.1, NO06G02570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02570.1
Unique NameNO06G02570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length676
Alignment locationchr6:720269..721027 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:720269..721027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02570.1 vs.
Match: EWM26273.1 (n-alpha-acetyltransferase auxiliary subunit [Nannochloropsis gaditana])

HSP 1 Score: 187.6 bits (475), Expect = 1.900e-44
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0 
Query:    1 MAATLETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH 97
            MAATLE LKDR+ICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLS+LKGD LKPVIH
Sbjct:   25 MAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120
The following BLAST results are available for this feature:
BLAST of NO06G02570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26273.11.900e-4495.83n-alpha-acetyltransferase auxiliary subunit [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02570NO06G02570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02570.1NO06G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02570.1.cds1NO06G02570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02570.1.cds2NO06G02570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02570.1 ID=NO06G02570.1|Name=NO06G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=676bp
CAACAGCAGCCACCTATTGAGCCAGTCAGATCGCGCGCCTGTGGAGGGGA
GTGATTAAAGCAAAGACAACTCGACACAACAAGCCCAGCCGTACAGCTGC
ATCATGGCGGCCACACTCGAGACCCTGAAAGACCGCATCATCTGCGTGAT
TACAAACGATGGACGCAACATTGTCGGCGTGCTCAAGGGCTTCGACCAAA
CCACCAACATCATCCTGCAAGAATGCCATGAGCGCGTCTTTTCCACCACC
GCGGGCGTAGAGCAAGTGCCCTTGGGCTTGTACATTGTGAGAGGGGACAA
CATTGCCGTCGTCGGCGAGATGGACGAGGAGGCGGATGCGGCGTTGGACT
TATCGACCCTCAAGGGCGACCCACTTAAGCCCGTCATACATTAGCAACTT
AGTGATTGAGAAAATCGTGTGTATGTGTGTGTGTGTGTGTATGTGTCCAT
AGGTGATAGTCGGCAAAAGCCACCTCAAATGTGTGCAGAAACTTTATGGA
TTGAAGCTCTTAACCAAAAGAACCAACAATCGCAACGTAATGCGAGACTA
AAAATATGTGTGCGAGGGTGTGTTGCGTGCTATCCGTTCCTTCTTTTTCT
GCCGTTCAGGACCGGCCTCGGCCCAAACACAACACAACGAAAAAGAAAAT
GGACAGAAATTGGTGATTCTACAGTA
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protein sequence of NO06G02570.1

>NO06G02570.1-protein ID=NO06G02570.1-protein|Name=NO06G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MAATLETLKDRIICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTA
GVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSTLKGDPLKPVIH*
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mRNA from alignment at chr6:720269..721027-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02570.1 ID=NO06G02570.1|Name=NO06G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=759bp|location=Sequence derived from alignment at chr6:720269..721027- (Nannochloropsis oceanica)
CAACAGCAGCCACCTATTGAGCCAGTCAGATCGCGCGCCTGTGGAGGGGA
GTGATTAAAGCAAAGACAACTCGACACAACAAGCCCAGCCGTACAGCTGC
ATCATGGCGGCCACACTCGAGACCCTGAAAGACCGTAAGTCCAAGAATTG
CAAAATTCTCAATAAAGCCACTATCCGACCATTCACCTCGCTCTTCACTT
CCACCTCGCCTTACCAGGCATCATCTGCGTGATTACAAACGATGGACGCA
ACATTGTCGGCGTGCTCAAGGGCTTCGACCAAACCACCAACATCATCCTG
CAAGAATGCCATGAGCGCGTCTTTTCCACCACCGCGGGCGTAGAGCAAGT
GCCCTTGGGCTTGTACATTGTGAGAGGGGACAACATTGCCGTCGTCGGCG
AGATGGACGAGGAGGCGGATGCGGCGTTGGACTTATCGACCCTCAAGGGC
GACCCACTTAAGCCCGTCATACATTAGCAACTTAGTGATTGAGAAAATCG
TGTGTATGTGTGTGTGTGTGTGTATGTGTCCATAGGTGATAGTCGGCAAA
AGCCACCTCAAATGTGTGCAGAAACTTTATGGATTGAAGCTCTTAACCAA
AAGAACCAACAATCGCAACGTAATGCGAGACTAAAAATATGTGTGCGAGG
GTGTGTTGCGTGCTATCCGTTCCTTCTTTTTCTGCCGTTCAGGACCGGCC
TCGGCCCAAACACAACACAACGAAAAAGAAAATGGACAGAAATTGGTGAT
TCTACAGTA
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Coding sequence (CDS) from alignment at chr6:720269..721027-

>NO06G02570.1 ID=NO06G02570.1|Name=NO06G02570.1|organism=Nannochloropsis oceanica|type=CDS|length=291bp|location=Sequence derived from alignment at chr6:720269..721027- (Nannochloropsis oceanica)
ATGGCGGCCACACTCGAGACCCTGAAAGACCGCATCATCTGCGTGATTAC
AAACGATGGACGCAACATTGTCGGCGTGCTCAAGGGCTTCGACCAAACCA
CCAACATCATCCTGCAAGAATGCCATGAGCGCGTCTTTTCCACCACCGCG
GGCGTAGAGCAAGTGCCCTTGGGCTTGTACATTGTGAGAGGGGACAACAT
TGCCGTCGTCGGCGAGATGGACGAGGAGGCGGATGCGGCGTTGGACTTAT
CGACCCTCAAGGGCGACCCACTTAAGCCCGTCATACATTAG
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Synonyms
Publications