NO06G01960.1, NO06G01960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01960.1
Unique NameNO06G01960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1879
Alignment locationchr6:583829..585707 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:583829..585707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01960.1 vs.
Match: EWM26257.1 (ribonuclease h [Nannochloropsis gaditana])

HSP 1 Score: 189.1 bits (479), Expect = 2.800e-44
Identity = 151/434 (34.79%), Postives = 222/434 (51.15%), Query Frame = 0 
Query:    2 KFYAVRLPIRAIFTSWPECNAVVSRANFANFKSFPTLEEARVYMEDGLALQEQPDEDGGEQQHVEKFMGDGGKDYEQRAGKPWGLKQESEGSRDGIGEGGGRGGGGGEERRMVSPPFMNTAESKREEQV-GEGG------QDARKRKAPLRVVGVEKRERGGGKGGEVISLLSDSGDEDYSEDLR----GGQKRRLKSDWGQAEERQDQNDDGESEEEYNDDNERFEATQAIPASPLAPVPKAPTRPPPLTIAAATAATTGASAAAAAAAAAAGRGGDIATVATAKAHVITSGKLFFDGGSRGNPGIAGCGAVMYDELSGRKLWSLSAFLGHDRTNNQAEYAALCFGLEEALKRGVSSVQVFGDSTLVVKQVQGAWKVKNAGMRVWHSKALALGKKFKRFRICYIPREENKVADALANEGMDGRKEGGAVVVEE 425
            K+YAV++P+RAIFTSW EC+AVV+ A  A FKSF +L+EAR ++EDGL  Q+   +    + H  +   +  +D +       G+ +E E + +G+          G E R       +T  +  +  V G GG      ++ RKRK         K E       E  +   + GD   +  L     GG    +  +    E R DQ ++   +++++D++ R   T+ IPA  L+P   +P  P     A A                          +   +   + +G LFFDGG+RGNPG++G GAVM+D    ++LW+LS FLG D+TNNQAEY AL  GLEEA +RGV ++   GDS LV++Q++G WKVKN  +   H++  AL ++F+     ++PR EN VADALAN  MD  K     VVEE
Sbjct:   48 KYYAVKVPMRAIFTSWSECHAVVNGAGNATFKSFSSLDEARAFVEDGLESQQYTGKKSSRESHGLQIFSE--QDLKDCGMLQEGIDEEREQNIEGLY------ANSGAETRKEYMERSSTPHTDMDNHVCGTGGARCAANEERRKRKRT-------KEEHAQDVSQEQDAFAQECGDAPLTGRLGSRIGGGSICTVGMNELAGEGRGDQENE---DDDFDDESSR--VTEPIPAIILSPNDTSPNIPSEDVSATA--------------------------LLQRRPRFVDAGVLFFDGGARGNPGVSGGGAVMFD-CDNKQLWTLSVFLGSDKTNNQAEYLALYHGLEEAARRGVRTLHARGDSLLVIRQMEGVWKVKNKAIMRLHAQVKALARRFRALTFQHVPRAENTVADALANAAMD--KRHSIPVVEE 432
The following BLAST results are available for this feature:
BLAST of NO06G01960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26257.12.800e-4434.79ribonuclease h [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01960NO06G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01960.1NO06G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01960.1.cds1NO06G01960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01960.1 ID=NO06G01960.1|Name=NO06G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp
ACAGGCAATGCCTCGAGGACGGCACCCACAGTCGTTGCGCCGAGCCTAAA
TCCGCCCTCCTTCCCCTCAGTCGAATCAAGTGCGCCTAGCACACCGCGGG
ACCGCGGGCAGCACCACTGCCACCACCACACTACAAGCGCAAGCCCCCAA
TGAAGTTTTACGCTGTCCGCCTTCCTATTCGCGCCATCTTCACCTCGTGG
CCGGAATGCAACGCCGTCGTTTCGCGGGCGAACTTTGCCAACTTCAAATC
CTTTCCTACGTTGGAGGAAGCTCGGGTGTACATGGAAGACGGGCTCGCGC
TGCAGGAGCAACCAGATGAAGACGGTGGGGAGCAGCAGCATGTGGAGAAA
TTCATGGGGGATGGTGGAAAGGATTACGAACAAAGAGCGGGTAAGCCATG
GGGTTTGAAGCAGGAGAGTGAAGGTTCTAGGGATGGGATCGGGGAGGGAG
GAGGGAGAGGGGGAGGAGGAGGAGAAGAAAGGAGGATGGTCTCACCGCCA
TTTATGAATACGGCGGAGTCGAAGAGAGAGGAGCAAGTTGGTGAAGGAGG
GCAAGATGCGAGGAAGCGGAAAGCACCACTTCGTGTCGTGGGCGTCGAGA
AGCGGGAAAGAGGAGGAGGAAAAGGAGGGGAGGTAATCAGTTTGCTGAGC
GACAGTGGAGACGAGGACTACAGCGAAGATTTGCGGGGAGGGCAAAAGAG
GCGACTGAAGAGTGATTGGGGACAAGCCGAAGAACGTCAAGACCAAAATG
ATGATGGGGAGAGCGAGGAGGAGTATAATGATGACAATGAGCGCTTCGAA
GCCACCCAAGCCATCCCTGCTTCCCCCCTCGCTCCTGTCCCCAAAGCCCC
TACTCGTCCTCCTCCTCTCACTATAGCCGCAGCAACTGCCGCAACTACTG
GCGCTAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTCGTGGTGGT
GATATTGCTACTGTTGCTACTGCCAAAGCGCATGTCATCACCTCCGGCAA
GCTATTCTTCGATGGCGGCTCGCGTGGGAATCCGGGCATTGCTGGTTGCG
GTGCTGTCATGTATGACGAGCTATCAGGGAGGAAACTCTGGTCTTTATCC
GCTTTTCTGGGGCACGATAGAACCAACAATCAAGCCGAATACGCTGCTTT
GTGCTTTGGGCTGGAGGAGGCATTGAAGCGAGGCGTGAGCAGTGTCCAGG
TCTTTGGAGACTCTACATTGGTAGTGAAGCAGGTGCAGGGGGCATGGAAG
GTCAAAAATGCCGGCATGAGAGTGTGGCATAGCAAGGCTCTGGCCCTGGG
GAAGAAGTTTAAACGGTTTCGGATTTGTTATATACCGAGGGAGGAGAACA
AGGTGGCGGACGCGTTGGCCAATGAAGGGATGGATGGACGGAAGGAAGGA
GGGGCGGTGGTCGTTGAGGAGTGATAAGGCTTGTAAATATGTGATGAATG
ATTAGTATAAAAAATAAAATAAAATGTGACGGAAGGGACTTCAGGATAGG
CGTCGATGATCATCAAGTCCAAGGATAAGCGTCCCCTTTGCCTCTTCAAA
AAGACCTCTTGGCGCTGATCCAATTCGAAATTTCCTGGCTTCTCCAATGC
ACCAGCCAAAGGGATAGGCTCAGCCATTCGACGAGTGCCTCCTGAGGCGC
CCCTCTAATCCACCCTCCTAATCCACCCTCACAATCCACCCTCCTAATCC
ACCCTCCTAATCCACCCCTCTAATCCACCCTCCTAATCCACCCACCAAAT
CCACCCTTCTAATCCACCCACCCACGGCACCGACAAATGAACCCAGACCG
TGCTAGATTTTCCCTTTATGCCGAATACGACTCACAACGAGCTGAATATG
GAAAAGCACAGAGCCATGACACGTGTCGT
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protein sequence of NO06G01960.1

>NO06G01960.1-protein ID=NO06G01960.1-protein|Name=NO06G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MKFYAVRLPIRAIFTSWPECNAVVSRANFANFKSFPTLEEARVYMEDGLA
LQEQPDEDGGEQQHVEKFMGDGGKDYEQRAGKPWGLKQESEGSRDGIGEG
GGRGGGGGEERRMVSPPFMNTAESKREEQVGEGGQDARKRKAPLRVVGVE
KRERGGGKGGEVISLLSDSGDEDYSEDLRGGQKRRLKSDWGQAEERQDQN
DDGESEEEYNDDNERFEATQAIPASPLAPVPKAPTRPPPLTIAAATAATT
GASAAAAAAAAAAGRGGDIATVATAKAHVITSGKLFFDGGSRGNPGIAGC
GAVMYDELSGRKLWSLSAFLGHDRTNNQAEYAALCFGLEEALKRGVSSVQ
VFGDSTLVVKQVQGAWKVKNAGMRVWHSKALALGKKFKRFRICYIPREEN
KVADALANEGMDGRKEGGAVVVEE*
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mRNA from alignment at chr6:583829..585707-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01960.1 ID=NO06G01960.1|Name=NO06G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at chr6:583829..585707- (Nannochloropsis oceanica)
ACAGGCAATGCCTCGAGGACGGCACCCACAGTCGTTGCGCCGAGCCTAAA
TCCGCCCTCCTTCCCCTCAGTCGAATCAAGTGCGCCTAGCACACCGCGGG
ACCGCGGGCAGCACCACTGCCACCACCACACTACAAGCGCAAGCCCCCAA
TGAAGTTTTACGCTGTCCGCCTTCCTATTCGCGCCATCTTCACCTCGTGG
CCGGAATGCAACGCCGTCGTTTCGCGGGCGAACTTTGCCAACTTCAAATC
CTTTCCTACGTTGGAGGAAGCTCGGGTGTACATGGAAGACGGGCTCGCGC
TGCAGGAGCAACCAGATGAAGACGGTGGGGAGCAGCAGCATGTGGAGAAA
TTCATGGGGGATGGTGGAAAGGATTACGAACAAAGAGCGGGTAAGCCATG
GGGTTTGAAGCAGGAGAGTGAAGGTTCTAGGGATGGGATCGGGGAGGGAG
GAGGGAGAGGGGGAGGAGGAGGAGAAGAAAGGAGGATGGTCTCACCGCCA
TTTATGAATACGGCGGAGTCGAAGAGAGAGGAGCAAGTTGGTGAAGGAGG
GCAAGATGCGAGGAAGCGGAAAGCACCACTTCGTGTCGTGGGCGTCGAGA
AGCGGGAAAGAGGAGGAGGAAAAGGAGGGGAGGTAATCAGTTTGCTGAGC
GACAGTGGAGACGAGGACTACAGCGAAGATTTGCGGGGAGGGCAAAAGAG
GCGACTGAAGAGTGATTGGGGACAAGCCGAAGAACGTCAAGACCAAAATG
ATGATGGGGAGAGCGAGGAGGAGTATAATGATGACAATGAGCGCTTCGAA
GCCACCCAAGCCATCCCTGCTTCCCCCCTCGCTCCTGTCCCCAAAGCCCC
TACTCGTCCTCCTCCTCTCACTATAGCCGCAGCAACTGCCGCAACTACTG
GCGCTAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTCGTGGTGGT
GATATTGCTACTGTTGCTACTGCCAAAGCGCATGTCATCACCTCCGGCAA
GCTATTCTTCGATGGCGGCTCGCGTGGGAATCCGGGCATTGCTGGTTGCG
GTGCTGTCATGTATGACGAGCTATCAGGGAGGAAACTCTGGTCTTTATCC
GCTTTTCTGGGGCACGATAGAACCAACAATCAAGCCGAATACGCTGCTTT
GTGCTTTGGGCTGGAGGAGGCATTGAAGCGAGGCGTGAGCAGTGTCCAGG
TCTTTGGAGACTCTACATTGGTAGTGAAGCAGGTGCAGGGGGCATGGAAG
GTCAAAAATGCCGGCATGAGAGTGTGGCATAGCAAGGCTCTGGCCCTGGG
GAAGAAGTTTAAACGGTTTCGGATTTGTTATATACCGAGGGAGGAGAACA
AGGTGGCGGACGCGTTGGCCAATGAAGGGATGGATGGACGGAAGGAAGGA
GGGGCGGTGGTCGTTGAGGAGTGATAAGGCTTGTAAATATGTGATGAATG
ATTAGTATAAAAAATAAAATAAAATGTGACGGAAGGGACTTCAGGATAGG
CGTCGATGATCATCAAGTCCAAGGATAAGCGTCCCCTTTGCCTCTTCAAA
AAGACCTCTTGGCGCTGATCCAATTCGAAATTTCCTGGCTTCTCCAATGC
ACCAGCCAAAGGGATAGGCTCAGCCATTCGACGAGTGCCTCCTGAGGCGC
CCCTCTAATCCACCCTCCTAATCCACCCTCACAATCCACCCTCCTAATCC
ACCCTCCTAATCCACCCCTCTAATCCACCCTCCTAATCCACCCACCAAAT
CCACCCTTCTAATCCACCCACCCACGGCACCGACAAATGAACCCAGACCG
TGCTAGATTTTCCCTTTATGCCGAATACGACTCACAACGAGCTGAATATG
GAAAAGCACAGAGCCATGACACGTGTCGT
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Coding sequence (CDS) from alignment at chr6:583829..585707-

>NO06G01960.1 ID=NO06G01960.1|Name=NO06G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=1275bp|location=Sequence derived from alignment at chr6:583829..585707- (Nannochloropsis oceanica)
ATGAAGTTTTACGCTGTCCGCCTTCCTATTCGCGCCATCTTCACCTCGTG
GCCGGAATGCAACGCCGTCGTTTCGCGGGCGAACTTTGCCAACTTCAAAT
CCTTTCCTACGTTGGAGGAAGCTCGGGTGTACATGGAAGACGGGCTCGCG
CTGCAGGAGCAACCAGATGAAGACGGTGGGGAGCAGCAGCATGTGGAGAA
ATTCATGGGGGATGGTGGAAAGGATTACGAACAAAGAGCGGGTAAGCCAT
GGGGTTTGAAGCAGGAGAGTGAAGGTTCTAGGGATGGGATCGGGGAGGGA
GGAGGGAGAGGGGGAGGAGGAGGAGAAGAAAGGAGGATGGTCTCACCGCC
ATTTATGAATACGGCGGAGTCGAAGAGAGAGGAGCAAGTTGGTGAAGGAG
GGCAAGATGCGAGGAAGCGGAAAGCACCACTTCGTGTCGTGGGCGTCGAG
AAGCGGGAAAGAGGAGGAGGAAAAGGAGGGGAGGTAATCAGTTTGCTGAG
CGACAGTGGAGACGAGGACTACAGCGAAGATTTGCGGGGAGGGCAAAAGA
GGCGACTGAAGAGTGATTGGGGACAAGCCGAAGAACGTCAAGACCAAAAT
GATGATGGGGAGAGCGAGGAGGAGTATAATGATGACAATGAGCGCTTCGA
AGCCACCCAAGCCATCCCTGCTTCCCCCCTCGCTCCTGTCCCCAAAGCCC
CTACTCGTCCTCCTCCTCTCACTATAGCCGCAGCAACTGCCGCAACTACT
GGCGCTAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTCGTGGTGG
TGATATTGCTACTGTTGCTACTGCCAAAGCGCATGTCATCACCTCCGGCA
AGCTATTCTTCGATGGCGGCTCGCGTGGGAATCCGGGCATTGCTGGTTGC
GGTGCTGTCATGTATGACGAGCTATCAGGGAGGAAACTCTGGTCTTTATC
CGCTTTTCTGGGGCACGATAGAACCAACAATCAAGCCGAATACGCTGCTT
TGTGCTTTGGGCTGGAGGAGGCATTGAAGCGAGGCGTGAGCAGTGTCCAG
GTCTTTGGAGACTCTACATTGGTAGTGAAGCAGGTGCAGGGGGCATGGAA
GGTCAAAAATGCCGGCATGAGAGTGTGGCATAGCAAGGCTCTGGCCCTGG
GGAAGAAGTTTAAACGGTTTCGGATTTGTTATATACCGAGGGAGGAGAAC
AAGGTGGCGGACGCGTTGGCCAATGAAGGGATGGATGGACGGAAGGAAGG
AGGGGCGGTGGTCGTTGAGGAGTGA
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Synonyms
Publications