NO06G01680.1, NO06G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01680.1
Unique NameNO06G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length759
Alignment locationchr6:520826..521584 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:520826..521584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01680.1 vs.
Match: EWM26244.1 (hypothetical protein Naga_100025g1 [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 7.200e-32
Identity = 84/148 (56.76%), Postives = 98/148 (66.22%), Query Frame = 0 
Query:    7 LPDLSFPPARRPSSDSIPPRSCPPSFPEEAGDTSILYQAVKSLYDLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCIGQFRALRGLFSKAEIETHSVTRGGNKLVIDWKITYYPRILPS-FCAISVHTITILTLMEPDEGTPERG 154
            LP L      RP S   PP S   S  E   D ++LY AVKSLYDL+GDVK V+  HY+PETASFIDP+V V + T  C+GQFRALRGLFS+AEI+T SVTRGGN LVIDW+I Y+PR LPS  C +S H   +      D G  ERG
Sbjct:   10 LPTLIPVSPSRPHSR--PPHSRTVS-KESMNDATVLYTAVKSLYDLTGDVKAVFGKHYVPETASFIDPLVTVTHDTKACVGQFRALRGLFSRAEIKTRSVTRGGNHLVIDWQIKYFPRGLPSPVCLLSAHHHNL------DLGDRERG 148
The following BLAST results are available for this feature:
BLAST of NO06G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26244.17.200e-3256.76hypothetical protein Naga_100025g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01680NO06G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01680.1NO06G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01680.1.cds1NO06G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01680.1 ID=NO06G01680.1|Name=NO06G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=759bp
ATGTCATTCTCCAAGATATTACCTGATCTCTCCTTTCCCCCCGCCCGTCG
ACCTTCCTCCGACTCAATCCCTCCGCGTTCGTGCCCGCCCTCCTTCCCGG
AAGAGGCCGGTGATACATCCATCCTCTACCAGGCTGTCAAGTCTCTTTAC
GACCTCAGCGGTGACGTCAAAGAAGTTTACAACATGCACTATATACCAGA
GACTGCTTCATTCATCGACCCTGTCGTCATGGTCAAGAATAGCACTTCTG
ATTGCATCGGACAATTCCGGGCCTTGCGTGGCCTCTTCTCCAAGGCCGAG
ATCGAGACCCACAGCGTCACCCGCGGGGGGAACAAACTAGTTATCGATTG
GAAAATCACTTACTATCCTCGAATTCTGCCATCATTTTGTGCCATATCTG
TTCATACCATCACAATTCTTACTCTCATGGAGCCTGACGAGGGCACGCCT
GAAAGAGGTAAGGCTTCTACGCGAATTTTGGAGCATGTAGACCATTGGTC
TGTGCACGAATTAATTTCTTCGGTGCCAATTGTATCATTCGTATATACTT
CCTTGTGGCGCCCGGCGGTGGGGAAGGGAAGTAGCGTGCTGACGAATGTG
TTGTATGGTTTGTTTGTTGCGAAAGGACCAACAGGGAAAAATGGGAGCCC
TGCTGAGTGCAATAGTGGAATTGCTGGAGGAGGAGGAGGAAAACAAGGAG
GAGGAGGAGGAGAAGAAGAAGAAGGAGGTGCTGTGGTGGGAGGAGGAGAA
GGCGAGTGA
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protein sequence of NO06G01680.1

>NO06G01680.1-protein ID=NO06G01680.1-protein|Name=NO06G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MSFSKILPDLSFPPARRPSSDSIPPRSCPPSFPEEAGDTSILYQAVKSLY
DLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCIGQFRALRGLFSKAE
IETHSVTRGGNKLVIDWKITYYPRILPSFCAISVHTITILTLMEPDEGTP
ERGKASTRILEHVDHWSVHELISSVPIVSFVYTSLWRPAVGKGSSVLTNV
LYGLFVAKGPTGKNGSPAECNSGIAGGGGGKQGGGGGEEEEGGAVVGGGE
GE*
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mRNA from alignment at chr6:520826..521584-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01680.1 ID=NO06G01680.1|Name=NO06G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=759bp|location=Sequence derived from alignment at chr6:520826..521584- (Nannochloropsis oceanica)
ATGTCATTCTCCAAGATATTACCTGATCTCTCCTTTCCCCCCGCCCGTCG
ACCTTCCTCCGACTCAATCCCTCCGCGTTCGTGCCCGCCCTCCTTCCCGG
AAGAGGCCGGTGATACATCCATCCTCTACCAGGCTGTCAAGTCTCTTTAC
GACCTCAGCGGTGACGTCAAAGAAGTTTACAACATGCACTATATACCAGA
GACTGCTTCATTCATCGACCCTGTCGTCATGGTCAAGAATAGCACTTCTG
ATTGCATCGGACAATTCCGGGCCTTGCGTGGCCTCTTCTCCAAGGCCGAG
ATCGAGACCCACAGCGTCACCCGCGGGGGGAACAAACTAGTTATCGATTG
GAAAATCACTTACTATCCTCGAATTCTGCCATCATTTTGTGCCATATCTG
TTCATACCATCACAATTCTTACTCTCATGGAGCCTGACGAGGGCACGCCT
GAAAGAGGTAAGGCTTCTACGCGAATTTTGGAGCATGTAGACCATTGGTC
TGTGCACGAATTAATTTCTTCGGTGCCAATTGTATCATTCGTATATACTT
CCTTGTGGCGCCCGGCGGTGGGGAAGGGAAGTAGCGTGCTGACGAATGTG
TTGTATGGTTTGTTTGTTGCGAAAGGACCAACAGGGAAAAATGGGAGCCC
TGCTGAGTGCAATAGTGGAATTGCTGGAGGAGGAGGAGGAAAACAAGGAG
GAGGAGGAGGAGAAGAAGAAGAAGGAGGTGCTGTGGTGGGAGGAGGAGAA
GGCGAGTGA
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Coding sequence (CDS) from alignment at chr6:520826..521584-

>NO06G01680.1 ID=NO06G01680.1|Name=NO06G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at chr6:520826..521584- (Nannochloropsis oceanica)
ATGTCATTCTCCAAGATATTACCTGATCTCTCCTTTCCCCCCGCCCGTCG
ACCTTCCTCCGACTCAATCCCTCCGCGTTCGTGCCCGCCCTCCTTCCCGG
AAGAGGCCGGTGATACATCCATCCTCTACCAGGCTGTCAAGTCTCTTTAC
GACCTCAGCGGTGACGTCAAAGAAGTTTACAACATGCACTATATACCAGA
GACTGCTTCATTCATCGACCCTGTCGTCATGGTCAAGAATAGCACTTCTG
ATTGCATCGGACAATTCCGGGCCTTGCGTGGCCTCTTCTCCAAGGCCGAG
ATCGAGACCCACAGCGTCACCCGCGGGGGGAACAAACTAGTTATCGATTG
GAAAATCACTTACTATCCTCGAATTCTGCCATCATTTTGTGCCATATCTG
TTCATACCATCACAATTCTTACTCTCATGGAGCCTGACGAGGGCACGCCT
GAAAGAGGTAAGGCTTCTACGCGAATTTTGGAGCATGTAGACCATTGGTC
TGTGCACGAATTAATTTCTTCGGTGCCAATTGTATCATTCGTATATACTT
CCTTGTGGCGCCCGGCGGTGGGGAAGGGAAGTAGCGTGCTGACGAATGTG
TTGTATGGTTTGTTTGTTGCGAAAGGACCAACAGGGAAAAATGGGAGCCC
TGCTGAGTGCAATAGTGGAATTGCTGGAGGAGGAGGAGGAAAACAAGGAG
GAGGAGGAGGAGAAGAAGAAGAAGGAGGTGCTGTGGTGGGAGGAGGAGAA
GGCGAGTGA
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Synonyms
Publications