NO06G02160.1, NO06G02160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02160.1
Unique NameNO06G02160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1660
Alignment locationchr6:632223..634123 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:632223..634123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02160.1 vs.
Match: EWM26209.1 (Protein kinase, catalytic domain protein [Nannochloropsis gaditana])

HSP 1 Score: 473.8 bits (1218), Expect = 6.300e-130
Identity = 279/474 (58.86%), Postives = 340/474 (71.73%), Query Frame = 0 
Query:    3 IRSAILCLLPIVFIVTTAVFLPCCSAFAPLFHPTSNPTRQSRHRVGKGLSISSIPLHFPSSTTLAVANFNWGGFLSRKPEPPKDTTPAPLDAICSAKTQAFGRGAMTAATLIAFLKKYSTEKKGQTLDQLVASAAVALPNQSRRAMLLQTYDSLSTSTQKRSMNKFLSSSAVASFSSSSSSSKAGGAILGGKYSLLSTGSQGPRVSSGKSAVVDAI----AVNKSPKSI--LKAKLSRNVVALRREADNLKALRGVGAGARKSVIEVFDFLENYDGRGSHALIMEAGKEDLVGRVKRGGALSRKDLKKACAVVVEVLGALEKKQLVWTDLRASNFVVMPAKGLGDGQIKAIDLESAVPVGERPVDCTPEVTPPEVARLYVQGRLTEAVAVTSYDVWSLGILLLFLASGGKNLFDGEASSRVMASLASATQEKVEGQVEKLVSDVKIATFIKTLLVVDPRQRLGVAAIKAKLFFF 471
            +R A+  LL I+F  T   F P  +AF P      +P    +  +        I L   SST L + NFNWGGFL  +         A LD  C AK  AF RGAMTA++LI+FLKKY+  KKGQTLD+LV ++A  +PN+SRRA+L++TY SLS+S Q  S+ +F S    A F+S S S    G +LGGKY ++STGSQGPR+SSGKSAV+DA+    +V  S K I  LKAKLSRN+ AL+RE +N+ ALRG G+ A+KS+IEV + +ENYDGRG HAL+MEAGKEDLV ++KR GA SR++LKK CA   +VL ALEK++LVWTDLRA+NFV+M     G G +KAIDLESAVP+ E+PVDCTPEVTPPEVA LYVQGRLT+A    SYDVWSLGILLLFLASGGKNLF+GEASSRVM SLASATQEKV+ QV++LV D K A FIK LLVVDP+ RL  AA+K  L FF
Sbjct:    1 MRGAVF-LLAILF--TFVSFTPSAAAFRP------SPLLGEKCFMFSSQPRQDIRLPLRSSTVLFLVNFNWGGFLRPRENDRGRVPEASLDDACQAKALAFSRGAMTASSLISFLKKYAASKKGQTLDKLVEASAQVVPNESRRALLIKTYASLSSSAQASSLTRFTS----APFTSPSVS----GFLLGGKYRVISTGSQGPRISSGKSAVLDAVMEDNSVTGSRKGISPLKAKLSRNLAALQRERNNIIALRGTGSAAKKSIIEVLELMENYDGRGGHALVMEAGKEDLVAKIKRDGASSRQELKKICATAGDVLLALEKRRLVWTDLRAANFVLMQ----GSGGVKAIDLESAVPLNEKPVDCTPEVTPPEVASLYVQGRLTQATVAPSYDVWSLGILLLFLASGGKNLFEGEASSRVMTSLASATQEKVDLQVDRLVGDTKSAAFIKKLLVVDPKSRLSAAAVKRNLLFF 453
The following BLAST results are available for this feature:
BLAST of NO06G02160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26209.16.300e-13058.86Protein kinase, catalytic domain protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02160NO06G02160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02160.1NO06G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02160.1.cds1NO06G02160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02160.1.cds2NO06G02160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02160.1 ID=NO06G02160.1|Name=NO06G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1660bp
TGCGGTCTTCGTTCACCCTTTCACATGCATTCATTGTCGCCTTCACACAG
GTTTCGCCATGCCGATACGATCTGCGATACTATGCCTTCTTCCCATCGTC
TTTATAGTCACCACCGCAGTTTTTTTACCTTGCTGTAGCGCGTTTGCCCC
TCTTTTCCATCCCACGTCTAACCCTACTCGTCAGTCAAGACATCGCGTTG
GAAAAGGTCTGTCAATCTCGTCAATACCATTGCACTTCCCCTCCTCCACA
ACCCTTGCCGTCGCGAACTTCAATTGGGGAGGGTTCTTAAGTCGCAAACC
CGAACCTCCAAAGGACACCACTCCGGCACCGCTTGACGCCATCTGCTCCG
CCAAAACACAGGCTTTTGGTCGAGGTGCCATGACTGCAGCCACATTGATT
GCGTTTCTCAAGAAATATAGCACGGAAAAGAAGGGACAAACTCTTGATCA
GCTTGTGGCGTCGGCGGCAGTCGCCTTGCCGAATCAATCCCGTAGAGCCA
TGCTTCTCCAAACGTACGATTCGCTTTCTACTTCCACGCAAAAAAGAAGT
ATGAACAAATTTTTATCCTCCTCTGCCGTTGCTTCCTTCTCATCCTCGTC
CTCCTCTTCAAAGGCAGGCGGAGCCATATTGGGGGGAAAGTACAGTCTTC
TCAGCACGGGCTCCCAGGGTCCCCGAGTCAGCAGTGGGAAGAGCGCTGTT
GTTGACGCCATTGCTGTCAATAAAAGTCCCAAGAGTATCCTCAAAGCGAA
GTTAAGTCGGAATGTGGTGGCTTTGCGAAGAGAAGCCGACAACCTCAAGG
CCTTGCGGGGAGTGGGGGCTGGGGCAAGGAAGAGCGTGATTGAAGTCTTT
GATTTCTTGGAGAATTACGACGGCCGCGGCAGCCATGCACTGATCATGGA
GGCAGGGAAAGAGGATCTTGTAGGGAGGGTGAAGAGAGGCGGTGCGCTGT
CGCGGAAGGACTTGAAGAAAGCGTGTGCTGTTGTGGTAGAGGTGTTGGGA
GCACTCGAAAAGAAACAGCTGGTCTGGACTGACCTAAGAGCATCCAATTT
CGTCGTGATGCCAGCAAAAGGCCTGGGAGATGGACAAATCAAAGCAATTG
ATTTGGAGAGTGCCGTGCCTGTGGGAGAAAGGCCAGTAGATTGTACGCCT
GAGGTGACACCACCTGAGGTTGCACGTTTATATGTCCAAGGACGGTTGAC
GGAGGCTGTGGCGGTGACTAGTTATGACGTGTGGAGCTTGGGAATTTTGC
TCTTGTTTCTGGCATCAGGTGGTAAGAATTTATTCGATGGGGAAGCATCG
AGTCGCGTGATGGCTTCATTGGCATCGGCGACGCAAGAGAAAGTGGAAGG
GCAGGTAGAGAAGTTGGTGTCGGATGTCAAGATTGCGACATTCATCAAAA
CTCTGTTGGTCGTGGACCCAAGGCAGAGACTGGGTGTAGCGGCGATCAAA
GCAAAGCTTTTCTTCTTCTAGATTGAGAAAGGTATGGGTGATTAGCCGCT
TGCAGTGTATTATAGAGGTGGAAAAGAGGAGTGAGGGCGGCTGGTTTGGG
AACGTACTTATATCTAGGCTGACTCAAGCCACGGATTTTATGACGCTTGA
AGGGATAGGGTACTAGTAAACTTTTAAAAATATGATAGTAATAGCACATG
AGAACCAATG
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protein sequence of NO06G02160.1

>NO06G02160.1-protein ID=NO06G02160.1-protein|Name=NO06G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MPIRSAILCLLPIVFIVTTAVFLPCCSAFAPLFHPTSNPTRQSRHRVGKG
LSISSIPLHFPSSTTLAVANFNWGGFLSRKPEPPKDTTPAPLDAICSAKT
QAFGRGAMTAATLIAFLKKYSTEKKGQTLDQLVASAAVALPNQSRRAMLL
QTYDSLSTSTQKRSMNKFLSSSAVASFSSSSSSSKAGGAILGGKYSLLST
GSQGPRVSSGKSAVVDAIAVNKSPKSILKAKLSRNVVALRREADNLKALR
GVGAGARKSVIEVFDFLENYDGRGSHALIMEAGKEDLVGRVKRGGALSRK
DLKKACAVVVEVLGALEKKQLVWTDLRASNFVVMPAKGLGDGQIKAIDLE
SAVPVGERPVDCTPEVTPPEVARLYVQGRLTEAVAVTSYDVWSLGILLLF
LASGGKNLFDGEASSRVMASLASATQEKVEGQVEKLVSDVKIATFIKTLL
VVDPRQRLGVAAIKAKLFFF*
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mRNA from alignment at chr6:632223..634123-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02160.1 ID=NO06G02160.1|Name=NO06G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1901bp|location=Sequence derived from alignment at chr6:632223..634123- (Nannochloropsis oceanica)
TGCGGTCTTCGTTCACCCTTTCACATGCATTCATTGTCGCCTTCACACAG
GTTTCGCCATGCCGATACGATCTGCGATACTATGCCTTCTTCCCATCGTC
TTTATAGTCACCACCGCAGTTTTTTTACCTTGCTGTAGCGCGTTTGCCCC
TCTTTTCCATCCCACGTCTAACCCTACTCGTCAGTCAAGACATCGCGTTG
GAAAAGGTATGAAGCCAATACCTGCACCTACTCCTAATATACTTTCTCGC
ATTGAATTTTCAGCCACCCATCGTACTTGCGTGGTCACTTATCCCTGCAT
ACATGAGAAAGAGTGGCTACAGCATCGTCCGTTCCGTCCACGTCATTTCA
TTTGGGGACGTATCTGTAAGCCACACACGCTTCTCTAGGGATAAAATGAA
GTACAATTCACATCCCACGACGAACGACACGTTTACCCTTCAAACAGGTC
TGTCAATCTCGTCAATACCATTGCACTTCCCCTCCTCCACAACCCTTGCC
GTCGCGAACTTCAATTGGGGAGGGTTCTTAAGTCGCAAACCCGAACCTCC
AAAGGACACCACTCCGGCACCGCTTGACGCCATCTGCTCCGCCAAAACAC
AGGCTTTTGGTCGAGGTGCCATGACTGCAGCCACATTGATTGCGTTTCTC
AAGAAATATAGCACGGAAAAGAAGGGACAAACTCTTGATCAGCTTGTGGC
GTCGGCGGCAGTCGCCTTGCCGAATCAATCCCGTAGAGCCATGCTTCTCC
AAACGTACGATTCGCTTTCTACTTCCACGCAAAAAAGAAGTATGAACAAA
TTTTTATCCTCCTCTGCCGTTGCTTCCTTCTCATCCTCGTCCTCCTCTTC
AAAGGCAGGCGGAGCCATATTGGGGGGAAAGTACAGTCTTCTCAGCACGG
GCTCCCAGGGTCCCCGAGTCAGCAGTGGGAAGAGCGCTGTTGTTGACGCC
ATTGCTGTCAATAAAAGTCCCAAGAGTATCCTCAAAGCGAAGTTAAGTCG
GAATGTGGTGGCTTTGCGAAGAGAAGCCGACAACCTCAAGGCCTTGCGGG
GAGTGGGGGCTGGGGCAAGGAAGAGCGTGATTGAAGTCTTTGATTTCTTG
GAGAATTACGACGGCCGCGGCAGCCATGCACTGATCATGGAGGCAGGGAA
AGAGGATCTTGTAGGGAGGGTGAAGAGAGGCGGTGCGCTGTCGCGGAAGG
ACTTGAAGAAAGCGTGTGCTGTTGTGGTAGAGGTGTTGGGAGCACTCGAA
AAGAAACAGCTGGTCTGGACTGACCTAAGAGCATCCAATTTCGTCGTGAT
GCCAGCAAAAGGCCTGGGAGATGGACAAATCAAAGCAATTGATTTGGAGA
GTGCCGTGCCTGTGGGAGAAAGGCCAGTAGATTGTACGCCTGAGGTGACA
CCACCTGAGGTTGCACGTTTATATGTCCAAGGACGGTTGACGGAGGCTGT
GGCGGTGACTAGTTATGACGTGTGGAGCTTGGGAATTTTGCTCTTGTTTC
TGGCATCAGGTGGTAAGAATTTATTCGATGGGGAAGCATCGAGTCGCGTG
ATGGCTTCATTGGCATCGGCGACGCAAGAGAAAGTGGAAGGGCAGGTAGA
GAAGTTGGTGTCGGATGTCAAGATTGCGACATTCATCAAAACTCTGTTGG
TCGTGGACCCAAGGCAGAGACTGGGTGTAGCGGCGATCAAAGCAAAGCTT
TTCTTCTTCTAGATTGAGAAAGGTATGGGTGATTAGCCGCTTGCAGTGTA
TTATAGAGGTGGAAAAGAGGAGTGAGGGCGGCTGGTTTGGGAACGTACTT
ATATCTAGGCTGACTCAAGCCACGGATTTTATGACGCTTGAAGGGATAGG
GTACTAGTAAACTTTTAAAAATATGATAGTAATAGCACATGAGAACCAAT
G
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Coding sequence (CDS) from alignment at chr6:632223..634123-

>NO06G02160.1 ID=NO06G02160.1|Name=NO06G02160.1|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr6:632223..634123- (Nannochloropsis oceanica)
ATGCCGATACGATCTGCGATACTATGCCTTCTTCCCATCGTCTTTATAGT
CACCACCGCAGTTTTTTTACCTTGCTGTAGCGCGTTTGCCCCTCTTTTCC
ATCCCACGTCTAACCCTACTCGTCAGTCAAGACATCGCGTTGGAAAAGGT
CTGTCAATCTCGTCAATACCATTGCACTTCCCCTCCTCCACAACCCTTGC
CGTCGCGAACTTCAATTGGGGAGGGTTCTTAAGTCGCAAACCCGAACCTC
CAAAGGACACCACTCCGGCACCGCTTGACGCCATCTGCTCCGCCAAAACA
CAGGCTTTTGGTCGAGGTGCCATGACTGCAGCCACATTGATTGCGTTTCT
CAAGAAATATAGCACGGAAAAGAAGGGACAAACTCTTGATCAGCTTGTGG
CGTCGGCGGCAGTCGCCTTGCCGAATCAATCCCGTAGAGCCATGCTTCTC
CAAACGTACGATTCGCTTTCTACTTCCACGCAAAAAAGAAGTATGAACAA
ATTTTTATCCTCCTCTGCCGTTGCTTCCTTCTCATCCTCGTCCTCCTCTT
CAAAGGCAGGCGGAGCCATATTGGGGGGAAAGTACAGTCTTCTCAGCACG
GGCTCCCAGGGTCCCCGAGTCAGCAGTGGGAAGAGCGCTGTTGTTGACGC
CATTGCTGTCAATAAAAGTCCCAAGAGTATCCTCAAAGCGAAGTTAAGTC
GGAATGTGGTGGCTTTGCGAAGAGAAGCCGACAACCTCAAGGCCTTGCGG
GGAGTGGGGGCTGGGGCAAGGAAGAGCGTGATTGAAGTCTTTGATTTCTT
GGAGAATTACGACGGCCGCGGCAGCCATGCACTGATCATGGAGGCAGGGA
AAGAGGATCTTGTAGGGAGGGTGAAGAGAGGCGGTGCGCTGTCGCGGAAG
GACTTGAAGAAAGCGTGTGCTGTTGTGGTAGAGGTGTTGGGAGCACTCGA
AAAGAAACAGCTGGTCTGGACTGACCTAAGAGCATCCAATTTCGTCGTGA
TGCCAGCAAAAGGCCTGGGAGATGGACAAATCAAAGCAATTGATTTGGAG
AGTGCCGTGCCTGTGGGAGAAAGGCCAGTAGATTGTACGCCTGAGGTGAC
ACCACCTGAGGTTGCACGTTTATATGTCCAAGGACGGTTGACGGAGGCTG
TGGCGGTGACTAGTTATGACGTGTGGAGCTTGGGAATTTTGCTCTTGTTT
CTGGCATCAGGTGGTAAGAATTTATTCGATGGGGAAGCATCGAGTCGCGT
GATGGCTTCATTGGCATCGGCGACGCAAGAGAAAGTGGAAGGGCAGGTAG
AGAAGTTGGTGTCGGATGTCAAGATTGCGACATTCATCAAAACTCTGTTG
GTCGTGGACCCAAGGCAGAGACTGGGTGTAGCGGCGATCAAAGCAAAGCT
TTTCTTCTTCTAG
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Synonyms
Publications