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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:436613..439403 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G01360.2 vs.
Match: XP_002291062.1 (predicted protein [Thalassiosira pseudonana CCMP1335]; EED91169.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 152.5 bits (384), Expect = 4.500e-33 Identity = 126/356 (35.39%), Postives = 186/356 (52.25%), Query Frame = 0
Query: 174 YGFNRQYYDVFTHLTNEMVVLDVLRLPNP------ENTPEEGEGGREDVREEREEEDFDGDRYLGDM-VGRDEDPLYEEAMKITPFWL-----QKGIKGSEEGWDDVEKEELAMLKNRAFLWGETEEEAREGRRAVGLGLLDLLLAFCYDWRTTGGDPTVESAWTMTTLSPSLCYLETYRGRYGGREGGNEGVRKVVRTFMRRVVTYPYLRIWALAESCVEDVSGMLREGGGRGRRVMLRCLLRMRRVFRRTETHYLLNRLFLDDYCVMLQSTVGQIVVQELGEAWREGGQKGVRGVRVGKEEVGLGLVELER-LLEEKDEEEEEDDDDEEEDYEG-EESDSEEVEEEESSSEEGE 516
YG + Y VF E + ++L PNP E+ E E R ++R E E + FD DRYL D+ + + D +++ AMK+ P W+ Q + + + E LA L + E +R+ L LLD+L+A+ YD RTT GD TVES+WT+ LSPSL +LE+Y Y + V +VVR +RR + YPYLR + LA + V+DV +L RGRR ++RCLL++ R+ ++E HYL N+L++D +Q + VQ+ G E G +GKE + LGLVELE L D+ ++DDE DYE +ES + + + S E +
Sbjct: 185 YGLFQHYSSVFRDYAREGLAHEMLECPNPDEMYENEDMSEALETNRREMRLEVENDKFDPDRYLADLNISEEGDMIFDSAMKMVPHWIAASTMQSSVDTTNTFFSSEESHFLATLPTQI---NNIPTLTSEQQRSAYLSLLDVLIAYAYDHRTTDGDATVESSWTVMILSPSLSWLESYNPPY-------DTVAEVVRWCIRRTLIYPYLRSYTLARTLVKDVCQILL----RGRRTVIRCLLQLHRILEKSEAHYLFNKLYIDPLIGWMQQ-CEEKEVQDFGREVHEMLSDGDGDGSLGKECLNLGLVELEESFLAYDDDSSSSEEDDESVDYESDDESGGDTLSTTDVESTEAK 525
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G01360.2 ID=NO06G01360.2|Name=NO06G01360.2|organism=Nannochloropsis oceanica|type=mRNA|length=2581bp
ACAGATTTGGCAGTAAGCTTAAACGTCCAACGCGGCGGTTCCACTACTTT
TTGACACCTCCACGCTTCAAAAGCCTACCGGACTCCTCTTGCCCCTTCGA
GGCCCATCCCTCGACAACACACAATGCTAGTGCCCAAGTTTAGCCTCCAG
CAGACCACTGAGACCGTGGTGGTGACCATCAAACTACCATACATCCGTGT
GGGGGATTCCGAAGTTTCCGTGGTACGTGGAATGTCGCTTGATTCCTAGC
TTTTGGCTTCGAAGAGTATCCTCTGCTCTTACCTCTTGCCCCCCTCCCTC
TCCTCCCTTCCTACCTACCTATCCGCACGTTAAATAGGATGGGAAAGACT
TTGCCTTTTACTGCAAGCCCTATTTGCTCAAGCTATATTTTCCCCACCCC
CTGAAGAATAACGAAGAGGACGAAAGTCATTGCCGCGCTGTGTACGATTC
GGACTTGGATCACGGCACAATGACCCTTCATCTTCTCAAGGAAGATCCTG
GACAATTTTTCGAAGATCTCGATCTAACAACCACACTCCTTCAGCCCGTT
CGCTCCTTTGACCCGTCCTACTCCCCTGCCTCATCTTCCATCTCCACTGT
TGCTGCTGCCGCCATTCCTAGCAGTAGCAGCAGCAGCAACAGCTGCAGCA
GAGCGCCTATCTACCCGACGGGCCCGCCATCGATCGAGGTACTGCATTCG
GAAGATTTTTTGGGTCCTCCTCCCCCTACCAAGGTTCCCGATCGAGCAAC
TGGAACAACACGAACAGCAGCAGCAGCAGTACCGCCACCACCACCAGCGA
ATGCCGACCCTCCTCCTTCTCCTCCTTCCCCTCCTCTTCCTCCTTCTCCA
CCTGTCCCGCTTGAAGGTTTTCCAACCATCTCAACAAATACCAATAAGGC
TAACAGCAGCGGATCCGACCTCGCCCATTCCCTCCTCGAACCCAGACCTT
GCCTCGGCGGTCTCAACGTCGGTGGAAACGGTATCCGTTACGGCTTCAAT
CGTCAATACTACGACGTCTTCACCCACCTTACAAACGAAATGGTCGTCCT
CGATGTTTTGCGTCTCCCCAACCCGGAAAACACACCGGAGGAGGGCGAGG
GTGGGAGGGAGGACGTGAGGGAGGAAAGAGAGGAGGAGGATTTTGATGGG
GACAGATACCTGGGAGATATGGTGGGGAGAGACGAAGACCCTCTATATGA
AGAGGCGATGAAGATCACGCCATTTTGGCTGCAAAAGGGCATAAAAGGGA
GTGAAGAAGGGTGGGATGATGTCGAGAAGGAGGAGCTGGCGATGTTGAAG
AATAGGGCATTCCTGTGGGGGGAGACGGAGGAGGAGGCGAGGGAGGGAAG
GAGGGCGGTCGGGCTGGGGCTGCTGGATCTCTTGCTGGCCTTTTGTTATG
ATTGGAGGACGACGGGGGGAGACCCGACGGTCGAGTCCGCGTGGACGATG
ACTACCTTGTCTCCTTCTTTGTGTTATTTGGAGACATACAGGGGGAGGTA
TGGAGGAAGGGAGGGGGGGAATGAGGGGGTCAGGAAAGTCGTGCGGACTT
TCATGAGGCGGGTCGTGACGTATCCGTACCTGCGGATATGGGCCCTGGCG
GAGAGTTGTGTGGAAGACGTCAGTGGGATGCTACGGGAGGGCGGGGGGAG
GGGTAGGAGGGTCATGTTGAGGTGTTTGTTGAGGATGAGGCGAGTGTTTC
GGAGGACGGAGACGCATTATCTGCTGAATCGGTTGTTTTTAGATGATTAC
TGTGTGATGTTGCAGTCGACAGTGGGACAGATAGTGGTGCAGGAACTGGG
GGAGGCCTGGAGGGAAGGAGGGCAGAAAGGGGTGAGGGGCGTGCGGGTGG
GAAAGGAGGAGGTGGGGTTGGGGTTGGTGGAGCTGGAGAGGCTGTTGGAG
GAGAAAGATGAGGAGGAGGAGGAGGATGATGATGATGAGGAGGAGGACTA
TGAAGGGGAAGAGAGTGACAGCGAGGAGGTGGAGGAAGAGGAAAGCTCGT
CGGAGGAAGGGGAAGAGGCAGAGGTAGAGGTAGAGGAAGAAGAAGAGGAA
GAGGAAGAAGAAGAGGGGACAAGCATTGTGACGGCGGCGTTGAGAGAGGC
ATCCTTGACGGAGAAGCAGAAAGGGCGACAGGGAGAGAAAGGTGCTGTTG
AGGAGAAGGAGGGGAAGGGAGAGGGAGAGGATTTGTCGGTGGACATTGCA
TCGCTCTCAATGGACCCGAAGAGGCCAAAACTCGATTTTGGGGAGGGAGG
AGGAGGAGGAGGAAGAGGAGGAGGAGGAGAAGGAGAATTGTTGGTATCGG
CGAAGTCAAATATCTGGATTATACCGCGTGGTGGGGAGGATAATGAAGAA
AGAGGAGGAGAAGGAGGAGGAAAAGGATATGACGGTGGAGAAAAGGGTTG
GAGAAAGACAAAGGCTCAGGAAAGAGGGAGACCGTTGATAGAGGAGTTGT
AGAGAGAATCGATGGTGGAACCAAGCAAAAAGTATAAAAATGTATTCATA
CAACAGAAGCTGGAAAGAAATTTAAGGAGAAGGGAGCCCGCACAAGTGTA
GAAAGATAGAAGAAAAGGTGATTGAAGACTA back to topprotein sequence of NO06G01360.2 >NO06G01360.2-protein ID=NO06G01360.2-protein|Name=NO06G01360.2|organism=Nannochloropsis oceanica|type=polypeptide|length=661bp
MTLHLLKEDPGQFFEDLDLTTTLLQPVRSFDPSYSPASSSISTVAAAAIP
SSSSSSNSCSRAPIYPTGPPSIEVLHSEDFLGPPPPTKVPDRATGTTRTA
AAAVPPPPPANADPPPSPPSPPLPPSPPVPLEGFPTISTNTNKANSSGSD
LAHSLLEPRPCLGGLNVGGNGIRYGFNRQYYDVFTHLTNEMVVLDVLRLP
NPENTPEEGEGGREDVREEREEEDFDGDRYLGDMVGRDEDPLYEEAMKIT
PFWLQKGIKGSEEGWDDVEKEELAMLKNRAFLWGETEEEAREGRRAVGLG
LLDLLLAFCYDWRTTGGDPTVESAWTMTTLSPSLCYLETYRGRYGGREGG
NEGVRKVVRTFMRRVVTYPYLRIWALAESCVEDVSGMLREGGGRGRRVML
RCLLRMRRVFRRTETHYLLNRLFLDDYCVMLQSTVGQIVVQELGEAWREG
GQKGVRGVRVGKEEVGLGLVELERLLEEKDEEEEEDDDDEEEDYEGEESD
SEEVEEEESSSEEGEEAEVEVEEEEEEEEEEEGTSIVTAALREASLTEKQ
KGRQGEKGAVEEKEGKGEGEDLSVDIASLSMDPKRPKLDFGEGGGGGGRG
GGGEGELLVSAKSNIWIIPRGGEDNEERGGEGGGKGYDGGEKGWRKTKAQ
ERGRPLIEEL* back to topmRNA from alignment at chr6:436613..439403- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G01360.2 ID=NO06G01360.2|Name=NO06G01360.2|organism=Nannochloropsis oceanica|type=mRNA|length=2791bp|location=Sequence derived from alignment at chr6:436613..439403- (Nannochloropsis oceanica)
ACAGATTTGGCAGTAAGCTTAAACGTCCAACGCGGCGGTTCCACTACTTT
TTGACACCTCCACGCTTCAAAAGCCTACCGGACTCCTCTTGCCCCTTCGA
GGCCCATCCCTCGACAACACACAATGCTAGTGCCCAAGTTTAGCCTCCAG
CAGACCACTGAGACCGTGGTGGTGACCATCAAACTACCATACATCCGTGT
GGGGGATTCCGAAGTTTCCGTGGTACGTGGAATGTCGCTTGATTCCTAGC
TTTTGGCTTCGAAGAGTATCCTCTGCTCTTACCTCTTGCCCCCCTCCCTC
TCCTCCCTTCCTACCTACCTATCCGCACGTTAAATAGGATGGGAAAGACT
TTGCCTTTTACTGCAAGCCCTATTTGCTCAAGCTATATTTTCCCCACCCC
CTGAAGAATAACGAAGAGGACGAAAGTCATTGCCGCGCTGTGTACGATTC
GGACTTGGTACGTGCGGGAAATATTGGTGGTGGTGTGTTGGTGGTCGAAG
TAAGATAGATGAGATCCTTCGATGCTTGCTTATGCCTGTTCGCGACAATC
TACGATGCAATTCTATAAGCTTTCGTGGCTTGAAAGTGAAGTCGAAGCAA
GTCCTTCCTTTATCCCTTTTTCTCATTTTATCATTCTCCCTCCCTCCCTC
CTTCCTCCCTTCCATAGGATCACGGCACAATGACCCTTCATCTTCTCAAG
GAAGATCCTGGACAATTTTTCGAAGATCTCGATCTAACAACCACACTCCT
TCAGCCCGTTCGCTCCTTTGACCCGTCCTACTCCCCTGCCTCATCTTCCA
TCTCCACTGTTGCTGCTGCCGCCATTCCTAGCAGTAGCAGCAGCAGCAAC
AGCTGCAGCAGAGCGCCTATCTACCCGACGGGCCCGCCATCGATCGAGGT
ACTGCATTCGGAAGATTTTTTGGGTCCTCCTCCCCCTACCAAGGTTCCCG
ATCGAGCAACTGGAACAACACGAACAGCAGCAGCAGCAGTACCGCCACCA
CCACCAGCGAATGCCGACCCTCCTCCTTCTCCTCCTTCCCCTCCTCTTCC
TCCTTCTCCACCTGTCCCGCTTGAAGGTTTTCCAACCATCTCAACAAATA
CCAATAAGGCTAACAGCAGCGGATCCGACCTCGCCCATTCCCTCCTCGAA
CCCAGACCTTGCCTCGGCGGTCTCAACGTCGGTGGAAACGGTATCCGTTA
CGGCTTCAATCGTCAATACTACGACGTCTTCACCCACCTTACAAACGAAA
TGGTCGTCCTCGATGTTTTGCGTCTCCCCAACCCGGAAAACACACCGGAG
GAGGGCGAGGGTGGGAGGGAGGACGTGAGGGAGGAAAGAGAGGAGGAGGA
TTTTGATGGGGACAGATACCTGGGAGATATGGTGGGGAGAGACGAAGACC
CTCTATATGAAGAGGCGATGAAGATCACGCCATTTTGGCTGCAAAAGGGC
ATAAAAGGGAGTGAAGAAGGGTGGGATGATGTCGAGAAGGAGGAGCTGGC
GATGTTGAAGAATAGGGCATTCCTGTGGGGGGAGACGGAGGAGGAGGCGA
GGGAGGGAAGGAGGGCGGTCGGGCTGGGGCTGCTGGATCTCTTGCTGGCC
TTTTGTTATGATTGGAGGACGACGGGGGGAGACCCGACGGTCGAGTCCGC
GTGGACGATGACTACCTTGTCTCCTTCTTTGTGTTATTTGGAGACATACA
GGGGGAGGTATGGAGGAAGGGAGGGGGGGAATGAGGGGGTCAGGAAAGTC
GTGCGGACTTTCATGAGGCGGGTCGTGACGTATCCGTACCTGCGGATATG
GGCCCTGGCGGAGAGTTGTGTGGAAGACGTCAGTGGGATGCTACGGGAGG
GCGGGGGGAGGGGTAGGAGGGTCATGTTGAGGTGTTTGTTGAGGATGAGG
CGAGTGTTTCGGAGGACGGAGACGCATTATCTGCTGAATCGGTTGTTTTT
AGATGATTACTGTGTGATGTTGCAGTCGACAGTGGGACAGATAGTGGTGC
AGGAACTGGGGGAGGCCTGGAGGGAAGGAGGGCAGAAAGGGGTGAGGGGC
GTGCGGGTGGGAAAGGAGGAGGTGGGGTTGGGGTTGGTGGAGCTGGAGAG
GCTGTTGGAGGAGAAAGATGAGGAGGAGGAGGAGGATGATGATGATGAGG
AGGAGGACTATGAAGGGGAAGAGAGTGACAGCGAGGAGGTGGAGGAAGAG
GAAAGCTCGTCGGAGGAAGGGGAAGAGGCAGAGGTAGAGGTAGAGGAAGA
AGAAGAGGAAGAGGAAGAAGAAGAGGGGACAAGCATTGTGACGGCGGCGT
TGAGAGAGGCATCCTTGACGGAGAAGCAGAAAGGGCGACAGGGAGAGAAA
GGTGCTGTTGAGGAGAAGGAGGGGAAGGGAGAGGGAGAGGATTTGTCGGT
GGACATTGCATCGCTCTCAATGGACCCGAAGAGGCCAAAACTCGATTTTG
GGGAGGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGAAGGAGAATTG
TTGGTATCGGCGAAGTCAAATATCTGGATTATACCGCGTGGTGGGGAGGA
TAATGAAGAAAGAGGAGGAGAAGGAGGAGGAAAAGGATATGACGGTGGAG
AAAAGGGTTGGAGAAAGACAAAGGCTCAGGAAAGAGGGAGACCGTTGATA
GAGGAGTTGTAGAGAGAATCGATGGTGGAACCAAGCAAAAAGTATAAAAA
TGTATTCATACAACAGAAGCTGGAAAGAAATTTAAGGAGAAGGGAGCCCG
CACAAGTGTAGAAAGATAGAAGAAAAGGTGATTGAAGACTA back to topCoding sequence (CDS) from alignment at chr6:436613..439403- >NO06G01360.2 ID=NO06G01360.2|Name=NO06G01360.2|organism=Nannochloropsis oceanica|type=CDS|length=1983bp|location=Sequence derived from alignment at chr6:436613..439403- (Nannochloropsis oceanica)
ATGACCCTTCATCTTCTCAAGGAAGATCCTGGACAATTTTTCGAAGATCT
CGATCTAACAACCACACTCCTTCAGCCCGTTCGCTCCTTTGACCCGTCCT
ACTCCCCTGCCTCATCTTCCATCTCCACTGTTGCTGCTGCCGCCATTCCT
AGCAGTAGCAGCAGCAGCAACAGCTGCAGCAGAGCGCCTATCTACCCGAC
GGGCCCGCCATCGATCGAGGTACTGCATTCGGAAGATTTTTTGGGTCCTC
CTCCCCCTACCAAGGTTCCCGATCGAGCAACTGGAACAACACGAACAGCA
GCAGCAGCAGTACCGCCACCACCACCAGCGAATGCCGACCCTCCTCCTTC
TCCTCCTTCCCCTCCTCTTCCTCCTTCTCCACCTGTCCCGCTTGAAGGTT
TTCCAACCATCTCAACAAATACCAATAAGGCTAACAGCAGCGGATCCGAC
CTCGCCCATTCCCTCCTCGAACCCAGACCTTGCCTCGGCGGTCTCAACGT
CGGTGGAAACGGTATCCGTTACGGCTTCAATCGTCAATACTACGACGTCT
TCACCCACCTTACAAACGAAATGGTCGTCCTCGATGTTTTGCGTCTCCCC
AACCCGGAAAACACACCGGAGGAGGGCGAGGGTGGGAGGGAGGACGTGAG
GGAGGAAAGAGAGGAGGAGGATTTTGATGGGGACAGATACCTGGGAGATA
TGGTGGGGAGAGACGAAGACCCTCTATATGAAGAGGCGATGAAGATCACG
CCATTTTGGCTGCAAAAGGGCATAAAAGGGAGTGAAGAAGGGTGGGATGA
TGTCGAGAAGGAGGAGCTGGCGATGTTGAAGAATAGGGCATTCCTGTGGG
GGGAGACGGAGGAGGAGGCGAGGGAGGGAAGGAGGGCGGTCGGGCTGGGG
CTGCTGGATCTCTTGCTGGCCTTTTGTTATGATTGGAGGACGACGGGGGG
AGACCCGACGGTCGAGTCCGCGTGGACGATGACTACCTTGTCTCCTTCTT
TGTGTTATTTGGAGACATACAGGGGGAGGTATGGAGGAAGGGAGGGGGGG
AATGAGGGGGTCAGGAAAGTCGTGCGGACTTTCATGAGGCGGGTCGTGAC
GTATCCGTACCTGCGGATATGGGCCCTGGCGGAGAGTTGTGTGGAAGACG
TCAGTGGGATGCTACGGGAGGGCGGGGGGAGGGGTAGGAGGGTCATGTTG
AGGTGTTTGTTGAGGATGAGGCGAGTGTTTCGGAGGACGGAGACGCATTA
TCTGCTGAATCGGTTGTTTTTAGATGATTACTGTGTGATGTTGCAGTCGA
CAGTGGGACAGATAGTGGTGCAGGAACTGGGGGAGGCCTGGAGGGAAGGA
GGGCAGAAAGGGGTGAGGGGCGTGCGGGTGGGAAAGGAGGAGGTGGGGTT
GGGGTTGGTGGAGCTGGAGAGGCTGTTGGAGGAGAAAGATGAGGAGGAGG
AGGAGGATGATGATGATGAGGAGGAGGACTATGAAGGGGAAGAGAGTGAC
AGCGAGGAGGTGGAGGAAGAGGAAAGCTCGTCGGAGGAAGGGGAAGAGGC
AGAGGTAGAGGTAGAGGAAGAAGAAGAGGAAGAGGAAGAAGAAGAGGGGA
CAAGCATTGTGACGGCGGCGTTGAGAGAGGCATCCTTGACGGAGAAGCAG
AAAGGGCGACAGGGAGAGAAAGGTGCTGTTGAGGAGAAGGAGGGGAAGGG
AGAGGGAGAGGATTTGTCGGTGGACATTGCATCGCTCTCAATGGACCCGA
AGAGGCCAAAACTCGATTTTGGGGAGGGAGGAGGAGGAGGAGGAAGAGGA
GGAGGAGGAGAAGGAGAATTGTTGGTATCGGCGAAGTCAAATATCTGGAT
TATACCGCGTGGTGGGGAGGATAATGAAGAAAGAGGAGGAGAAGGAGGAG
GAAAAGGATATGACGGTGGAGAAAAGGGTTGGAGAAAGACAAAGGCTCAG
GAAAGAGGGAGACCGTTGATAGAGGAGTTGTAG back to top
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