NO06G02120.1, NO06G02120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02120.1
Unique NameNO06G02120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1664
Alignment locationchr6:619738..621401 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:619738..621401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02120.1 vs.
Match: EWM26217.1 (wd repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 453.8 bits (1166), Expect = 6.600e-124
Identity = 250/419 (59.67%), Postives = 295/419 (70.41%), Query Frame = 0 
Query:    7 PPLAPSQQPQPPQTHMPSTSAQPPSPSMSLHDAATSAAAAQEGTRPPQPAQDSRTASASASADGKGEEYETHQKRHAEEDDDDQGQWHCTPPSGPYRSAGVLGRRCKAVSSLKFSGNGQLLAAASADTTITIWDPIKRTQVRELKGGHTHGVSDVAWARDSSYLATGSDDKTIRIWDTETGQEMGKMQGHTGYVFCVAFNPQGSLLASGSEDENVKLWDLRTGGCLKTLEAHAEPVTGVDFNGEGTCLVSGSYDGLVRLWDAGMGQCLKTMFAEGSPAVGCVKWAPNGEYVLVSSLDSMIRLWGMRSPSRVVKTYQGHRNERLCMSAAFVYLQGQGKHRHKQQQQQQQQQQQQQQQQQQQQFVVSGSEDGKVYLWDVRTGRFVQALGGHKAAVLSLAVHPSRGVLASGGTSGDGVIRLW 426
            P L   +Q    +T   S+   PPSP +S      S+AAA+E  R        +T++ SA      E     +   AEE++D  GQ  C P +GPY++AG LG++ +AVSSLKFSG+G+LLAAASADTTI+IWDP KR  VRELKGGHT GVSDVAWARDS YLA+ SDDKT+RIWDTETGQE+G+  GHTGYVFCV FN QGSLLASGS DE+V LWDLR G CL+TL AHAEPVTGVDFN EGTCLVSGSYDGLVRLW+ GMG CLKT+FAEG+PAV  V++APNG  VLVS+LDS +RLW + SPS V KTYQGH+N RLC  A +    G                   Q  +   Q+V SGSEDGKVY+WDV++   VQ LGGH+ AVLSLA HP+ GVLASGGT+ D  IRLW
Sbjct:    2 PVLQDERQHHSSETFSGSSCPSPPSPPLSPPALLVSSAAAEECAR--------KTSNHSARLQDLSEVSMNPENVQAEEEEDG-GQPQCAPEAGPYQAAGSLGKQRRAVSSLKFSGSGELLAAASADTTISIWDPKKRLLVRELKGGHTQGVSDVAWARDSQYLASASDDKTVRIWDTETGQELGRFIGHTGYVFCVTFNAQGSLLASGSADESVHLWDLRAGSCLRTLAAHAEPVTGVDFNEEGTCLVSGSYDGLVRLWNVGMGHCLKTLFAEGAPAVSHVRYAPNGRSVLVSTLDSTVRLWKVASPSAVTKTYQGHQNLRLCTFACYCAPDGAA--------------ASGQGHKNGPQYVSSGSEDGKVYVWDVQSQALVQTLGGHQDAVLSLAAHPTDGVLASGGTTADRSIRLW 397
The following BLAST results are available for this feature:
BLAST of NO06G02120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26217.16.600e-12459.67wd repeat containing protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02120NO06G02120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02120.1NO06G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02120.1.cds1NO06G02120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02120.1 ID=NO06G02120.1|Name=NO06G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp
CTTGATGATATAATAGAAGCCTCAACGCGCAGCCCCATTGTCACTCAATA
GGCTGTGATGGACACCCACTGACAACTTCATCCACGCACACACGTGCAAA
GCACAGACATGAGCAATGAGGAACCGCCACCACTGGCGCCATCGCAACAA
CCGCAGCCACCACAAACGCACATGCCATCTACTTCCGCTCAACCTCCTTC
TCCCTCCATGTCGTTACACGATGCTGCCACCTCTGCTGCTGCCGCGCAGG
AGGGCACCAGACCACCACAACCGGCACAAGATTCAAGAACAGCATCAGCA
TCAGCTTCAGCTGATGGCAAAGGAGAAGAATATGAGACGCACCAAAAGCG
GCATGCGGAGGAAGACGACGACGATCAAGGTCAATGGCATTGCACACCAC
CCTCAGGGCCCTACCGATCTGCCGGTGTACTAGGACGACGATGCAAGGCG
GTCTCTTCTCTTAAATTCTCCGGCAATGGTCAGCTACTGGCAGCAGCCTC
GGCCGACACAACCATAACTATTTGGGACCCCATCAAACGGACGCAAGTCC
GTGAGCTGAAAGGAGGGCACACCCATGGTGTCTCGGACGTAGCCTGGGCC
CGCGATAGCTCCTACCTCGCCACGGGCTCCGACGACAAGACGATTCGAAT
CTGGGACACAGAGACTGGACAGGAAATGGGGAAAATGCAGGGGCATACAG
GGTACGTGTTTTGCGTTGCATTCAATCCTCAAGGCTCTTTATTGGCTTCG
GGCTCTGAGGACGAAAACGTGAAATTATGGGATTTACGTACCGGTGGGTG
CTTAAAGACGTTGGAGGCTCATGCGGAGCCGGTCACAGGGGTTGACTTCA
ATGGAGAGGGGACTTGCCTAGTCAGTGGGAGTTATGACGGGTTGGTGCGG
CTGTGGGATGCTGGGATGGGCCAGTGTCTGAAGACCATGTTTGCCGAAGG
GAGTCCTGCGGTTGGTTGTGTGAAGTGGGCACCGAATGGCGAGTACGTGT
TGGTGTCCTCATTGGACTCGATGATCAGGCTTTGGGGGATGAGGAGCCCG
AGTCGTGTGGTGAAGACGTATCAAGGGCATCGAAACGAGAGGTTGTGTAT
GTCGGCGGCGTTTGTGTATTTGCAGGGGCAGGGGAAGCACCGACACAAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGTTTGTGGTGAGTGGATCGGAGGATGGCAAAGTATACTTATG
GGATGTACGTACTGGGAGGTTCGTGCAGGCCTTAGGAGGGCATAAGGCGG
CGGTGTTGAGCTTGGCTGTTCATCCTTCTCGAGGGGTGCTGGCCTCGGGG
GGGACAAGCGGGGATGGCGTGATCCGGTTGTGGTGCACGAAGGAGGAGGC
GCAAGAGGTGTTGATGGAGCAAAACGGTGGTTGTGGAGGAGGGAGAGAAG
GGGGTGGTGTGGAAATGGAGCTTGACAGTCTAAACTAGTCGAAGGTTTGT
ATGTATAGGGGAAGTAAGAGCTCAATGGTGTGGGAAGGAGGAAATGGATG
CGAGTGCATCAGGGGCGGCGCAAAGGAAGGTAAATGATCGAAAATGGGAG
GTAGTTGAAAATTGACTTCAATTTTCCAACATAAAAAAAGAAGCAAAAAG
CATACATATCTTGA
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protein sequence of NO06G02120.1

>NO06G02120.1-protein ID=NO06G02120.1-protein|Name=NO06G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MSNEEPPPLAPSQQPQPPQTHMPSTSAQPPSPSMSLHDAATSAAAAQEGT
RPPQPAQDSRTASASASADGKGEEYETHQKRHAEEDDDDQGQWHCTPPSG
PYRSAGVLGRRCKAVSSLKFSGNGQLLAAASADTTITIWDPIKRTQVREL
KGGHTHGVSDVAWARDSSYLATGSDDKTIRIWDTETGQEMGKMQGHTGYV
FCVAFNPQGSLLASGSEDENVKLWDLRTGGCLKTLEAHAEPVTGVDFNGE
GTCLVSGSYDGLVRLWDAGMGQCLKTMFAEGSPAVGCVKWAPNGEYVLVS
SLDSMIRLWGMRSPSRVVKTYQGHRNERLCMSAAFVYLQGQGKHRHKQQQ
QQQQQQQQQQQQQQQQQFVVSGSEDGKVYLWDVRTGRFVQALGGHKAAVL
SLAVHPSRGVLASGGTSGDGVIRLWCTKEEAQEVLMEQNGGCGGGREGGG
VEMELDSLN*
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mRNA from alignment at chr6:619738..621401+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02120.1 ID=NO06G02120.1|Name=NO06G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp|location=Sequence derived from alignment at chr6:619738..621401+ (Nannochloropsis oceanica)
CTTGATGATATAATAGAAGCCTCAACGCGCAGCCCCATTGTCACTCAATA
GGCTGTGATGGACACCCACTGACAACTTCATCCACGCACACACGTGCAAA
GCACAGACATGAGCAATGAGGAACCGCCACCACTGGCGCCATCGCAACAA
CCGCAGCCACCACAAACGCACATGCCATCTACTTCCGCTCAACCTCCTTC
TCCCTCCATGTCGTTACACGATGCTGCCACCTCTGCTGCTGCCGCGCAGG
AGGGCACCAGACCACCACAACCGGCACAAGATTCAAGAACAGCATCAGCA
TCAGCTTCAGCTGATGGCAAAGGAGAAGAATATGAGACGCACCAAAAGCG
GCATGCGGAGGAAGACGACGACGATCAAGGTCAATGGCATTGCACACCAC
CCTCAGGGCCCTACCGATCTGCCGGTGTACTAGGACGACGATGCAAGGCG
GTCTCTTCTCTTAAATTCTCCGGCAATGGTCAGCTACTGGCAGCAGCCTC
GGCCGACACAACCATAACTATTTGGGACCCCATCAAACGGACGCAAGTCC
GTGAGCTGAAAGGAGGGCACACCCATGGTGTCTCGGACGTAGCCTGGGCC
CGCGATAGCTCCTACCTCGCCACGGGCTCCGACGACAAGACGATTCGAAT
CTGGGACACAGAGACTGGACAGGAAATGGGGAAAATGCAGGGGCATACAG
GGTACGTGTTTTGCGTTGCATTCAATCCTCAAGGCTCTTTATTGGCTTCG
GGCTCTGAGGACGAAAACGTGAAATTATGGGATTTACGTACCGGTGGGTG
CTTAAAGACGTTGGAGGCTCATGCGGAGCCGGTCACAGGGGTTGACTTCA
ATGGAGAGGGGACTTGCCTAGTCAGTGGGAGTTATGACGGGTTGGTGCGG
CTGTGGGATGCTGGGATGGGCCAGTGTCTGAAGACCATGTTTGCCGAAGG
GAGTCCTGCGGTTGGTTGTGTGAAGTGGGCACCGAATGGCGAGTACGTGT
TGGTGTCCTCATTGGACTCGATGATCAGGCTTTGGGGGATGAGGAGCCCG
AGTCGTGTGGTGAAGACGTATCAAGGGCATCGAAACGAGAGGTTGTGTAT
GTCGGCGGCGTTTGTGTATTTGCAGGGGCAGGGGAAGCACCGACACAAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGTTTGTGGTGAGTGGATCGGAGGATGGCAAAGTATACTTATG
GGATGTACGTACTGGGAGGTTCGTGCAGGCCTTAGGAGGGCATAAGGCGG
CGGTGTTGAGCTTGGCTGTTCATCCTTCTCGAGGGGTGCTGGCCTCGGGG
GGGACAAGCGGGGATGGCGTGATCCGGTTGTGGTGCACGAAGGAGGAGGC
GCAAGAGGTGTTGATGGAGCAAAACGGTGGTTGTGGAGGAGGGAGAGAAG
GGGGTGGTGTGGAAATGGAGCTTGACAGTCTAAACTAGTCGAAGGTTTGT
ATGTATAGGGGAAGTAAGAGCTCAATGGTGTGGGAAGGAGGAAATGGATG
CGAGTGCATCAGGGGCGGCGCAAAGGAAGGTAAATGATCGAAAATGGGAG
GTAGTTGAAAATTGACTTCAATTTTCCAACATAAAAAAAGAAGCAAAAAG
CATACATATCTTGA
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Coding sequence (CDS) from alignment at chr6:619738..621401+

>NO06G02120.1 ID=NO06G02120.1|Name=NO06G02120.1|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at chr6:619738..621401+ (Nannochloropsis oceanica)
ATGAGCAATGAGGAACCGCCACCACTGGCGCCATCGCAACAACCGCAGCC
ACCACAAACGCACATGCCATCTACTTCCGCTCAACCTCCTTCTCCCTCCA
TGTCGTTACACGATGCTGCCACCTCTGCTGCTGCCGCGCAGGAGGGCACC
AGACCACCACAACCGGCACAAGATTCAAGAACAGCATCAGCATCAGCTTC
AGCTGATGGCAAAGGAGAAGAATATGAGACGCACCAAAAGCGGCATGCGG
AGGAAGACGACGACGATCAAGGTCAATGGCATTGCACACCACCCTCAGGG
CCCTACCGATCTGCCGGTGTACTAGGACGACGATGCAAGGCGGTCTCTTC
TCTTAAATTCTCCGGCAATGGTCAGCTACTGGCAGCAGCCTCGGCCGACA
CAACCATAACTATTTGGGACCCCATCAAACGGACGCAAGTCCGTGAGCTG
AAAGGAGGGCACACCCATGGTGTCTCGGACGTAGCCTGGGCCCGCGATAG
CTCCTACCTCGCCACGGGCTCCGACGACAAGACGATTCGAATCTGGGACA
CAGAGACTGGACAGGAAATGGGGAAAATGCAGGGGCATACAGGGTACGTG
TTTTGCGTTGCATTCAATCCTCAAGGCTCTTTATTGGCTTCGGGCTCTGA
GGACGAAAACGTGAAATTATGGGATTTACGTACCGGTGGGTGCTTAAAGA
CGTTGGAGGCTCATGCGGAGCCGGTCACAGGGGTTGACTTCAATGGAGAG
GGGACTTGCCTAGTCAGTGGGAGTTATGACGGGTTGGTGCGGCTGTGGGA
TGCTGGGATGGGCCAGTGTCTGAAGACCATGTTTGCCGAAGGGAGTCCTG
CGGTTGGTTGTGTGAAGTGGGCACCGAATGGCGAGTACGTGTTGGTGTCC
TCATTGGACTCGATGATCAGGCTTTGGGGGATGAGGAGCCCGAGTCGTGT
GGTGAAGACGTATCAAGGGCATCGAAACGAGAGGTTGTGTATGTCGGCGG
CGTTTGTGTATTTGCAGGGGCAGGGGAAGCACCGACACAAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GTTTGTGGTGAGTGGATCGGAGGATGGCAAAGTATACTTATGGGATGTAC
GTACTGGGAGGTTCGTGCAGGCCTTAGGAGGGCATAAGGCGGCGGTGTTG
AGCTTGGCTGTTCATCCTTCTCGAGGGGTGCTGGCCTCGGGGGGGACAAG
CGGGGATGGCGTGATCCGGTTGTGGTGCACGAAGGAGGAGGCGCAAGAGG
TGTTGATGGAGCAAAACGGTGGTTGTGGAGGAGGGAGAGAAGGGGGTGGT
GTGGAAATGGAGCTTGACAGTCTAAACTAG
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Synonyms
Publications