NO06G02360.1, NO06G02360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02360.1
Unique NameNO06G02360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1852
Alignment locationchr6:678328..680516 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:678328..680516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G02360.1 vs.
Match: OQR80949.1 (hypothetical protein ACHHYP_16974 [Achlya hypogyna])

HSP 1 Score: 89.0 bits (219), Expect = 1.200e-14
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 0 
Query:   56 SLAREERMRTLLTEHFKPTNLLIQDVSGGCGAMYNMEVESELFKGKTLVAQHRMVNQVLAKEISEMHGLSLKTRAP 132
            S A EE+M   L +    T++ + D+SGGCG+MY +EV S  F+GK +VAQHR+VNQVL +EI+ MHGL+LKT  P
Sbjct:   15 SSAAEEKMAVALRQELSATHVKVDDISGGCGSMYKIEVASPTFEGKNVVAQHRLVNQVLKEEIAGMHGLTLKTYTP 90
The following BLAST results are available for this feature:
BLAST of NO06G02360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR80949.11.200e-1453.95hypothetical protein ACHHYP_16974 [Achlya hypogyna... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02360NO06G02360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02360.1NO06G02360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02360.1.cds1NO06G02360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02360.1.cds2NO06G02360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02360.1.cds3NO06G02360.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02360.1 ID=NO06G02360.1|Name=NO06G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp
TTTCCTGAGTTACCCCCCTCTATTGCACCGTCCATTCCTTTAAAGTCATT
GTTAATCATTGTACCTACTTTAGTAATACACTATTTATCCTTCTAACTCC
TCCCCCCCCTCATCCTCCGTCTCCTTATCCTCCTCGTCTTCTTCTTCGCG
TTGTTCTTCATCTGTACCATCCTACGGTCGTTGTCGTCGCTCCATTCTGT
AAGGCAAGCTTCTATAATTACCATATATGATCTTACCTGTCACACAATCT
GTTCCGCGGTCGTTCACACACAACATTTCCCTCGTCAACAGCAAATCATC
CTCAATCTTCAACTGAATACCCGCATCTCTCTGCGACTGAACCAAACAAA
AACCGTCGCGCATCACCCCTCGAAAACTCACCCCATCATCTTCTTCGTCA
CTTGTCTTAAAGTTGGAGACGCTCCAAATAACGCTACAACCTTCCAATTC
CTCCACCACCTCTGCCAGCTCTACCTGTGTCTGAGGCAACAAATTCAAGT
CATATTTATTCTGCCTCATCATACCCTCGAATTCCGGGGTGAATCGATGT
AGCCGCATTTCCAGAAAAGGCGGAGGAGGTAAAAAAAATGATGCCCCGCA
CTCCTCATCTTCATCGTCGTCGGCGGCCGGAGGGGGAGGGTGGAAGCTGT
AGACACGGCAGCGGAAGACAGCCTCGGGTCGGCCATCAAAATAGTAGGTG
GCGCCCAAGAAAAATTGCGCATCACCACCAAAACTTCCTGCGGGTAGATC
TAGAGGCGTCAAGATGCAATGAATCTGTTCATGTCCACCGGCAGGTCCCG
CCTCTATGCCTTGTGCTCGCTCCGACACCACCTGCGCCGCGTTGTCGAAC
TCGCCTTGGAAGTACAAGCGGAATAAAGGAAGAGAGCCATTATCATCGTC
AAAGCATTCCGCCCCGGCTTGAGCACGCCATAGAAACGCGCGTTGTCTTG
GTGAAAAGTACCCGCTGATCGGGAAGGCTTGGGATATGGGTGATGGTCCC
AACAGGAGGAGGAGCATCAGGAGACTTGCGGGAGGCAGGAGGTTGAAGCG
AGGCATGGCTCCGTTGTGCGATGGAAGCCCCTAGTGATGCAGCAACCAAG
GTTATTGTATGTCTTTATCTTTCCTGTTGTTATGGTGGTGGATTTGCGAG
CTTAAATAGTGAGAACATCAGTGAGAGGTGTTCAAAGAACGACATTTGCC
GCTCATGATGTGTCGGTGCCGTTGCTTGCTTGCCTCCTTCATTCCCATCC
TCACAACCACTTCACACGCAAAAACATGCAGAGAGTACTACGATAGCCAT
GCGGCGCGCTGTTGGCACCATATTGGTAGACGTCTCTGCCTCTGCGACCA
GAAGACCTGCGAATGCTACAGTAGCTATCTCCTCCCTTGGCCGACCTCTC
TACCCAACTACATCTCGCTTCCGGCGGTCTTTGGCCTCTGATGTCGACGG
CAACAGTGCCGAGTCCCTGGCTCGGGAGGAACGTATGCGTACATTACTAA
CAGAGCACTTCAAGCCGACAAATCTCCTGATTCAGGACGTCTCCGGCGGG
TGCGGAGCGATGTACAACATGGAAGTTGAGTCAGAGTTGTTCAAGGGCAA
GACGTTAGTGGCGCAGCACAGGATGGTCAATCAGGTACTGGCGAAGGAGA
TTTCCGAGATGCACGGTTTGTCGCTTAAAACACGCGCGCCCAAGAAGCAA
TAGAATCGGAGGGTAACAACAACTGGGGAAATGGGAAAAGTAAATAGGGG
CAAACGAATGGGATCACGCACACATATGACAAGACCGACATGGCCGACGA
GAAGGAAGAGAAGGAAGGATTGAGGTGATATCGATGGCAATGATAATGGT
GG
back to top

protein sequence of NO06G02360.1

>NO06G02360.1-protein ID=NO06G02360.1-protein|Name=NO06G02360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MRRAVGTILVDVSASATRRPANATVAISSLGRPLYPTTSRFRRSLASDVD
GNSAESLAREERMRTLLTEHFKPTNLLIQDVSGGCGAMYNMEVESELFKG
KTLVAQHRMVNQVLAKEISEMHGLSLKTRAPKKQ*
back to top

mRNA from alignment at chr6:678328..680516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02360.1 ID=NO06G02360.1|Name=NO06G02360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2189bp|location=Sequence derived from alignment at chr6:678328..680516- (Nannochloropsis oceanica)
TTTCCTGAGTTACCCCCCTCTATTGCACCGTCCATTCCTTTAAAGTCATT
GTTAATCATTGTACCTACTTTAGTAATACACTATTTATCCTTCTAACTCC
TCCCCCCCCTCATCCTCCGTCTCCTTATCCTCCTCGTCTTCTTCTTCGCG
TTGTTCTTCATCTGTACCATCCTACGGTCGTTGTCGTCGCTCCATTCTGT
AAGGCAAGCTTCTATAATTACCATATATGATCTTACCTGTCACACAATCT
GTTCCGCGGTCGTTCACACACAACATTTCCCTCGTCAACAGCAAATCATC
CTCAATCTTCAACTGAATACCCGCATCTCTCTGCGACTGAACCAAACAAA
AACCGTCGCGCATCACCCCTCGAAAACTCACCCCATCATCTTCTTCGTCA
CTTGTCTTAAAGTTGGAGACGCTCCAAATAACGCTACAACCTTCCAATTC
CTCCACCACCTCTGCCAGCTCTACCTGTGTCTGAGGCAACAAATTCAAGT
CATATTTATTCTGCCTCATCATACCCTCGAATTCCGGGGTGAATCGATGT
AGCCGCATTTCCAGAAAAGGCGGAGGAGGTAAAAAAAATGATGCCCCGCA
CTCCTCATCTTCATCGTCGTCGGCGGCCGGAGGGGGAGGGTGGAAGCTGT
AGACACGGCAGCGGAAGACAGCCTCGGGTCGGCCATCAAAATAGTAGGTG
GCGCCCAAGAAAAATTGCGCATCACCACCAAAACTTCCTGCGGGTAGATC
TAGAGGCGTCAAGATGCAATGAATCTGTTCATGTCCACCGGCAGGTCCCG
CCTCTATGCCTTGTGCTCGCTCCGACACCACCTGCGCCGCGTTGTCGAAC
TCGCCTTGGAAGTACAAGCGGAATAAAGGAAGAGAGCCATTATCATCGTC
AAAGCATTCCGCCCCGGCTTGAGCACGCCATAGAAACGCGCGTTGTCTTG
GTGAAAAGTACCCGCTGATCGGGAAGGCTTGGGATATGGGTGATGGTCCC
AACAGGAGGAGGAGCATCAGGAGACTTGCGGGAGGCAGGAGGTTGAAGCG
AGGCATGGCTCCGTTGTGCGATGGAAGCCCCTAGTGATGCAGCAACCAAG
GTTATTGTATGTCTTTATCTTTCCTGTTGTTATGGTGGTGGATTTGCGAG
CTTAAATAGTGAGAACATCAGTGAGAGGTGTTCAAAGAACGACATTTGCC
GCTCATGATGTGTCGGTGCCGTTGCTTGCTTGCCTCCTTCATTCCCATCC
TCACAACCACTTCACACGCAAAAACATGCAGAGAGTACTACGATAGCCAT
GCGGCGCGCTGTTGGCACCATATTGGTAGACGTCTCTGCCTCTGCGACCA
GAAGACCTGCGAATGCTACAGTAGCTATCTCCTCCCTTGGCCGACCTCTC
TACCCAACTACATCTCGCTTCCGGCGGTCTTTGGCCTCTGATGTCGACGG
CAACAGTGCCGAGTCCCTGGCTCGGGAGGAACGTATGCGTACATTACTAA
CAGAGCACTTCAAGCCGACAAATCTCCTGATTCAGGACGTCTCCGGTACG
TGACATGGGCAGGGGGCAAGGGCGGAGACGTGCGTGGTGGGACGGAAGGA
CTGGGAGGAAATGAGGCAGGGAGGATCGATTCATGGCCCAAGAAGTGGAC
TTGCACACAGACATCCGCGCTATCATTCTATTTGTCAACACGCTCATTAT
TGAAATAGGCGGGTGCGGAGCGATGTACAACATGGAAGTTGAGTCAGAGT
TGTTCAAGGGCAAGACGTTAGTGGCGCAGCACAGGATGGTCAATCAGGTA
CGCGTATGCGGGAGCGGAGAAGCATCGTACAACGAAAGGGCAGGTGATAA
ATAATTCGGGAAAGTTATCCGATAGAGCAAGAGAAGACATCGCGTCACCG
GTGACATGTTCTCTGTGGCTCACACATACGTATTCTCCTCCCCGAAACCA
TCCACACGGCAACTTACTCAGGTACTGGCGAAGGAGATTTCCGAGATGCA
CGGTTTGTCGCTTAAAACACGCGCGCCCAAGAAGCAATAGAATCGGAGGG
TAACAACAACTGGGGAAATGGGAAAAGTAAATAGGGGCAAACGAATGGGA
TCACGCACACATATGACAAGACCGACATGGCCGACGAGAAGGAAGAGAAG
GAAGGATTGAGGTGATATCGATGGCAATGATAATGGTGG
back to top

Coding sequence (CDS) from alignment at chr6:678328..680516-

>NO06G02360.1 ID=NO06G02360.1|Name=NO06G02360.1|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at chr6:678328..680516- (Nannochloropsis oceanica)
ATGCGGCGCGCTGTTGGCACCATATTGGTAGACGTCTCTGCCTCTGCGAC
CAGAAGACCTGCGAATGCTACAGTAGCTATCTCCTCCCTTGGCCGACCTC
TCTACCCAACTACATCTCGCTTCCGGCGGTCTTTGGCCTCTGATGTCGAC
GGCAACAGTGCCGAGTCCCTGGCTCGGGAGGAACGTATGCGTACATTACT
AACAGAGCACTTCAAGCCGACAAATCTCCTGATTCAGGACGTCTCCGGCG
GGTGCGGAGCGATGTACAACATGGAAGTTGAGTCAGAGTTGTTCAAGGGC
AAGACGTTAGTGGCGCAGCACAGGATGGTCAATCAGGTACTGGCGAAGGA
GATTTCCGAGATGCACGGTTTGTCGCTTAAAACACGCGCGCCCAAGAAGC
AATAG
back to top
Synonyms
Publications