NO06G01120.1, NO06G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01120.1
Unique NameNO06G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1008
Alignment locationchr6:358290..360145 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:358290..360145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01120.1 vs.
Match: EWM26089.1 (protein af-9 [Nannochloropsis gaditana])

HSP 1 Score: 397.9 bits (1021), Expect = 3.100e-107
Identity = 221/335 (65.97%), Postives = 245/335 (73.13%), Query Frame = 0 
Query:    1 MEESKPPRRMKGVTVCLPIVYGSIAWHVTKKGDSQDQCTHQWTLYVRSPHGHDLSTVLKKTVFTLHPSFLNHIREVATHPFEVTEKGWGEFEALVDLHFKDAHEKSVELRHFVKLFHGNSASAQPNNKKPVVHEYYDEVVFTDPTEEFYQCLQHLGESKTHRHTLQDLFPLYNDVEDVRRIQAAHEFITDQLRTAKDKLLRVESSAKAILDERRALVVPPTPVAPTLQSVVSTTAAAPAPAPATAPATAPTSTNPSAPAPTPPVTSTAPPSAAPALTTAIPTTTNNGNAPSGSHAPTAAALPSTTANTTAEAPVQAMPAVSTAPTSTAPEPPASN 336
            MEESKPPRRMKGVTVCLPI YGSIAWH+TKK + QDQCTHQWTLYVRSPHGHDL  VLKKTVFTLH SF NHIRE + HPFEVTEKGWGEFEAL+D++FKDAHEKSVELRHFVKLFHGNSA++QPNNKKPVVHEYYDEVVFTDPTEEFYQCLQHLGE+KTHRHTLQDLFPLY+DVED+RRIQAAHEF+TDQLRTAKDKLLRVES AKA+L+ER A   P                  P P PA    TAP     S  AP+    STAPP  A   T++  T T +  A   S AP                  Q  P+ +  P STA + P+++
Sbjct:   47 MEESKPPRRMKGVTVCLPIAYGSIAWHMTKKTE-QDQCTHQWTLYVRSPHGHDLGAVLKKTVFTLHSSFNNHIREASAHPFEVTEKGWGEFEALIDVYFKDAHEKSVELRHFVKLFHGNSATSQPNNKKPVVHEYYDEVVFTDPTEEFYQCLQHLGETKTHRHTLQDLFPLYSDVEDIRRIQAAHEFVTDQLRTAKDKLLRVESGAKALLEERNAASPP------------------PGPPPANGLPTAPVPA--SGAAPSTSAESTAPPRDALVSTSSGTTQTISSQASVPSAAP------------------QGPPSTAPQPISTAQQVPSAS 342
The following BLAST results are available for this feature:
BLAST of NO06G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26089.13.100e-10765.97protein af-9 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01120NO06G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01120.1NO06G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01120.1.cds1NO06G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01120.1.cds2NO06G01120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01120.1.cds3NO06G01120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01120.1.cds4NO06G01120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01120.1.cds5NO06G01120.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01120.1.cds6NO06G01120.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01120.1 ID=NO06G01120.1|Name=NO06G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp
ATGGAGGAATCGAAGCCACCCCGACGCATGAAAGGCGTGACAGTGTGTCT
GCCCATTGTCTACGGCTCAATCGCCTGGCACGTGACCAAGAAGGGTGACT
CACAGGACCAGTGCACCCATCAATGGACATTGTATGTCCGCAGCCCGCAT
GGCCATGATCTGAGCACCGTCCTGAAGAAGACCGTCTTTACGCTGCACCC
AAGTTTCCTTAACCACATCCGTGAGGTGGCTACCCACCCATTCGAGGTGA
CTGAAAAAGGCTGGGGTGAATTCGAGGCGTTGGTTGATCTGCATTTTAAG
GATGCGCACGAAAAATCGGTGGAGCTCCGCCATTTTGTCAAGCTCTTTCA
CGGGAACAGTGCCTCGGCCCAGCCGAATAATAAGAAGCCGGTCGTCCACG
AGTATTACGACGAAGTGGTTTTTACAGATCCCACGGAAGAATTCTACCAG
TGCCTGCAGCATTTGGGGGAGAGTAAGACCCATCGCCACACTCTCCAGGA
TCTCTTCCCTCTGTACAACGACGTGGAGGACGTGCGGCGGATCCAGGCAG
CCCACGAGTTTATCACCGACCAGCTCCGAACCGCCAAGGACAAGCTTCTT
CGCGTCGAAAGCAGCGCGAAGGCCATTCTCGACGAGCGGAGGGCCCTTGT
CGTCCCCCCCACTCCCGTCGCGCCTACTCTTCAGTCAGTAGTTTCTACTA
CCGCAGCAGCACCAGCACCAGCACCAGCAACAGCACCAGCAACAGCGCCT
ACCTCCACCAATCCCTCTGCCCCCGCTCCTACTCCTCCTGTCACGTCCAC
GGCCCCTCCTTCTGCTGCTCCTGCGCTAACCACCGCCATACCGACGACGA
CGAACAATGGCAATGCCCCTTCTGGATCTCATGCACCCACCGCTGCTGCT
CTTCCCTCTACCACTGCCAATACCACGGCCGAGGCCCCTGTCCAAGCAAT
GCCTGCCGTATCAACTGCGCCGACATCTACTGCTCCTGAACCACCGGCAT
CAAACTAG
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protein sequence of NO06G01120.1

>NO06G01120.1-protein ID=NO06G01120.1-protein|Name=NO06G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MEESKPPRRMKGVTVCLPIVYGSIAWHVTKKGDSQDQCTHQWTLYVRSPH
GHDLSTVLKKTVFTLHPSFLNHIREVATHPFEVTEKGWGEFEALVDLHFK
DAHEKSVELRHFVKLFHGNSASAQPNNKKPVVHEYYDEVVFTDPTEEFYQ
CLQHLGESKTHRHTLQDLFPLYNDVEDVRRIQAAHEFITDQLRTAKDKLL
RVESSAKAILDERRALVVPPTPVAPTLQSVVSTTAAAPAPAPATAPATAP
TSTNPSAPAPTPPVTSTAPPSAAPALTTAIPTTTNNGNAPSGSHAPTAAA
LPSTTANTTAEAPVQAMPAVSTAPTSTAPEPPASN*
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mRNA from alignment at chr6:358290..360145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01120.1 ID=NO06G01120.1|Name=NO06G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp|location=Sequence derived from alignment at chr6:358290..360145- (Nannochloropsis oceanica)
ATGGAGGAATCGAAGCCACCCCGACGCATGAAAGGCGTGACAGTGTGTCT
GCCCATTGTCTACGGCTCAATCGCCTGGCACGTGACCAAGAAGGGTGACT
CACAGGACCAGTGCACCCATCAATGGACATGTACGTCGGGAAGTCTGTAG
GGAGGGGATTATTTGGCACTCTGGTTTTATTCCTCACCCCCTCTCCTTTC
CTTTTTACGCACAGTGTATGTCCGCAGCCCGCATGGCCATGATCTGAGCA
CCGTCCTGAAGAAGACCGTCTTTACGCTGCACCCAAGTTTCCTTAACCAC
ATCCGTGGTAAGTGTGTGCTTTGCCTTGTTTGCCTTCCCTGCAGCCCCTT
CGCAGCGTCTTGTTGAGATCAGGTCTGTGAAAGAGGCGCGGATTTATATC
GTTCTGTTTCTTTACACCGCTTTGAGTCTGTATATGACACGGCTTTCCAT
TGAAAGCTCGCCCACTGCGCAAAACATGGGGGAAGATGTACTTTCCTACC
ACCTTTCTAACGCACATATTCCTTGCTCTGCTCCGTCAAAAATAAAACGC
AGAGGTGGCTACCCACCCATTCGAGGTGACTGAAAAAGGCTGGGGTGAAT
TCGAGGCGTTGGTTGATCTGCATTTTAAGGATGCGCACGAAAAATCGGTG
GAGCTCCGCCATTTTGTCAAGCTCTTTCACGGGAACAGTGCCTCGGCCCA
GCCGAATAATAAGAAGGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GGGAGGGGGGGGGGGGATGAATGCGAGGGAAAAGCGGGGTTTAGGGTAGA
GTCGAAACTATTCGGCTGTATTGCTCCTTTTTATCTTGTTGAAAAGTACC
TCGTCTTCACTTTCTCGTACTCCCGGCTCTTACTCACTCACTCCCTCCCT
CCCTCCCTCCCTCCTTCCTTCTCAAAAGCCGGTCGTCCACGAGTATTACG
ACGAAGTGGTTTTTACAGATCCCACGGAAGAATTCTACCAGTGCCTGCAG
CATTTGGGGGAGAGTAAGACCCATCGCCACACTCTCCAGGTAAAAGGAAC
GGAGGCAGGGAGAGGGAGAGGGGTGGGAAAGCTGAGGATGGATGGGGAAT
TCATGAGTTGAGATTCTATGTCATCTCTAGCATTCAAGACTTCTTTCTTT
TACTTCAAAAACATTTCAGGATCTCTTCCCTCTGTACAACGACGTGGAGG
ACGTGCGGCGGATCCAGGCAGCCCACGAGTTTATCACCGACCAGCTCCGA
AGTGAGTTCCATCCCATTTCTCTTTGTCATTTCTTCTCATTGCTTTCTCG
AATGGGAGGGTGTAGTGTCGAGTGTGTTCTCTCCGTTGCTTCCCTCCTTC
TCCAAAACTACCCTCGCAATCTCCCCGTCCCACTTCATTCACCTCACATA
ATCTTGTGTCATCTCTTTTTTTCCTCAGCCGCCAAGGACAAGCTTCTTCG
CGTCGAAAGCAGCGCGAAGGCCATTCTCGACGAGCGGAGGGCCCTTGTCG
TCCCCCCCACTCCCGTCGCGCCTACTCTTCAGTCAGTAGTTTCTACTACC
GCAGCAGCACCAGCACCAGCACCAGCAACAGCACCAGCAACAGCGCCTAC
CTCCACCAATCCCTCTGCCCCCGCTCCTACTCCTCCTGTCACGTCCACGG
CCCCTCCTTCTGCTGCTCCTGCGCTAACCACCGCCATACCGACGACGACG
AACAATGGCAATGCCCCTTCTGGATCTCATGCACCCACCGCTGCTGCTCT
TCCCTCTACCACTGCCAATACCACGGCCGAGGCCCCTGTCCAAGCAATGC
CTGCCGTATCAACTGCGCCGACATCTACTGCTCCTGAACCACCGGCATCA
AACTAG
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Coding sequence (CDS) from alignment at chr6:358290..360145-

>NO06G01120.1 ID=NO06G01120.1|Name=NO06G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at chr6:358290..360145- (Nannochloropsis oceanica)
ATGGAGGAATCGAAGCCACCCCGACGCATGAAAGGCGTGACAGTGTGTCT
GCCCATTGTCTACGGCTCAATCGCCTGGCACGTGACCAAGAAGGGTGACT
CACAGGACCAGTGCACCCATCAATGGACATTGTATGTCCGCAGCCCGCAT
GGCCATGATCTGAGCACCGTCCTGAAGAAGACCGTCTTTACGCTGCACCC
AAGTTTCCTTAACCACATCCGTGAGGTGGCTACCCACCCATTCGAGGTGA
CTGAAAAAGGCTGGGGTGAATTCGAGGCGTTGGTTGATCTGCATTTTAAG
GATGCGCACGAAAAATCGGTGGAGCTCCGCCATTTTGTCAAGCTCTTTCA
CGGGAACAGTGCCTCGGCCCAGCCGAATAATAAGAAGCCGGTCGTCCACG
AGTATTACGACGAAGTGGTTTTTACAGATCCCACGGAAGAATTCTACCAG
TGCCTGCAGCATTTGGGGGAGAGTAAGACCCATCGCCACACTCTCCAGGA
TCTCTTCCCTCTGTACAACGACGTGGAGGACGTGCGGCGGATCCAGGCAG
CCCACGAGTTTATCACCGACCAGCTCCGAACCGCCAAGGACAAGCTTCTT
CGCGTCGAAAGCAGCGCGAAGGCCATTCTCGACGAGCGGAGGGCCCTTGT
CGTCCCCCCCACTCCCGTCGCGCCTACTCTTCAGTCAGTAGTTTCTACTA
CCGCAGCAGCACCAGCACCAGCACCAGCAACAGCACCAGCAACAGCGCCT
ACCTCCACCAATCCCTCTGCCCCCGCTCCTACTCCTCCTGTCACGTCCAC
GGCCCCTCCTTCTGCTGCTCCTGCGCTAACCACCGCCATACCGACGACGA
CGAACAATGGCAATGCCCCTTCTGGATCTCATGCACCCACCGCTGCTGCT
CTTCCCTCTACCACTGCCAATACCACGGCCGAGGCCCCTGTCCAAGCAAT
GCCTGCCGTATCAACTGCGCCGACATCTACTGCTCCTGAACCACCGGCAT
CAAACTAG
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Synonyms
Publications