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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:694087..696459 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02450.1 vs.
Match: EWM26274.1 (catalyzes the conversion of homocitrate to which is a step in the lys [Nannochloropsis gaditana]) HSP 1 Score: 890.2 bits (2299), Expect = 4.700e-255 Identity = 492/790 (62.28%), Postives = 571/790 (72.28%), Query Frame = 0
Query: 10 RGGRSPNLLPARFASFQASASSSPLPAGPQNLVEKIVQRHALGIAAQHRVHAGDFIAIKPAHVMTHDNTWAVMAKFATLTQHPDERSSSNGSSDSSSSRSSRGCSSNIAGSSSSLCIADPRQPVLALDHNVQDRSDKNLARYAAIEAFAKQHGLDFFPAGRGIGHQVLCEEGYVQPGWMVVASDSHSNMYGALGALGTPVVRTDAAAIWATGTTWWQVPPVARVQLEGKLPRGVTGKDVILSLCGLFAEDHVLNHAVEFTGEGVECLGMEDRMTISNMTTEWGALAAVFPIDAVTVAWVQARAARLRAKYG------------RSDGVPVPPRVRTCDRIAQELAAQGTSSQGWEASDQGAYYAQTISLDLSRLCSLAAGPNAIKLVTPVRVLETQRVAIQKAYIVSCVNSRVSDLAAAAAVLRGQHIAPGVELYIAAASSEVEKESKARGDWQALVAAGAIELPSGCGPCVGLGRGLLKDGEVAISATNRNFRGRMGSRSAQAYLASPNVVAQSAMKGYIACVGGSERKEDEEGWRMIVSGMQ--RHHHHSKESGSSNCSSSSSDMAINSRA---TTTIIKGFPPLLRGPLLLTLHPNIDTDGIYAGKHCYEDLNTQAQASVAMENYDPSFASLVQKGDILVTGPNFGCGSSREQAATALRACGIQVILATSVNETFRRNALNNALVVLEVPALVSELNRRFSLSPSAGKGGKEQHQQQSLPTSLRLADYRIEVDFVHSVVRLVSNKEQRHKAKSVEENEFPFTSMGPVVQEIVVAGGLEGWVRRLLQK 783
R GRS LL A+ S A P NLVEKI +RHA+ A + + AG+ I+IKP HVMTHDNT AVM KF +L S S GS+ I+ + IAD RQPVLALDHNVQD S KNLARYAAIE FA+QHGLDFFPAGRGIGHQVLCEEGYVQPGWMVVASDSHSNMYGALGALGTPVVRTDAAA+WATG TWW+VPPVARV+L G L +GV GKDVIL+LCGLF +D VLNHAVEF G+G+ CLGMEDRMTISNMTTEWGAL+ VFP D VT+ W+Q RA +LR KYG + VPPRV +R+A +AA WE +D+ A YA+T++LDLSRL L AGPNAIK +TP R LE +RV + KAYIVSCVNSRVSDL +AA +LR + +A GVELYIAAASSEVE+ESK RGDW ALVAAGA+ELPSGCGPCVGLGRGLL+DGEVAISATNRNF+GRMGSR AQAYLASP VVAQSA+KGYIA G + +++ W + +Q R S E + + RA + T+I GFPP+LRG +LLT PNIDTDGIYAG+HCYED++ +AQA+VAMENYDP+FASLVQ GD+LVTGPNFGCGSSREQAATALRACGI+VI+ SVNETFRRNALNNAL++LE PALV+++ RR S S G H S+RL DY +EVDFV S+++LVS K E PF +G V QEIVVAGGLEGWVR+ LQ+
Sbjct: 10 RQGRSLQLLQQNLAACNQPRCSFAAAASPLNLVEKIARRHAVD-ADKKDISAGNIISIKPKHVMTHDNTLAVMTKFVSL-------SHSEGSA--------------ISPDNPFPSIADQRQPVLALDHNVQDSSPKNLARYAAIENFARQHGLDFFPAGRGIGHQVLCEEGYVQPGWMVVASDSHSNMYGALGALGTPVVRTDAAALWATGRTWWRVPPVARVELTGVLRQGVGGKDVILALCGLFRKDEVLNHAVEFAGDGLSCLGMEDRMTISNMTTEWGALSGVFPADGVTLKWLQGRAGKLREKYGAVGVDMHEKGGSMAPPASVPPRVLASERVAHAMAAGEPGM--WERTDEKAQYAKTLALDLSRLVPLVAGPNAIKSITPARSLEERRVQVHKAYIVSCVNSRVSDLTSAADILRDRTVASGVELYIAAASSEVEEESKKRGDWSALVAAGAVELPSGCGPCVGLGRGLLRDGEVAISATNRNFKGRMGSRHAQAYLASPAVVAQSALKGYIASPGRVDSGQEDSLWEVTAREIQTLRGKDASPEGPGQRDRAREDRPGVAPRAADTSHTVISGFPPILRGAVLLTPSPNIDTDGIYAGRHCYEDMDARAQANVAMENYDPAFASLVQPGDVLVTGPNFGCGSSREQAATALRACGIRVIVTASVNETFRRNALNNALLILEAPALVADIERRLSQS----NFGSGMHM-----PSIRLPDYSLEVDFVASILKLVSRGGDDTKK---EIGGCPFDPVGRVAQEIVVAGGLEGWVRQQLQE 763
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02450.1 ID=NO06G02450.1|Name=NO06G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2373bp
ATGTCGCTCCTTCTATGGCTGCCGCGGCGGGGAGGGAGGTCGCCCAACCT
GCTGCCGGCGCGTTTTGCCTCCTTCCAAGCTTCAGCCTCTTCCTCTCCGC
TTCCTGCAGGCCCCCAGAACTTGGTCGAGAAAATTGTACAGCGCCACGCC
CTGGGCATCGCCGCGCAGCATCGCGTGCATGCAGGGGACTTTATTGCAAT
CAAGCCAGCGCATGTCATGACGCACGACAATACTTGGGCGGTCATGGCAA
AATTTGCCACTCTCACCCAACACCCCGACGAACGCAGCAGCAGCAATGGT
AGCAGCGACAGTAGCAGCAGCAGGAGCAGCAGGGGCTGCAGCAGCAACAT
TGCTGGCAGCTCTTCTTCTCTTTGTATAGCTGACCCACGTCAGCCTGTGC
TGGCCCTGGATCACAATGTGCAAGATCGCTCGGATAAAAACCTAGCCCGG
TACGCTGCCATAGAGGCGTTTGCAAAGCAGCATGGTCTGGACTTTTTCCC
CGCAGGGCGAGGCATCGGCCACCAGGTCTTGTGCGAGGAGGGGTACGTGC
AGCCAGGCTGGATGGTTGTAGCAAGCGACAGTCATTCCAACATGTACGGG
GCCCTAGGTGCGCTAGGTACACCAGTGGTGCGGACGGACGCGGCAGCGAT
TTGGGCGACAGGAACGACGTGGTGGCAAGTTCCACCGGTGGCACGTGTTC
AGTTGGAAGGGAAGCTTCCCAGGGGGGTGACGGGCAAAGATGTGATTTTG
AGTTTGTGTGGTTTGTTTGCAGAGGATCATGTGCTGAATCATGCGGTGGA
GTTTACGGGGGAGGGGGTGGAGTGCTTGGGGATGGAGGATCGGATGACGA
TAAGTAACATGACGACAGAGTGGGGGGCATTGGCGGCGGTGTTCCCCATA
GATGCAGTGACAGTGGCATGGGTACAAGCAAGGGCTGCGAGGCTTCGAGC
AAAGTATGGTAGAAGTGATGGAGTTCCGGTACCACCGCGGGTTCGGACTT
GTGATCGCATCGCTCAAGAGCTAGCGGCACAAGGAACTTCCTCCCAGGGT
TGGGAAGCATCAGATCAAGGGGCATACTATGCTCAAACCATTTCCCTCGA
TCTCTCTCGCCTTTGCTCCCTGGCAGCTGGACCGAACGCTATCAAATTGG
TTACGCCCGTCAGGGTGCTGGAGACACAGCGGGTGGCGATTCAGAAGGCA
TATATCGTCTCGTGTGTCAACAGCCGAGTCAGTGATCTGGCAGCAGCTGC
AGCCGTGCTACGCGGACAACATATCGCGCCTGGAGTCGAGCTTTATATAG
CTGCAGCGTCCAGTGAGGTGGAGAAAGAGAGCAAGGCCAGGGGAGACTGG
CAGGCGTTGGTAGCTGCGGGAGCTATTGAATTGCCGTCCGGGTGTGGTCC
TTGCGTGGGGCTGGGGAGGGGGCTGTTGAAAGACGGAGAAGTAGCTATTT
CGGCGACAAATCGGAACTTCAGAGGCAGGATGGGTTCGAGAAGCGCGCAG
GCATATTTGGCATCGCCTAACGTGGTGGCTCAGTCAGCGATGAAGGGGTA
TATCGCGTGCGTAGGTGGGAGCGAGCGGAAGGAAGATGAGGAGGGGTGGC
GGATGATAGTGTCGGGGATGCAGCGGCATCATCATCATTCTAAAGAAAGC
GGCAGCAGCAATTGCAGCAGCAGCAGCAGTGATATGGCCATAAACAGTCG
TGCTACCACCACCATCATCAAGGGCTTTCCTCCCTTGCTTCGAGGCCCCC
TGTTACTGACCCTCCATCCCAATATTGACACCGATGGGATCTATGCCGGC
AAACACTGCTATGAAGACCTCAATACGCAAGCTCAAGCATCAGTAGCCAT
GGAAAATTACGACCCTTCCTTCGCCTCATTGGTCCAAAAGGGAGATATAT
TAGTCACAGGGCCCAACTTCGGGTGTGGCTCATCGCGAGAGCAAGCAGCG
ACGGCGCTAAGGGCGTGCGGGATTCAGGTGATATTGGCAACGAGTGTAAA
CGAGACATTTAGACGGAACGCGTTGAACAATGCCCTGGTGGTGTTGGAGG
TGCCGGCACTGGTGTCGGAGCTGAATCGTCGGTTTTCTCTTTCTCCTTCT
GCTGGCAAGGGAGGGAAGGAGCAGCACCAGCAGCAGTCGTTGCCGACGAG
TTTGCGTTTGGCTGATTATCGCATAGAAGTGGACTTTGTGCATTCTGTAG
TAAGGTTGGTGTCAAACAAGGAGCAGCGACACAAGGCGAAGAGCGTGGAG
GAAAATGAGTTCCCCTTCACTTCCATGGGGCCTGTGGTGCAAGAGATTGT
GGTTGCGGGTGGGTTGGAGGGGTGGGTGCGACGGTTACTGCAAAAGCAGC
CGCCGCCGGCACGGACTAAGTAG back to topprotein sequence of NO06G02450.1 >NO06G02450.1-protein ID=NO06G02450.1-protein|Name=NO06G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=791bp
MSLLLWLPRRGGRSPNLLPARFASFQASASSSPLPAGPQNLVEKIVQRHA
LGIAAQHRVHAGDFIAIKPAHVMTHDNTWAVMAKFATLTQHPDERSSSNG
SSDSSSSRSSRGCSSNIAGSSSSLCIADPRQPVLALDHNVQDRSDKNLAR
YAAIEAFAKQHGLDFFPAGRGIGHQVLCEEGYVQPGWMVVASDSHSNMYG
ALGALGTPVVRTDAAAIWATGTTWWQVPPVARVQLEGKLPRGVTGKDVIL
SLCGLFAEDHVLNHAVEFTGEGVECLGMEDRMTISNMTTEWGALAAVFPI
DAVTVAWVQARAARLRAKYGRSDGVPVPPRVRTCDRIAQELAAQGTSSQG
WEASDQGAYYAQTISLDLSRLCSLAAGPNAIKLVTPVRVLETQRVAIQKA
YIVSCVNSRVSDLAAAAAVLRGQHIAPGVELYIAAASSEVEKESKARGDW
QALVAAGAIELPSGCGPCVGLGRGLLKDGEVAISATNRNFRGRMGSRSAQ
AYLASPNVVAQSAMKGYIACVGGSERKEDEEGWRMIVSGMQRHHHHSKES
GSSNCSSSSSDMAINSRATTTIIKGFPPLLRGPLLLTLHPNIDTDGIYAG
KHCYEDLNTQAQASVAMENYDPSFASLVQKGDILVTGPNFGCGSSREQAA
TALRACGIQVILATSVNETFRRNALNNALVVLEVPALVSELNRRFSLSPS
AGKGGKEQHQQQSLPTSLRLADYRIEVDFVHSVVRLVSNKEQRHKAKSVE
ENEFPFTSMGPVVQEIVVAGGLEGWVRRLLQKQPPPARTK* back to topmRNA from alignment at chr6:694087..696459- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02450.1 ID=NO06G02450.1|Name=NO06G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2373bp|location=Sequence derived from alignment at chr6:694087..696459- (Nannochloropsis oceanica)
ATGTCGCTCCTTCTATGGCTGCCGCGGCGGGGAGGGAGGTCGCCCAACCT
GCTGCCGGCGCGTTTTGCCTCCTTCCAAGCTTCAGCCTCTTCCTCTCCGC
TTCCTGCAGGCCCCCAGAACTTGGTCGAGAAAATTGTACAGCGCCACGCC
CTGGGCATCGCCGCGCAGCATCGCGTGCATGCAGGGGACTTTATTGCAAT
CAAGCCAGCGCATGTCATGACGCACGACAATACTTGGGCGGTCATGGCAA
AATTTGCCACTCTCACCCAACACCCCGACGAACGCAGCAGCAGCAATGGT
AGCAGCGACAGTAGCAGCAGCAGGAGCAGCAGGGGCTGCAGCAGCAACAT
TGCTGGCAGCTCTTCTTCTCTTTGTATAGCTGACCCACGTCAGCCTGTGC
TGGCCCTGGATCACAATGTGCAAGATCGCTCGGATAAAAACCTAGCCCGG
TACGCTGCCATAGAGGCGTTTGCAAAGCAGCATGGTCTGGACTTTTTCCC
CGCAGGGCGAGGCATCGGCCACCAGGTCTTGTGCGAGGAGGGGTACGTGC
AGCCAGGCTGGATGGTTGTAGCAAGCGACAGTCATTCCAACATGTACGGG
GCCCTAGGTGCGCTAGGTACACCAGTGGTGCGGACGGACGCGGCAGCGAT
TTGGGCGACAGGAACGACGTGGTGGCAAGTTCCACCGGTGGCACGTGTTC
AGTTGGAAGGGAAGCTTCCCAGGGGGGTGACGGGCAAAGATGTGATTTTG
AGTTTGTGTGGTTTGTTTGCAGAGGATCATGTGCTGAATCATGCGGTGGA
GTTTACGGGGGAGGGGGTGGAGTGCTTGGGGATGGAGGATCGGATGACGA
TAAGTAACATGACGACAGAGTGGGGGGCATTGGCGGCGGTGTTCCCCATA
GATGCAGTGACAGTGGCATGGGTACAAGCAAGGGCTGCGAGGCTTCGAGC
AAAGTATGGTAGAAGTGATGGAGTTCCGGTACCACCGCGGGTTCGGACTT
GTGATCGCATCGCTCAAGAGCTAGCGGCACAAGGAACTTCCTCCCAGGGT
TGGGAAGCATCAGATCAAGGGGCATACTATGCTCAAACCATTTCCCTCGA
TCTCTCTCGCCTTTGCTCCCTGGCAGCTGGACCGAACGCTATCAAATTGG
TTACGCCCGTCAGGGTGCTGGAGACACAGCGGGTGGCGATTCAGAAGGCA
TATATCGTCTCGTGTGTCAACAGCCGAGTCAGTGATCTGGCAGCAGCTGC
AGCCGTGCTACGCGGACAACATATCGCGCCTGGAGTCGAGCTTTATATAG
CTGCAGCGTCCAGTGAGGTGGAGAAAGAGAGCAAGGCCAGGGGAGACTGG
CAGGCGTTGGTAGCTGCGGGAGCTATTGAATTGCCGTCCGGGTGTGGTCC
TTGCGTGGGGCTGGGGAGGGGGCTGTTGAAAGACGGAGAAGTAGCTATTT
CGGCGACAAATCGGAACTTCAGAGGCAGGATGGGTTCGAGAAGCGCGCAG
GCATATTTGGCATCGCCTAACGTGGTGGCTCAGTCAGCGATGAAGGGGTA
TATCGCGTGCGTAGGTGGGAGCGAGCGGAAGGAAGATGAGGAGGGGTGGC
GGATGATAGTGTCGGGGATGCAGCGGCATCATCATCATTCTAAAGAAAGC
GGCAGCAGCAATTGCAGCAGCAGCAGCAGTGATATGGCCATAAACAGTCG
TGCTACCACCACCATCATCAAGGGCTTTCCTCCCTTGCTTCGAGGCCCCC
TGTTACTGACCCTCCATCCCAATATTGACACCGATGGGATCTATGCCGGC
AAACACTGCTATGAAGACCTCAATACGCAAGCTCAAGCATCAGTAGCCAT
GGAAAATTACGACCCTTCCTTCGCCTCATTGGTCCAAAAGGGAGATATAT
TAGTCACAGGGCCCAACTTCGGGTGTGGCTCATCGCGAGAGCAAGCAGCG
ACGGCGCTAAGGGCGTGCGGGATTCAGGTGATATTGGCAACGAGTGTAAA
CGAGACATTTAGACGGAACGCGTTGAACAATGCCCTGGTGGTGTTGGAGG
TGCCGGCACTGGTGTCGGAGCTGAATCGTCGGTTTTCTCTTTCTCCTTCT
GCTGGCAAGGGAGGGAAGGAGCAGCACCAGCAGCAGTCGTTGCCGACGAG
TTTGCGTTTGGCTGATTATCGCATAGAAGTGGACTTTGTGCATTCTGTAG
TAAGGTTGGTGTCAAACAAGGAGCAGCGACACAAGGCGAAGAGCGTGGAG
GAAAATGAGTTCCCCTTCACTTCCATGGGGCCTGTGGTGCAAGAGATTGT
GGTTGCGGGTGGGTTGGAGGGGTGGGTGCGACGGTTACTGCAAAAGCAGC
CGCCGCCGGCACGGACTAAGTAG back to topCoding sequence (CDS) from alignment at chr6:694087..696459- >NO06G02450.1 ID=NO06G02450.1|Name=NO06G02450.1|organism=Nannochloropsis oceanica|type=CDS|length=2373bp|location=Sequence derived from alignment at chr6:694087..696459- (Nannochloropsis oceanica)
ATGTCGCTCCTTCTATGGCTGCCGCGGCGGGGAGGGAGGTCGCCCAACCT
GCTGCCGGCGCGTTTTGCCTCCTTCCAAGCTTCAGCCTCTTCCTCTCCGC
TTCCTGCAGGCCCCCAGAACTTGGTCGAGAAAATTGTACAGCGCCACGCC
CTGGGCATCGCCGCGCAGCATCGCGTGCATGCAGGGGACTTTATTGCAAT
CAAGCCAGCGCATGTCATGACGCACGACAATACTTGGGCGGTCATGGCAA
AATTTGCCACTCTCACCCAACACCCCGACGAACGCAGCAGCAGCAATGGT
AGCAGCGACAGTAGCAGCAGCAGGAGCAGCAGGGGCTGCAGCAGCAACAT
TGCTGGCAGCTCTTCTTCTCTTTGTATAGCTGACCCACGTCAGCCTGTGC
TGGCCCTGGATCACAATGTGCAAGATCGCTCGGATAAAAACCTAGCCCGG
TACGCTGCCATAGAGGCGTTTGCAAAGCAGCATGGTCTGGACTTTTTCCC
CGCAGGGCGAGGCATCGGCCACCAGGTCTTGTGCGAGGAGGGGTACGTGC
AGCCAGGCTGGATGGTTGTAGCAAGCGACAGTCATTCCAACATGTACGGG
GCCCTAGGTGCGCTAGGTACACCAGTGGTGCGGACGGACGCGGCAGCGAT
TTGGGCGACAGGAACGACGTGGTGGCAAGTTCCACCGGTGGCACGTGTTC
AGTTGGAAGGGAAGCTTCCCAGGGGGGTGACGGGCAAAGATGTGATTTTG
AGTTTGTGTGGTTTGTTTGCAGAGGATCATGTGCTGAATCATGCGGTGGA
GTTTACGGGGGAGGGGGTGGAGTGCTTGGGGATGGAGGATCGGATGACGA
TAAGTAACATGACGACAGAGTGGGGGGCATTGGCGGCGGTGTTCCCCATA
GATGCAGTGACAGTGGCATGGGTACAAGCAAGGGCTGCGAGGCTTCGAGC
AAAGTATGGTAGAAGTGATGGAGTTCCGGTACCACCGCGGGTTCGGACTT
GTGATCGCATCGCTCAAGAGCTAGCGGCACAAGGAACTTCCTCCCAGGGT
TGGGAAGCATCAGATCAAGGGGCATACTATGCTCAAACCATTTCCCTCGA
TCTCTCTCGCCTTTGCTCCCTGGCAGCTGGACCGAACGCTATCAAATTGG
TTACGCCCGTCAGGGTGCTGGAGACACAGCGGGTGGCGATTCAGAAGGCA
TATATCGTCTCGTGTGTCAACAGCCGAGTCAGTGATCTGGCAGCAGCTGC
AGCCGTGCTACGCGGACAACATATCGCGCCTGGAGTCGAGCTTTATATAG
CTGCAGCGTCCAGTGAGGTGGAGAAAGAGAGCAAGGCCAGGGGAGACTGG
CAGGCGTTGGTAGCTGCGGGAGCTATTGAATTGCCGTCCGGGTGTGGTCC
TTGCGTGGGGCTGGGGAGGGGGCTGTTGAAAGACGGAGAAGTAGCTATTT
CGGCGACAAATCGGAACTTCAGAGGCAGGATGGGTTCGAGAAGCGCGCAG
GCATATTTGGCATCGCCTAACGTGGTGGCTCAGTCAGCGATGAAGGGGTA
TATCGCGTGCGTAGGTGGGAGCGAGCGGAAGGAAGATGAGGAGGGGTGGC
GGATGATAGTGTCGGGGATGCAGCGGCATCATCATCATTCTAAAGAAAGC
GGCAGCAGCAATTGCAGCAGCAGCAGCAGTGATATGGCCATAAACAGTCG
TGCTACCACCACCATCATCAAGGGCTTTCCTCCCTTGCTTCGAGGCCCCC
TGTTACTGACCCTCCATCCCAATATTGACACCGATGGGATCTATGCCGGC
AAACACTGCTATGAAGACCTCAATACGCAAGCTCAAGCATCAGTAGCCAT
GGAAAATTACGACCCTTCCTTCGCCTCATTGGTCCAAAAGGGAGATATAT
TAGTCACAGGGCCCAACTTCGGGTGTGGCTCATCGCGAGAGCAAGCAGCG
ACGGCGCTAAGGGCGTGCGGGATTCAGGTGATATTGGCAACGAGTGTAAA
CGAGACATTTAGACGGAACGCGTTGAACAATGCCCTGGTGGTGTTGGAGG
TGCCGGCACTGGTGTCGGAGCTGAATCGTCGGTTTTCTCTTTCTCCTTCT
GCTGGCAAGGGAGGGAAGGAGCAGCACCAGCAGCAGTCGTTGCCGACGAG
TTTGCGTTTGGCTGATTATCGCATAGAAGTGGACTTTGTGCATTCTGTAG
TAAGGTTGGTGTCAAACAAGGAGCAGCGACACAAGGCGAAGAGCGTGGAG
GAAAATGAGTTCCCCTTCACTTCCATGGGGCCTGTGGTGCAAGAGATTGT
GGTTGCGGGTGGGTTGGAGGGGTGGGTGCGACGGTTACTGCAAAAGCAGC
CGCCGCCGGCACGGACTAAGTAG back to top
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