NO06G01140.1, NO06G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01140.1
Unique NameNO06G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1596
Alignment locationchr6:363250..364845 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:363250..364845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01140.1 vs.
Match: EWM26136.1 (anthranilate synthase [Nannochloropsis gaditana])

HSP 1 Score: 756.5 bits (1952), Expect = 5.500e-215
Identity = 396/515 (76.89%), Postives = 437/515 (84.85%), Query Frame = 0 
Query:    4 TNNNNDDAANCGHLYGFGVPNHKPSILQTITAQRYEDVRLAQAQVPSSELEARIAAFDQVHGPPLNLFERIRADDKPIALAAEFKRASPSKGDIALDLVAAEQGIKYSKAGAAILSVLTEPKWFKGSLQDMEDVRVATEKGLQSSRSAVLRKDFVLEEYQLLEARAHGADTVLLIVAILEVDRLQRLIKTSRMWGMEPLVEVNTLPEMEIALDAGAKVIGVNNRNLHTFQLDLGTTERVMEAARKRSLSWDKKRGDILLAALSGISARADVVRYERAGVSVVLIGETLMRAADPLQAVRELLGLEDSARGSNTLIKVCGITRVEDAMVATRAGTNLIGTIFCASKRKVTGEGSAAVVQAVRKFGERTKRVLPYVEEIVDTAGAGALAPMSPEWFAHWQKELLRVTRRTPLVVGVFQNNSVEEVAELVEASGIDLIQLHGDETIGFAREISKKTGVPCIKVVHVPHDAAAATAEGLGKVLAGL-----QQEEGGKEGGPIALLLDTSVGNQKGGVG 514
            T +N  DAANCGHLYG G P H PSILQTITAQRY DV LAQAQ  +++LEARIA FD+ HGPPLNL ERIRA++KPIALAAEFKRASPSKGDIALDLVAAEQG+KY+KAGA+ILSVLTEPKWFKGSLQDMEDVR+ATE+GLQS R AVLRKDFV+ +YQ+LEARAHGADTVLLIVAILEVDRL RLI+  R WGMEPLVEVN L EMEIALDAGAKV+GVNNRNLHTFQLDLGTTERVME ARKR LSWD++RGDI LAALSGIS RADV RYE AGVSVVL+GETLMRA+DP  AVRELLGLE  A+G  TL+KVCGITRVEDA+ A RAG NLIGTIFC SKR+VT   SAAVVQAVR FGER++RVL Y E + D   AG +AP+SP WFAHW+  L RVTRRTPLVVGVFQNN+VEEVA  VEASG+DL+QLHGDE +GFA  +S+ TGVPC+KV+HVPH+        LG VLAGL     +QEEGG  GGPIALLLDTSVGNQKGG G
Sbjct:   52 TVSNGQDAANCGHLYGHGNPEHTPSILQTITAQRYLDVGLAQAQTSAADLEARIAEFDKAHGPPLNLLERIRAEEKPIALAAEFKRASPSKGDIALDLVAAEQGVKYTKAGASILSVLTEPKWFKGSLQDMEDVRLATEQGLQSLRPAVLRKDFVVADYQILEARAHGADTVLLIVAILEVDRLVRLIRACRAWGMEPLVEVNNLREMEIALDAGAKVVGVNNRNLHTFQLDLGTTERVMEVARKRGLSWDRRRGDIALAALSGISVRADVARYEEAGVSVVLVGETLMRASDPSLAVRELLGLERDAQGGATLVKVCGITRVEDALWAARAGVNLIGTIFCPSKRQVTASESAAVVQAVRGFGERSERVLEYSETVQDK--AGPVAPLSPAWFAHWRGVLQRVTRRTPLVVGVFQNNTVEEVAAAVEASGVDLVQLHGDEGVGFAAALSRLTGVPCLKVLHVPHNGGE-----LGHVLAGLEQAPEEQEEGGATGGPIALLLDTSVGNQKGGSG 559
The following BLAST results are available for this feature:
BLAST of NO06G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26136.15.500e-21576.89anthranilate synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01140NO06G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01140.1NO06G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01140.1.cds1NO06G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01140.1 ID=NO06G01140.1|Name=NO06G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp
ATGTCCGCTACGAACAACAACAATGACGACGCGGCCAATTGCGGTCACCT
TTACGGCTTCGGGGTCCCGAACCACAAGCCCAGCATCCTCCAAACCATCA
CCGCGCAACGCTACGAGGACGTGCGACTAGCTCAGGCCCAGGTCCCCTCT
TCTGAACTCGAGGCCCGCATCGCCGCCTTTGATCAAGTACACGGCCCGCC
CCTTAATTTATTTGAGCGTATCCGTGCCGATGACAAGCCCATTGCCTTGG
CCGCGGAATTCAAACGCGCGAGTCCCAGCAAGGGGGACATTGCCCTTGAC
CTAGTTGCGGCCGAGCAAGGCATCAAGTACTCTAAGGCAGGAGCGGCCAT
CTTATCAGTACTGACGGAACCCAAATGGTTCAAGGGCTCCTTGCAAGATA
TGGAAGACGTCCGCGTGGCCACGGAGAAGGGCCTGCAGTCCTCAAGGTCG
GCGGTATTAAGAAAGGATTTTGTATTGGAGGAGTACCAGCTTCTGGAGGC
ACGCGCGCACGGGGCAGACACGGTCTTGCTTATTGTTGCTATCTTAGAAG
TAGATCGCTTGCAACGTCTCATCAAGACGAGTCGTATGTGGGGGATGGAG
CCCTTGGTAGAGGTGAACACACTACCGGAAATGGAGATTGCGTTGGACGC
GGGAGCAAAGGTCATTGGTGTCAATAATCGGAATTTGCATACTTTCCAAC
TCGACTTAGGGACGACGGAGCGGGTGATGGAAGCTGCAAGAAAGCGGAGC
CTGAGCTGGGATAAAAAGAGGGGTGATATTTTGCTAGCAGCGTTGAGTGG
GATCTCGGCGAGGGCGGATGTGGTGAGGTATGAGAGGGCAGGTGTGTCGG
TCGTGTTGATAGGAGAAACTCTTATGCGGGCCGCGGACCCATTACAAGCC
GTCCGGGAGCTGTTGGGGTTAGAGGACAGTGCGCGGGGGTCGAATACGTT
GATCAAAGTGTGTGGGATTACGAGGGTGGAGGATGCGATGGTGGCGACGC
GGGCAGGGACGAATCTAATAGGCACGATTTTTTGCGCATCGAAACGGAAG
GTGACGGGCGAGGGAAGCGCGGCAGTCGTGCAGGCGGTGAGAAAGTTCGG
AGAACGGACCAAGCGAGTCTTGCCATATGTAGAGGAGATTGTTGATACTG
CTGGTGCTGGTGCTTTAGCGCCCATGTCCCCCGAGTGGTTTGCACATTGG
CAGAAGGAATTGTTACGAGTCACACGTCGGACACCGCTGGTGGTGGGGGT
GTTTCAAAACAACAGTGTGGAGGAGGTCGCTGAGCTTGTAGAGGCTTCAG
GGATAGATTTGATTCAGTTGCATGGAGATGAGACAATCGGCTTTGCCAGA
GAGATTTCGAAGAAGACAGGCGTGCCGTGTATTAAAGTCGTGCATGTCCC
GCATGACGCTGCGGCTGCTACCGCCGAGGGATTGGGGAAGGTCCTCGCAG
GGTTACAACAGGAGGAGGGCGGAAAGGAGGGAGGGCCGATTGCCTTGTTG
TTGGACACTTCGGTGGGAAATCAGAAGGGGGGAGTGGGGCGAAATTTGAT
TGGAGCTTGGCAGCGATGGCGCAGGCGCAGGGATTTCCGGTTATAG
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protein sequence of NO06G01140.1

>NO06G01140.1-protein ID=NO06G01140.1-protein|Name=NO06G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MSATNNNNDDAANCGHLYGFGVPNHKPSILQTITAQRYEDVRLAQAQVPS
SELEARIAAFDQVHGPPLNLFERIRADDKPIALAAEFKRASPSKGDIALD
LVAAEQGIKYSKAGAAILSVLTEPKWFKGSLQDMEDVRVATEKGLQSSRS
AVLRKDFVLEEYQLLEARAHGADTVLLIVAILEVDRLQRLIKTSRMWGME
PLVEVNTLPEMEIALDAGAKVIGVNNRNLHTFQLDLGTTERVMEAARKRS
LSWDKKRGDILLAALSGISARADVVRYERAGVSVVLIGETLMRAADPLQA
VRELLGLEDSARGSNTLIKVCGITRVEDAMVATRAGTNLIGTIFCASKRK
VTGEGSAAVVQAVRKFGERTKRVLPYVEEIVDTAGAGALAPMSPEWFAHW
QKELLRVTRRTPLVVGVFQNNSVEEVAELVEASGIDLIQLHGDETIGFAR
EISKKTGVPCIKVVHVPHDAAAATAEGLGKVLAGLQQEEGGKEGGPIALL
LDTSVGNQKGGVGRNLIGAWQRWRRRRDFRL*
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mRNA from alignment at chr6:363250..364845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01140.1 ID=NO06G01140.1|Name=NO06G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp|location=Sequence derived from alignment at chr6:363250..364845- (Nannochloropsis oceanica)
ATGTCCGCTACGAACAACAACAATGACGACGCGGCCAATTGCGGTCACCT
TTACGGCTTCGGGGTCCCGAACCACAAGCCCAGCATCCTCCAAACCATCA
CCGCGCAACGCTACGAGGACGTGCGACTAGCTCAGGCCCAGGTCCCCTCT
TCTGAACTCGAGGCCCGCATCGCCGCCTTTGATCAAGTACACGGCCCGCC
CCTTAATTTATTTGAGCGTATCCGTGCCGATGACAAGCCCATTGCCTTGG
CCGCGGAATTCAAACGCGCGAGTCCCAGCAAGGGGGACATTGCCCTTGAC
CTAGTTGCGGCCGAGCAAGGCATCAAGTACTCTAAGGCAGGAGCGGCCAT
CTTATCAGTACTGACGGAACCCAAATGGTTCAAGGGCTCCTTGCAAGATA
TGGAAGACGTCCGCGTGGCCACGGAGAAGGGCCTGCAGTCCTCAAGGTCG
GCGGTATTAAGAAAGGATTTTGTATTGGAGGAGTACCAGCTTCTGGAGGC
ACGCGCGCACGGGGCAGACACGGTCTTGCTTATTGTTGCTATCTTAGAAG
TAGATCGCTTGCAACGTCTCATCAAGACGAGTCGTATGTGGGGGATGGAG
CCCTTGGTAGAGGTGAACACACTACCGGAAATGGAGATTGCGTTGGACGC
GGGAGCAAAGGTCATTGGTGTCAATAATCGGAATTTGCATACTTTCCAAC
TCGACTTAGGGACGACGGAGCGGGTGATGGAAGCTGCAAGAAAGCGGAGC
CTGAGCTGGGATAAAAAGAGGGGTGATATTTTGCTAGCAGCGTTGAGTGG
GATCTCGGCGAGGGCGGATGTGGTGAGGTATGAGAGGGCAGGTGTGTCGG
TCGTGTTGATAGGAGAAACTCTTATGCGGGCCGCGGACCCATTACAAGCC
GTCCGGGAGCTGTTGGGGTTAGAGGACAGTGCGCGGGGGTCGAATACGTT
GATCAAAGTGTGTGGGATTACGAGGGTGGAGGATGCGATGGTGGCGACGC
GGGCAGGGACGAATCTAATAGGCACGATTTTTTGCGCATCGAAACGGAAG
GTGACGGGCGAGGGAAGCGCGGCAGTCGTGCAGGCGGTGAGAAAGTTCGG
AGAACGGACCAAGCGAGTCTTGCCATATGTAGAGGAGATTGTTGATACTG
CTGGTGCTGGTGCTTTAGCGCCCATGTCCCCCGAGTGGTTTGCACATTGG
CAGAAGGAATTGTTACGAGTCACACGTCGGACACCGCTGGTGGTGGGGGT
GTTTCAAAACAACAGTGTGGAGGAGGTCGCTGAGCTTGTAGAGGCTTCAG
GGATAGATTTGATTCAGTTGCATGGAGATGAGACAATCGGCTTTGCCAGA
GAGATTTCGAAGAAGACAGGCGTGCCGTGTATTAAAGTCGTGCATGTCCC
GCATGACGCTGCGGCTGCTACCGCCGAGGGATTGGGGAAGGTCCTCGCAG
GGTTACAACAGGAGGAGGGCGGAAAGGAGGGAGGGCCGATTGCCTTGTTG
TTGGACACTTCGGTGGGAAATCAGAAGGGGGGAGTGGGGCGAAATTTGAT
TGGAGCTTGGCAGCGATGGCGCAGGCGCAGGGATTTCCGGTTATAG
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Coding sequence (CDS) from alignment at chr6:363250..364845-

>NO06G01140.1 ID=NO06G01140.1|Name=NO06G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr6:363250..364845- (Nannochloropsis oceanica)
ATGTCCGCTACGAACAACAACAATGACGACGCGGCCAATTGCGGTCACCT
TTACGGCTTCGGGGTCCCGAACCACAAGCCCAGCATCCTCCAAACCATCA
CCGCGCAACGCTACGAGGACGTGCGACTAGCTCAGGCCCAGGTCCCCTCT
TCTGAACTCGAGGCCCGCATCGCCGCCTTTGATCAAGTACACGGCCCGCC
CCTTAATTTATTTGAGCGTATCCGTGCCGATGACAAGCCCATTGCCTTGG
CCGCGGAATTCAAACGCGCGAGTCCCAGCAAGGGGGACATTGCCCTTGAC
CTAGTTGCGGCCGAGCAAGGCATCAAGTACTCTAAGGCAGGAGCGGCCAT
CTTATCAGTACTGACGGAACCCAAATGGTTCAAGGGCTCCTTGCAAGATA
TGGAAGACGTCCGCGTGGCCACGGAGAAGGGCCTGCAGTCCTCAAGGTCG
GCGGTATTAAGAAAGGATTTTGTATTGGAGGAGTACCAGCTTCTGGAGGC
ACGCGCGCACGGGGCAGACACGGTCTTGCTTATTGTTGCTATCTTAGAAG
TAGATCGCTTGCAACGTCTCATCAAGACGAGTCGTATGTGGGGGATGGAG
CCCTTGGTAGAGGTGAACACACTACCGGAAATGGAGATTGCGTTGGACGC
GGGAGCAAAGGTCATTGGTGTCAATAATCGGAATTTGCATACTTTCCAAC
TCGACTTAGGGACGACGGAGCGGGTGATGGAAGCTGCAAGAAAGCGGAGC
CTGAGCTGGGATAAAAAGAGGGGTGATATTTTGCTAGCAGCGTTGAGTGG
GATCTCGGCGAGGGCGGATGTGGTGAGGTATGAGAGGGCAGGTGTGTCGG
TCGTGTTGATAGGAGAAACTCTTATGCGGGCCGCGGACCCATTACAAGCC
GTCCGGGAGCTGTTGGGGTTAGAGGACAGTGCGCGGGGGTCGAATACGTT
GATCAAAGTGTGTGGGATTACGAGGGTGGAGGATGCGATGGTGGCGACGC
GGGCAGGGACGAATCTAATAGGCACGATTTTTTGCGCATCGAAACGGAAG
GTGACGGGCGAGGGAAGCGCGGCAGTCGTGCAGGCGGTGAGAAAGTTCGG
AGAACGGACCAAGCGAGTCTTGCCATATGTAGAGGAGATTGTTGATACTG
CTGGTGCTGGTGCTTTAGCGCCCATGTCCCCCGAGTGGTTTGCACATTGG
CAGAAGGAATTGTTACGAGTCACACGTCGGACACCGCTGGTGGTGGGGGT
GTTTCAAAACAACAGTGTGGAGGAGGTCGCTGAGCTTGTAGAGGCTTCAG
GGATAGATTTGATTCAGTTGCATGGAGATGAGACAATCGGCTTTGCCAGA
GAGATTTCGAAGAAGACAGGCGTGCCGTGTATTAAAGTCGTGCATGTCCC
GCATGACGCTGCGGCTGCTACCGCCGAGGGATTGGGGAAGGTCCTCGCAG
GGTTACAACAGGAGGAGGGCGGAAAGGAGGGAGGGCCGATTGCCTTGTTG
TTGGACACTTCGGTGGGAAATCAGAAGGGGGGAGTGGGGCGAAATTTGAT
TGGAGCTTGGCAGCGATGGCGCAGGCGCAGGGATTTCCGGTTATAG
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Synonyms
Publications