NO06G02560.1, NO06G02560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02560.1
Unique NameNO06G02560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1508
Alignment locationchr6:718761..720268 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:718761..720268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G02560.1 vs.
Match: EWM26272.1 (proliferating cell nuclear antigen [Nannochloropsis gaditana])

HSP 1 Score: 486.5 bits (1251), Expect = 5.200e-134
Identity = 241/259 (93.05%), Postives = 251/259 (96.91%), Query Frame = 0 
Query:    1 MFEARLTEGNLLKKIIEAIKDLVQEANVDCSDTGLTMQAMDASHVSLCSLNMRSGGFDHFRCDRSISLGLNLSNLGKILKCAGNEDVVTLKAEDEPDTLTLMFEAPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSVEFQRIIRDLAVIGETCIISCTKEGVRFSVSGDLGKGNVTVRQSSAVDGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGPTVKLHMSPDVPIVVEYPMKDIGSISYFLAPKIDED 260
            MFEARLTEG+LLKKIIEAIKDLVQEANVDCS+ GLTMQAMDASHVSLCSLNMR GGFDH+RCDRSISLGLNL+NLGKILKCAGN+DVVTLKAEDEPDTLTLMFE+PNQERISDFELKLMDIETEHLGIPNEEYKCTISMPS EFQRI+RDLAVIGETCII+CTKEGV+FSVSGDLG GNVTVRQSSA DGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLG TVKLHMSPDVPIVVEYP+  IGSISYFLAPKIDED
Sbjct:    1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKIDED 259
The following BLAST results are available for this feature:
BLAST of NO06G02560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26272.15.200e-13493.05proliferating cell nuclear antigen [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02560NO06G02560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02560.1NO06G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02560.1.cds1NO06G02560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02560.1 ID=NO06G02560.1|Name=NO06G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1508bp
AAGAAAAGTGCCTTCCCCGCGCACACGGCCGACTTTATTTTGCCTTCTCG
TCCCTAAAGTTATCGCCCACACCAGGCTGCACGTCTATTTGTGCCGGAGC
GTCCAGTGTGTGCTGCCACACAGTCACCTAGTCTGGTACGGAAGGTTACC
GTATCGCCTCCAGCGAAGCTCCGCCTCTTTCTGCACCGCCGAAGCCTCCT
TCCTTTTCTGTGGCGTGATGCGTTTTCCACAACCGCAGGAAAGACACTTC
CCACGGCACATCCACTAAGATCGCGGCCACCTTGATTTGCAGTGCGTTAC
CCTAGTAGCCACAATCCAGCTGCGGAACAGGACGTGCCAAGCTGGCTCTC
GTATCAAGCCCGCGGAAAAGGCATCCCCTGCCCCTTTCTGTGCCTCACTT
TTCCCTCCCTTCCCCCGCACCTCACATTACAGTCAGCCCCCTCCTCACAC
CACCATGTTTGAAGCCCGGCTTACGGAGGGAAACCTCCTGAAGAAGATCA
TCGAGGCCATCAAGGACCTGGTCCAAGAAGCTAACGTGGACTGCTCCGAC
ACGGGACTGACCATGCAGGCTATGGATGCTTCCCACGTCTCCCTCTGCTC
CCTCAACATGCGCTCCGGCGGCTTTGACCACTTCAGGTGCGATCGCTCAA
TCTCCTTGGGTCTGAACTTAAGCAACCTCGGCAAGATCCTCAAGTGCGCA
GGGAACGAGGACGTAGTTACGCTCAAGGCGGAAGACGAGCCCGATACATT
GACCCTCATGTTCGAAGCCCCCAACCAAGAGCGCATCTCCGACTTCGAGC
TCAAACTGATGGACATTGAGACAGAGCACCTGGGCATTCCCAATGAGGAG
TACAAATGCACGATTTCCATGCCCTCCGTTGAGTTTCAACGCATTATTCG
CGACTTGGCCGTGATTGGCGAGACGTGCATCATCAGCTGCACCAAGGAAG
GAGTCCGCTTCTCAGTCTCAGGGGACCTGGGCAAGGGGAATGTAACGGTG
CGTCAATCATCGGCGGTGGACGGCGACGAGAAGGATCAGGTGAAGATCCA
GATGGAGGAGCCTGTCACGCTGAACTTTGCTTTGCGATACTTAGGTTTCT
TCACCAAGGCAACCCCCCTTGGCCCGACGGTGAAATTGCACATGTCCCCA
GATGTGCCCATCGTGGTGGAGTACCCGATGAAAGACATTGGTTCGATCTC
TTACTTCTTGGCGCCCAAGATCGATGAAGATTAACAGGGGTGCGGGGGAG
AGCGAAGGAAGGAGGGAGGGAAGGTGAGAAAGTAGCGGGGGAAAGCAGGA
AACGCAATTATTTTAGATGTTAAGAGTGCAGGAAAAGTAAGAAGAAAGGT
GTGTGTCCTGAATAGATGATGAACTGCATTGGGCAGGGGTTCCCTTGACG
AGAAAGGCCGTGAGTGTCCACGAGGAAGGAAGGGTGGGAGGGGAAGGGAG
AGAGGGACTGAAGAGAGCACCAAAGAATATAACACATACGTATCAAATGT
CTCATCAC
back to top

protein sequence of NO06G02560.1

>NO06G02560.1-protein ID=NO06G02560.1-protein|Name=NO06G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MFEARLTEGNLLKKIIEAIKDLVQEANVDCSDTGLTMQAMDASHVSLCSL
NMRSGGFDHFRCDRSISLGLNLSNLGKILKCAGNEDVVTLKAEDEPDTLT
LMFEAPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSVEFQRIIRD
LAVIGETCIISCTKEGVRFSVSGDLGKGNVTVRQSSAVDGDEKDQVKIQM
EEPVTLNFALRYLGFFTKATPLGPTVKLHMSPDVPIVVEYPMKDIGSISY
FLAPKIDED*
back to top

mRNA from alignment at chr6:718761..720268+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02560.1 ID=NO06G02560.1|Name=NO06G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1508bp|location=Sequence derived from alignment at chr6:718761..720268+ (Nannochloropsis oceanica)
AAGAAAAGTGCCTTCCCCGCGCACACGGCCGACTTTATTTTGCCTTCTCG
TCCCTAAAGTTATCGCCCACACCAGGCTGCACGTCTATTTGTGCCGGAGC
GTCCAGTGTGTGCTGCCACACAGTCACCTAGTCTGGTACGGAAGGTTACC
GTATCGCCTCCAGCGAAGCTCCGCCTCTTTCTGCACCGCCGAAGCCTCCT
TCCTTTTCTGTGGCGTGATGCGTTTTCCACAACCGCAGGAAAGACACTTC
CCACGGCACATCCACTAAGATCGCGGCCACCTTGATTTGCAGTGCGTTAC
CCTAGTAGCCACAATCCAGCTGCGGAACAGGACGTGCCAAGCTGGCTCTC
GTATCAAGCCCGCGGAAAAGGCATCCCCTGCCCCTTTCTGTGCCTCACTT
TTCCCTCCCTTCCCCCGCACCTCACATTACAGTCAGCCCCCTCCTCACAC
CACCATGTTTGAAGCCCGGCTTACGGAGGGAAACCTCCTGAAGAAGATCA
TCGAGGCCATCAAGGACCTGGTCCAAGAAGCTAACGTGGACTGCTCCGAC
ACGGGACTGACCATGCAGGCTATGGATGCTTCCCACGTCTCCCTCTGCTC
CCTCAACATGCGCTCCGGCGGCTTTGACCACTTCAGGTGCGATCGCTCAA
TCTCCTTGGGTCTGAACTTAAGCAACCTCGGCAAGATCCTCAAGTGCGCA
GGGAACGAGGACGTAGTTACGCTCAAGGCGGAAGACGAGCCCGATACATT
GACCCTCATGTTCGAAGCCCCCAACCAAGAGCGCATCTCCGACTTCGAGC
TCAAACTGATGGACATTGAGACAGAGCACCTGGGCATTCCCAATGAGGAG
TACAAATGCACGATTTCCATGCCCTCCGTTGAGTTTCAACGCATTATTCG
CGACTTGGCCGTGATTGGCGAGACGTGCATCATCAGCTGCACCAAGGAAG
GAGTCCGCTTCTCAGTCTCAGGGGACCTGGGCAAGGGGAATGTAACGGTG
CGTCAATCATCGGCGGTGGACGGCGACGAGAAGGATCAGGTGAAGATCCA
GATGGAGGAGCCTGTCACGCTGAACTTTGCTTTGCGATACTTAGGTTTCT
TCACCAAGGCAACCCCCCTTGGCCCGACGGTGAAATTGCACATGTCCCCA
GATGTGCCCATCGTGGTGGAGTACCCGATGAAAGACATTGGTTCGATCTC
TTACTTCTTGGCGCCCAAGATCGATGAAGATTAACAGGGGTGCGGGGGAG
AGCGAAGGAAGGAGGGAGGGAAGGTGAGAAAGTAGCGGGGGAAAGCAGGA
AACGCAATTATTTTAGATGTTAAGAGTGCAGGAAAAGTAAGAAGAAAGGT
GTGTGTCCTGAATAGATGATGAACTGCATTGGGCAGGGGTTCCCTTGACG
AGAAAGGCCGTGAGTGTCCACGAGGAAGGAAGGGTGGGAGGGGAAGGGAG
AGAGGGACTGAAGAGAGCACCAAAGAATATAACACATACGTATCAAATGT
CTCATCAC
back to top

Coding sequence (CDS) from alignment at chr6:718761..720268+

>NO06G02560.1 ID=NO06G02560.1|Name=NO06G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr6:718761..720268+ (Nannochloropsis oceanica)
ATGTTTGAAGCCCGGCTTACGGAGGGAAACCTCCTGAAGAAGATCATCGA
GGCCATCAAGGACCTGGTCCAAGAAGCTAACGTGGACTGCTCCGACACGG
GACTGACCATGCAGGCTATGGATGCTTCCCACGTCTCCCTCTGCTCCCTC
AACATGCGCTCCGGCGGCTTTGACCACTTCAGGTGCGATCGCTCAATCTC
CTTGGGTCTGAACTTAAGCAACCTCGGCAAGATCCTCAAGTGCGCAGGGA
ACGAGGACGTAGTTACGCTCAAGGCGGAAGACGAGCCCGATACATTGACC
CTCATGTTCGAAGCCCCCAACCAAGAGCGCATCTCCGACTTCGAGCTCAA
ACTGATGGACATTGAGACAGAGCACCTGGGCATTCCCAATGAGGAGTACA
AATGCACGATTTCCATGCCCTCCGTTGAGTTTCAACGCATTATTCGCGAC
TTGGCCGTGATTGGCGAGACGTGCATCATCAGCTGCACCAAGGAAGGAGT
CCGCTTCTCAGTCTCAGGGGACCTGGGCAAGGGGAATGTAACGGTGCGTC
AATCATCGGCGGTGGACGGCGACGAGAAGGATCAGGTGAAGATCCAGATG
GAGGAGCCTGTCACGCTGAACTTTGCTTTGCGATACTTAGGTTTCTTCAC
CAAGGCAACCCCCCTTGGCCCGACGGTGAAATTGCACATGTCCCCAGATG
TGCCCATCGTGGTGGAGTACCCGATGAAAGACATTGGTTCGATCTCTTAC
TTCTTGGCGCCCAAGATCGATGAAGATTAA
back to top
Synonyms
Publications