NO06G02110.1, NO06G02110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02110.1
Unique NameNO06G02110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length704
Alignment locationchr6:618247..619541 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:618247..619541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02110.1 vs.
Match: EWM26240.1 (histone family protein dna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 195.3 bits (495), Expect = 1.300e-46
Identity = 109/139 (78.42%), Postives = 121/139 (87.05%), Query Frame = 0 
Query:    1 MLRQTSSFFLLVLALLACTVTAFFHIAAPVTPGH---VLFATKAETSLKKTELLDQVVKKTGVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFGTSVRSARTARNPRTGEPIQVPETTVATFAPSKVLKDKVNHR 137
            MLR ++SFFLL LAL A  + AF H+  P TP     ++ ATKAETSLKKTELLDQVV+K+GVTK +ADKVL+AVTDSIAES+ADGKKVSLVGFGSFGTSVRSAR ARNPRTGEPIQVPETTVATFAPSKVLKDK+NHR
Sbjct:    1 MLRSSTSFFLLFLALTASIIHAFLHVNIP-TPSRGQPLMMATKAETSLKKTELLDQVVQKSGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKINHR 138
The following BLAST results are available for this feature:
BLAST of NO06G02110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26240.11.300e-4678.42histone family protein dna-binding protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02110NO06G02110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02110.1NO06G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02110.1.cds1NO06G02110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02110.1.cds2NO06G02110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02110.1.cds3NO06G02110.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02110.1.cds4NO06G02110.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02110.1 ID=NO06G02110.1|Name=NO06G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=704bp
ACAACAGCCCACCACCTCCCCGTCATCACCATGCTTCGCCAGACGTCTTC
CTTCTTTCTTCTGGTCCTGGCCTTGTTGGCATGCACTGTCACTGCCTTCT
TCCACATCGCAGCGCCCGTGACTCCCGGTCATGTTCTGTTCGCCACTAAG
GCCGAGACGTCTTTGAAGAAGACGGAGCTCTTGGACCAGGTGGTGAAGAA
GACGGGTGTGACCAAGGTCATGGCCGACAAGGTCCTCTCGGCCGTCACTG
ACTCTATCGCTGAGTCCTTGGCTGATGGGAAGAAGGTGTCGCTTGTCGGC
TTTGGGTCCTTTGGCACGTCCGTGAGGTCAGCCCGCACGGCCCGCAACCC
ACGAACTGGCGAGCCCATCCAGGTGCCCGAGACGACTGTGGCCACCTTCG
CGCCCTCCAAGGTGCTCAAGGACAAGGTCAACCATCGCACGCCCGAAAAA
TAGAAGAACAGTCATTACGCAAAAGTTGGAAGACCGGCGGCAGGGGGGAA
GGGAAGGATGGAAGGAAGGATAGAGGGAGGGAATCAGGGAGGGAGGGAAA
GAAGCAAGAAAGCAACACTTGATAAAATGACGTAATCGCGTTTAACTGTC
GTTTCCTCAGCTGTTAGTTTCACTCAGTTAGTCGTGCATTCAAGCGAAAA
CGGCGACGAAAATGACGATGTCACACACACACATCCCATGCCCACATAAC
CCCG
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protein sequence of NO06G02110.1

>NO06G02110.1-protein ID=NO06G02110.1-protein|Name=NO06G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MLRQTSSFFLLVLALLACTVTAFFHIAAPVTPGHVLFATKAETSLKKTEL
LDQVVKKTGVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFGTSVRS
ARTARNPRTGEPIQVPETTVATFAPSKVLKDKVNHRTPEK*
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mRNA from alignment at chr6:618247..619541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02110.1 ID=NO06G02110.1|Name=NO06G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1295bp|location=Sequence derived from alignment at chr6:618247..619541- (Nannochloropsis oceanica)
ACAACAGCCCACCACCTCCCCGTCATCACCATGCTTCGCCAGACGTCTTC
CTTCTTTCTTCTGGTCCTGGCCTTGTTGGCATGCACTGTCACTGCCTTCT
TCCACATCGCAGCGCCCGTGACTCCCGGTCATGTTCTGTTCGCCACTAAG
GCCGAGACGGTAAGTGTTTGTGGGGAGGTAAGGGGCCGAGGAAGCGAGGG
GTTGGTTGCCCAAGCGGAAGGAGGGGGTTGAGCGTTGAAGGAAACTTCTA
CCTCGTCTTGAGATGCGCTGCCATTTGGTGCTCAGGTTACACACACATCT
CACATCTGTAATATCTGTAGTCTTTGAAGAAGACGGAGCTCTTGGACCAG
GTGGTGAAGAAGACGGGTGTGACCAAGGTCATGGCCGACAAGGTCCTCTC
GGCCGTCACTGACTCTATCGCTGAGTCCTTGGCTGATGGGAAGAAGGGTA
AGAGTAAGGAGAAATACTATGGCTTATTTTTGACATAAGAGACGAGGAGG
AGTGACGTGGCGTGAGTGTGGCTGACTGGCATGCTTGAATTCCTATCCGG
AAACCGAGATATGGCCAGCTCGCCCGTACGAAAGCGACTATGCCTGTGCC
CTCTTCTACCTTCGTTATTCCTCTTGCGTACACGCTTCGGGCTAAATATT
AAATTATTCCTATCCTTGTCCTTTATTAACGTAGTGTCGCTTGTCGGCTT
TGGGTCCTTTGGCACGTCCGTGAGGTCAGCCCGCACGGCCCGCAACCCAC
GAACTGGCGAGCCCATCCAGGTGCCCGAGACGACTGTGGCCACCTTCGCG
CCCTCCAAGGTGCTCAAGGACAAGGTAAAGGACGACCCCAATCTGTCTAT
GTCACCAAATTGATATTGTTGTTTAATTTGCAGTTCTACCCGCGGTTTCT
ATGCGTGCATATTATGTGAATGTGTGTGTCCGGAGGAGATTAATCCTCTC
TTGCCCTCCTCATTCGCCTCCTAAAAACATTCTTCCTCTCGATCTACTTT
TATTTTTTCCGCATAAGGTCAACCATCGCACGCCCGAAAAATAGAAGAAC
AGTCATTACGCAAAAGTTGGAAGACCGGCGGCAGGGGGGAAGGGAAGGAT
GGAAGGAAGGATAGAGGGAGGGAATCAGGGAGGGAGGGAAAGAAGCAAGA
AAGCAACACTTGATAAAATGACGTAATCGCGTTTAACTGTCGTTTCCTCA
GCTGTTAGTTTCACTCAGTTAGTCGTGCATTCAAGCGAAAACGGCGACGA
AAATGACGATGTCACACACACACATCCCATGCCCACATAACCCCG
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Coding sequence (CDS) from alignment at chr6:618247..619541-

>NO06G02110.1 ID=NO06G02110.1|Name=NO06G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=423bp|location=Sequence derived from alignment at chr6:618247..619541- (Nannochloropsis oceanica)
ATGCTTCGCCAGACGTCTTCCTTCTTTCTTCTGGTCCTGGCCTTGTTGGC
ATGCACTGTCACTGCCTTCTTCCACATCGCAGCGCCCGTGACTCCCGGTC
ATGTTCTGTTCGCCACTAAGGCCGAGACGTCTTTGAAGAAGACGGAGCTC
TTGGACCAGGTGGTGAAGAAGACGGGTGTGACCAAGGTCATGGCCGACAA
GGTCCTCTCGGCCGTCACTGACTCTATCGCTGAGTCCTTGGCTGATGGGA
AGAAGGTGTCGCTTGTCGGCTTTGGGTCCTTTGGCACGTCCGTGAGGTCA
GCCCGCACGGCCCGCAACCCACGAACTGGCGAGCCCATCCAGGTGCCCGA
GACGACTGTGGCCACCTTCGCGCCCTCCAAGGTGCTCAAGGACAAGGTCA
ACCATCGCACGCCCGAAAAATAG
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Synonyms
Publications