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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:658466..660832 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02260.2 vs.
Match: EWM26210.1 (meiotic recombination protein spo11 isoform 2 [Nannochloropsis gaditana]) HSP 1 Score: 496.9 bits (1278), Expect = 7.600e-137 Identity = 271/434 (62.44%), Postives = 320/434 (73.73%), Query Frame = 0
Query: 7 SGQPLFSSFLPPHLPARVLTSSNGKHRAYIQPNSNVPSLPSSSSSSSSSSSSSSSSSSSSSSSSSSFSSSIPTAAAVADITTQEVIDRIEEFIAAWIASFSNPAITEPPTFEVPRRNQSNSTYHKGATGGDDTDTMEQDRLPGLRQGSGMVVKKLK--GKG-ARSYAAIFAVLAFSHRVLLSGQIATSRELWYHYKTSRECFKSQADCDRAVLDAAALLGVARHQLGIVGAAKGLFAGYFRFRPLGSLMAWTECNASGGEGGGG-GGGGTLIDSRWITEVMEIECAGGHRPRYVVVVEKECVFQRLLGDGLCDAAGGVVLITGKGYPDLATRACLKALVDCWGVTVLGLCDCNPHGIALLLTYKCGSLRMPESQLYRVPLRWLGVRPSQILQRFDLPDEVFQDFSEGDARKCRSLLASPFCQAHPRWREEVEAM 437
S P F P P+ +LTS+NGKH + SSS+SS +++ + SS + DI +EVI RIEEFI AWIA+ S+ I+EPPTFEV RR ++NS Y+ G ++ +LPGL+QG G+V+KKL G+G ARSYAAIFA+LAFSHR+LLS Q+ATSRE+WY+YK S CFK QADCDRAVLDAA+LLGVARHQLGIVGAAKGL AG+FRFR GS AW EC+ GG+G GG G GGTLIDS WIT+VME+EC G HRPRY+VVVEKEC+F+RL+GDGL AGG+VLITGKGYPDLATRAC+KALVD + V V+GLCDCNPHGIALLLTYKCGS RMPESQ YR+PL WLG+RPSQ+ +RFDLPD+ FQ FSEGD KC SL+ SPFCQAH WREEVE M
Sbjct: 37 SNHPPFPPTSPVAQPSSLLTSANGKH-------------------NDDLSSSTSSFPNTTPFPARIDQSSHDASGVTHDIAREEVIGRIEEFICAWIATLSDNDISEPPTFEVRRRTKANSIYYPGERKNGESC----QQLPGLKQGDGVVIKKLSEGGRGSARSYAAIFAILAFSHRILLSNQMATSREVWYNYKASHSCFKCQADCDRAVLDAASLLGVARHQLGIVGAAKGLMAGHFRFRVWGSGRAWNECDGGGGDGEGGLGCGGTLIDSCWITDVMEVECLGKHRPRYIVVVEKECMFKRLIGDGLLGQAGGIVLITGKGYPDLATRACVKALVDAFAVPVVGLCDCNPHGIALLLTYKCGSFRMPESQAYRIPLCWLGLRPSQLKRRFDLPDDTFQAFSEGDISKCSSLMDSPFCQAHLPWREEVETM 447
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02260.2 ID=NO06G02260.2|Name=NO06G02260.2|organism=Nannochloropsis oceanica|type=mRNA|length=2218bp
ACCCAAAACAAACCCATTCTTTTCGTCATATAAGTATTAATTTCCTTACA
TCGACATTTTACATTCCTGGTATGCCCGGGGATAATAAGGTCACCTCCAC
TCACACTCCTCCATTTCCTCCCTCACATCAATCCAAAGGCAAAGTTGATG
CAGCGACACCCAATTTCGGGCCAGCCGCTCTTCTCCTCTTTTCTTCCTCC
TCATCTGCCTGCCCGCGTTCTCACATCGTCTAACGGCAAGCACCGCGCCT
ACATCCAGCCAAATTCAAATGTTCCTTCACTTCCCTCCTCTTCTTCCTCT
TCTTCTTCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCTTCCTCCTCCTTCTCGTCATCGATCCCCACGGCTGCAGCGGTCGCGG
ACATAACTACTCAAGAAGTTATCGATCGCATCGAAGAGTTCATTGCCGCC
TGGATTGCGTCCTTCAGCAACCCCGCCATCACGGAACCCCCTACATTTGA
GGTCCCTCGACGCAACCAATCCAACTCCACCTACCACAAGGGCGCCACCG
GTGGCGATGACACCGACACGATGGAGCAAGACCGACTGCCGGGCCTGCGA
CAAGGAAGTGGAATGGTCGTGAAAAAGCTGAAAGGGAAGGGCGCGCGTTC
TTATGCTGCCATTTTTGCCGTGTTGGCTTTCTCACACCGCGTGCTGCTTT
CGGGGCAGATTGCGACCAGTCGAGAGTTGTGGTATCACTACAAGACGTCG
CGGGAGTGCTTCAAGAGCCAGGCGGACTGTGATCGGGCCGTGCTTGATGC
AGCGGCGCTGTTGGGCGTTGCGAGGCATCAACTAGGGATAGTGGGGGCGG
CGAAGGGGTTGTTTGCAGGGTATTTCCGGTTTCGACCGTTGGGAAGTTTG
ATGGCCTGGACGGAGTGTAATGCGAGTGGAGGAGAGGGAGGAGGTGGAGG
AGGGGGTGGAACGTTGATTGATAGTCGCTGGATAACTGAGGTGATGGAGA
TTGAGTGCGCGGGGGGGCATCGACCAAGATATGTGGTGGTGGTGGAGAAA
GAGTGTGTTTTCCAACGGCTGCTGGGGGATGGATTATGCGACGCGGCCGG
AGGTGTGGTACTTATTACAGGGAAAGGCTACCCGGATTTGGCCACGCGCG
CTTGTTTGAAGGCTTTGGTGGATTGTTGGGGAGTTACGGTGCTCGGCCTA
TGTGACTGTAATCCGCACGGCATCGCTCTCCTCCTCACCTACAAATGCGG
CTCCTTGCGCATGCCCGAGTCCCAGCTTTACCGCGTGCCACTGCGCTGGC
TCGGTGTGCGGCCTTCGCAGATTTTGCAGCGTTTTGACCTACCCGACGAG
GTTTTTCAGGACTTTTCGGAGGGGGACGCGAGGAAGTGTCGGTCGTTACT
GGCGTCTCCTTTTTGTCAGGCGCACCCCAGGTGGAGGGAGGAGGTGGAGG
CAATGGTATGCTTTTCTCATGTGTGTATATGTGCTGTTTGGCTTTCACGA
TTCGCGGCGGTACTGATGTTCGTACTTTGTCCACCACTCGCTTTCTCCCT
CTCGCCCTCCCCCGGTCCCGCGCACACACAGGCCGACGAACACATGAAAT
GCGAGCTCGAGGCGCTCAACACCTTCTCGGGCACTGAGGGTCGACGTGAT
TTTCTATGCCAGTTTGTCGTGTCCTCCTTGATGTCAGGAGACCACCTGAG
CTAAGCTGTGCGCGAAGGGGGGGGAGGGGGAGGGGCAGGAGATGGGGAGA
GTGAAAGGGAAGAGATCTGCGGAAGTGAGGCTGGTCAAGCGCACTGGACA
GTACAAGCGTATAGGACAGGAGAAGTGAAGCATGGAGAGGGAGTGGGAGA
AGTTGTTACTATAGCTGCTCGAGAGAAAAAGAAAAGTGGGGCGGCAAAAA
TGTAGAGGAGCATGCCTTTTGTTACAGCCCCTGTCGCATTTCATCCAGTT
TTTGCCCTCTCCATATGTCCCTATCCACCACATATGTGTTGGCCCCCCTA
CATGTCTGCATTCTCATTATTCCATCGGGCGGGAACCCGGCCCCACAAGG
GTATAGCTATAGCATGGGCATGGGGGCTCGCTGATGACGCCGCCGCTCGC
AACTGCCTCATCGCAGATTCCATTCCAGGGAACGTTGTCCATTTCGCATT
TGCACTGCATTGTCGGCTCTGGCTCATTCAAGTCAAAAAGGTGGACCTTA
GGCACTCCTTGCTCTTTG back to topprotein sequence of NO06G02260.2 >NO06G02260.2-protein ID=NO06G02260.2-protein|Name=NO06G02260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MQRHPISGQPLFSSFLPPHLPARVLTSSNGKHRAYIQPNSNVPSLPSSSS
SSSSSSSSSSSSSSSSSSSSSSFSSSIPTAAAVADITTQEVIDRIEEFIA
AWIASFSNPAITEPPTFEVPRRNQSNSTYHKGATGGDDTDTMEQDRLPGL
RQGSGMVVKKLKGKGARSYAAIFAVLAFSHRVLLSGQIATSRELWYHYKT
SRECFKSQADCDRAVLDAAALLGVARHQLGIVGAAKGLFAGYFRFRPLGS
LMAWTECNASGGEGGGGGGGGTLIDSRWITEVMEIECAGGHRPRYVVVVE
KECVFQRLLGDGLCDAAGGVVLITGKGYPDLATRACLKALVDCWGVTVLG
LCDCNPHGIALLLTYKCGSLRMPESQLYRVPLRWLGVRPSQILQRFDLPD
EVFQDFSEGDARKCRSLLASPFCQAHPRWREEVEAMVCFSHVCICAVWLS
RFAAVLMFVLCPPLAFSLSPSPGPAHTQADEHMKCELEALNTFSGTEGRR
DFLCQFVVSSLMSGDHLS* back to topmRNA from alignment at chr6:658466..660832+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02260.2 ID=NO06G02260.2|Name=NO06G02260.2|organism=Nannochloropsis oceanica|type=mRNA|length=2367bp|location=Sequence derived from alignment at chr6:658466..660832+ (Nannochloropsis oceanica)
ACCCAAAACAAACCCATTCTTTTCGTCATATAAGTATTAATTTCCTTACA
TCGACATTTTACATTCCTGGTATGCCCGGGGATAATAAGGTCACCTCCAC
TCACACTCCTCCATTTCCTCCCTCACATCAATCCAAAGGCAAAGTTGATG
CAGCGACACCCAATTTCGGGCCAGCCGCTCTTCTCCTCTTTTCTTCCTCC
TCATCTGCCTGCCCGCGTTCTCACATCGTCTAACGGCAAGCACCGCGCCT
ACATCCAGCCAAATTCAAATGTTCCTTCACTTCCCTCCTCTTCTTCCTCT
TCTTCTTCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCTTCCTCCTCCTTCTCGTCATCGATCCCCACGGCTGCAGCGGTCGCGG
ACATAACTACTCAAGAAGTTATCGATCGCATCGAAGAGTTCATTGCCGCC
TGGATTGCGTCCTTCAGCAACCCCGCCATCACGGAACCCCCTACATTTGA
GGTCCCTCGACGCAACCAATCCAACTCCACCTACCACAAGGGCGCCACCG
GTGGCGATGACACCGACACGATGGAGCAAGACCGACTGCCGGGCCTGCGA
CAAGGAAGTGGAATGGTCGTGAAAAAGCTGAAAGGGAAGGGCGCGCGTTC
TTATGCTGCCATTTTTGCCGTGTTGGCTTTCTCACACCGCGTGCTGCTTT
CGGGGCAGATTGCGACCAGTCGAGAGTTGTGGTATCACTACAAGACGTCG
CGGGAGTGCTTCAAGAGCCAGGCGGACTGTGATCGGGCCGTGCTTGATGC
AGCGGCGCTGTTGGGCGTTGCGAGGCATCAACTAGGGATAGTGGGGGCGG
CGAAGGGGTTGTTTGCAGGGTATTTCCGGTTTCGACCGTTGGGAAGTTTG
ATGGCCTGGACGGAGTGTAATGCGAGTGGAGGAGAGGGAGGAGGTGGAGG
AGGGGGTGGAACGTTGATTGATAGTCGCTGGATAACTGAGGTGATGGAGA
TTGAGTGCGCGGGGGGGCATCGACCAAGATATGTGGTGGTGGTGGAGAAA
GAGTGTGTTTTCCAACGGCTGCTGGGGGATGGATTATGCGACGCGGCCGG
AGGTGTGGTACTTATTACAGGGAAAGGCTACCCGGATTTGGCCACGCGCG
CTTGTTTGAAGGCTTTGGTGGATTGTTGGGGAGTTACGGTGCTCGGCCTA
TGTGACTGTAATCCGTGAGTATTTCTTACGGTTCTGGTTGGAGGGATGCG
TGTATGCGCGTGTGTGCGTCTATCTGTGTCCCTTTTACAGTGCTAGTCAG
GTCAGTGTCAGAGTCTTCGCCCTCCCTCCCCCGCTTTTTCCCTCCCCCTC
CTCTCACATTCAGGCACGGCATCGCTCTCCTCCTCACCTACAAATGCGGC
TCCTTGCGCATGCCCGAGTCCCAGCTTTACCGCGTGCCACTGCGCTGGCT
CGGTGTGCGGCCTTCGCAGATTTTGCAGCGTTTTGACCTACCCGACGAGG
TTTTTCAGGACTTTTCGGAGGGGGACGCGAGGAAGTGTCGGTCGTTACTG
GCGTCTCCTTTTTGTCAGGCGCACCCCAGGTGGAGGGAGGAGGTGGAGGC
AATGGTATGCTTTTCTCATGTGTGTATATGTGCTGTTTGGCTTTCACGAT
TCGCGGCGGTACTGATGTTCGTACTTTGTCCACCACTCGCTTTCTCCCTC
TCGCCCTCCCCCGGTCCCGCGCACACACAGGCCGACGAACACATGAAATG
CGAGCTCGAGGCGCTCAACACCTTCTCGGGCACTGAGGGTCGACGTGATT
TTCTATGCCAGTTTGTCGTGTCCTCCTTGATGTCAGGAGACCACCTGAGC
TAAGCTGTGCGCGAAGGGGGGGGAGGGGGAGGGGCAGGAGATGGGGAGAG
TGAAAGGGAAGAGATCTGCGGAAGTGAGGCTGGTCAAGCGCACTGGACAG
TACAAGCGTATAGGACAGGAGAAGTGAAGCATGGAGAGGGAGTGGGAGAA
GTTGTTACTATAGCTGCTCGAGAGAAAAAGAAAAGTGGGGCGGCAAAAAT
GTAGAGGAGCATGCCTTTTGTTACAGCCCCTGTCGCATTTCATCCAGTTT
TTGCCCTCTCCATATGTCCCTATCCACCACATATGTGTTGGCCCCCCTAC
ATGTCTGCATTCTCATTATTCCATCGGGCGGGAACCCGGCCCCACAAGGG
TATAGCTATAGCATGGGCATGGGGGCTCGCTGATGACGCCGCCGCTCGCA
ACTGCCTCATCGCAGATTCCATTCCAGGGAACGTTGTCCATTTCGCATTT
GCACTGCATTGTCGGCTCTGGCTCATTCAAGTCAAAAAGGTGGACCTTAG
GCACTCCTTGCTCTTTG back to topCoding sequence (CDS) from alignment at chr6:658466..660832+ >NO06G02260.2 ID=NO06G02260.2|Name=NO06G02260.2|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at chr6:658466..660832+ (Nannochloropsis oceanica)
ATGCAGCGACACCCAATTTCGGGCCAGCCGCTCTTCTCCTCTTTTCTTCC
TCCTCATCTGCCTGCCCGCGTTCTCACATCGTCTAACGGCAAGCACCGCG
CCTACATCCAGCCAAATTCAAATGTTCCTTCACTTCCCTCCTCTTCTTCC
TCTTCTTCTTCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCTTCCTCCTCCTTCTCGTCATCGATCCCCACGGCTGCAGCGGTCG
CGGACATAACTACTCAAGAAGTTATCGATCGCATCGAAGAGTTCATTGCC
GCCTGGATTGCGTCCTTCAGCAACCCCGCCATCACGGAACCCCCTACATT
TGAGGTCCCTCGACGCAACCAATCCAACTCCACCTACCACAAGGGCGCCA
CCGGTGGCGATGACACCGACACGATGGAGCAAGACCGACTGCCGGGCCTG
CGACAAGGAAGTGGAATGGTCGTGAAAAAGCTGAAAGGGAAGGGCGCGCG
TTCTTATGCTGCCATTTTTGCCGTGTTGGCTTTCTCACACCGCGTGCTGC
TTTCGGGGCAGATTGCGACCAGTCGAGAGTTGTGGTATCACTACAAGACG
TCGCGGGAGTGCTTCAAGAGCCAGGCGGACTGTGATCGGGCCGTGCTTGA
TGCAGCGGCGCTGTTGGGCGTTGCGAGGCATCAACTAGGGATAGTGGGGG
CGGCGAAGGGGTTGTTTGCAGGGTATTTCCGGTTTCGACCGTTGGGAAGT
TTGATGGCCTGGACGGAGTGTAATGCGAGTGGAGGAGAGGGAGGAGGTGG
AGGAGGGGGTGGAACGTTGATTGATAGTCGCTGGATAACTGAGGTGATGG
AGATTGAGTGCGCGGGGGGGCATCGACCAAGATATGTGGTGGTGGTGGAG
AAAGAGTGTGTTTTCCAACGGCTGCTGGGGGATGGATTATGCGACGCGGC
CGGAGGTGTGGTACTTATTACAGGGAAAGGCTACCCGGATTTGGCCACGC
GCGCTTGTTTGAAGGCTTTGGTGGATTGTTGGGGAGTTACGGTGCTCGGC
CTATGTGACTGTAATCCGCACGGCATCGCTCTCCTCCTCACCTACAAATG
CGGCTCCTTGCGCATGCCCGAGTCCCAGCTTTACCGCGTGCCACTGCGCT
GGCTCGGTGTGCGGCCTTCGCAGATTTTGCAGCGTTTTGACCTACCCGAC
GAGGTTTTTCAGGACTTTTCGGAGGGGGACGCGAGGAAGTGTCGGTCGTT
ACTGGCGTCTCCTTTTTGTCAGGCGCACCCCAGGTGGAGGGAGGAGGTGG
AGGCAATGGTATGCTTTTCTCATGTGTGTATATGTGCTGTTTGGCTTTCA
CGATTCGCGGCGGTACTGATGTTCGTACTTTGTCCACCACTCGCTTTCTC
CCTCTCGCCCTCCCCCGGTCCCGCGCACACACAGGCCGACGAACACATGA
AATGCGAGCTCGAGGCGCTCAACACCTTCTCGGGCACTGAGGGTCGACGT
GATTTTCTATGCCAGTTTGTCGTGTCCTCCTTGATGTCAGGAGACCACCT
GAGCTAA back to top
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